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From s...@apache.org
Subject svn commit: r1042336 - in /commons/proper/math/branches/MATH_2_X/src: main/java/org/apache/commons/math/ main/java/org/apache/commons/math/analysis/ main/java/org/apache/commons/math/analysis/interpolation/ main/java/org/apache/commons/math/analysis/so...
Date Sun, 05 Dec 2010 12:40:49 GMT
Author: sebb
Date: Sun Dec  5 12:40:48 2010
New Revision: 1042336

URL: http://svn.apache.org/viewvc?rev=1042336&view=rev
Log:
Add missing @Deprecated annotations

Modified:
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ConvergingAlgorithm.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ConvergingAlgorithmImpl.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/FunctionEvaluationException.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/MathRuntimeException.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/BinaryFunction.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/ComposableFunction.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/interpolation/SmoothingBicubicSplineInterpolator.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/BisectionSolver.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolver.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolverImpl.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/BetaDistributionImpl.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/ChiSquaredDistributionImpl.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/ExponentialDistributionImpl.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/GammaDistributionImpl.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/HasDensity.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/NormalDistributionImpl.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/linear/MatrixVisitorException.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/linear/RealVector.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ode/DerivativeException.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/optimization/general/AbstractScalarDifferentiableOptimizer.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/optimization/univariate/AbstractUnivariateRealOptimizer.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/stat/inference/TTestImpl.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/stat/regression/SimpleRegression.java
    commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/util/MathUtils.java
    commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/FunctionEvaluationExceptionTest.java
    commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/analysis/interpolation/SmoothingBicubicSplineInterpolatorTest.java
    commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/util/MathUtilsTest.java

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ConvergingAlgorithm.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ConvergingAlgorithm.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ConvergingAlgorithm.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ConvergingAlgorithm.java
Sun Dec  5 12:40:48 2010
@@ -31,6 +31,7 @@ package org.apache.commons.math;
  * currently is also contained in {@link org.apache.commons.math.optimization.SimpleRealPointChecker}
  * and similar classes.
  */
+@Deprecated
 public interface ConvergingAlgorithm {
 
     /**

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ConvergingAlgorithmImpl.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ConvergingAlgorithmImpl.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ConvergingAlgorithmImpl.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ConvergingAlgorithmImpl.java
Sun Dec  5 12:40:48 2010
@@ -57,6 +57,7 @@ public abstract class ConvergingAlgorith
      * @deprecated in 2.2. Derived classes should use the "setter" methods
      * in order to assign meaningful values to all the instances variables.
      */
+    @Deprecated
     protected ConvergingAlgorithmImpl(final int defaultMaximalIterationCount,
                                       final double defaultAbsoluteAccuracy) {
         this.defaultAbsoluteAccuracy = defaultAbsoluteAccuracy;
@@ -75,6 +76,7 @@ public abstract class ConvergingAlgorith
      * @deprecated in 2.2 (to be removed as soon as the single non-default one
      * has been removed).
      */
+    @Deprecated
     protected ConvergingAlgorithmImpl() {}
 
     /** {@inheritDoc} */

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/FunctionEvaluationException.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/FunctionEvaluationException.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/FunctionEvaluationException.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/FunctionEvaluationException.java
Sun Dec  5 12:40:48 2010
@@ -32,6 +32,7 @@ import org.apache.commons.math.linear.Ar
  * @deprecated in 2.2 (to be removed in 3.0). Please use
  * {@link org.apache.commons.math.exception.MathUserException} instead.
  */
+@Deprecated
 public class FunctionEvaluationException extends MathUserException  {
 
     /** Serializable version identifier. */

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/MathRuntimeException.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/MathRuntimeException.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/MathRuntimeException.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/MathRuntimeException.java
Sun Dec  5 12:40:48 2010
@@ -558,6 +558,7 @@ public class MathRuntimeException extend
      * @deprecated in 2.2. Please use {@link org.apache.commons.math.exception.MathUnsupportedOperationException}
      * instead.
      */
+    @Deprecated
     public static UnsupportedOperationException createUnsupportedOperationException(final
Localizable pattern,
                                                                                     final
Object ... arguments) {
         return new UnsupportedOperationException() {
@@ -603,6 +604,7 @@ public class MathRuntimeException extend
      * @since 2.2
      * @deprecated in 2.2. Checks for "null" must not be performed in Commons-Math.
      */
+    @Deprecated
     public static NullPointerException createNullPointerException(final Localizable pattern,
                                                                   final Object ... arguments)
{
         return new NullPointerException() {

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/BinaryFunction.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/BinaryFunction.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/BinaryFunction.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/BinaryFunction.java
Sun Dec  5 12:40:48 2010
@@ -29,6 +29,7 @@ import org.apache.commons.math.util.Fast
  * @version $Revision$ $Date$
  * @deprecated in 2.2
  */
+@Deprecated
 public abstract class BinaryFunction implements BivariateRealFunction {
 
     /** The + operator method wrapped as a {@link BinaryFunction}. */

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/ComposableFunction.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/ComposableFunction.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/ComposableFunction.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/ComposableFunction.java
Sun Dec  5 12:40:48 2010
@@ -28,6 +28,7 @@ import org.apache.commons.math.util.Fast
  * @version $Revision$ $Date$
  * @deprecated in 2.2
  */
+@Deprecated
 public abstract class ComposableFunction implements UnivariateRealFunction {
 
     /** The constant function always returning 0. */

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/interpolation/SmoothingBicubicSplineInterpolator.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/interpolation/SmoothingBicubicSplineInterpolator.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/interpolation/SmoothingBicubicSplineInterpolator.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/interpolation/SmoothingBicubicSplineInterpolator.java
Sun Dec  5 12:40:48 2010
@@ -40,6 +40,7 @@ import org.apache.commons.math.exception
  * {@link org.apache.commons.math.analysis.interpolation.SmoothingPolynomialBicubicSplineInterpolator}.
  * This class will be removed in math 3.0.
  */
+@Deprecated
 public class SmoothingBicubicSplineInterpolator
     implements BivariateRealGridInterpolator {
     /**

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/BisectionSolver.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/BisectionSolver.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/BisectionSolver.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/BisectionSolver.java
Sun Dec  5 12:40:48 2010
@@ -71,6 +71,7 @@ public class BisectionSolver extends Uni
      * {@inheritDoc}
      * @deprecated in 2.2 (to be removed in 3.0).
      */
+    @Deprecated
     public double solve(final UnivariateRealFunction f, double min, double max, double initial)
         throws MaxIterationsExceededException, MathUserException {
         return solve(f, min, max);
@@ -95,6 +96,7 @@ public class BisectionSolver extends Uni
      * {@inheritDoc}
      * @deprecated in 2.2 (to be removed in 3.0).
      */
+    @Deprecated
     public double solve(final UnivariateRealFunction f, double min, double max)
         throws MaxIterationsExceededException, MathUserException {
 

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolver.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolver.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolver.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolver.java
Sun Dec  5 12:40:48 2010
@@ -186,6 +186,7 @@ public interface UnivariateRealSolver ex
      * @deprecated in 2.2 (to be removed in 3.0). Please use
      * {@link #solve(int,UnivariateRealFunction,double,double,double)} instead.
      */
+    @Deprecated
     double solve(UnivariateRealFunction f, double min, double max, double startValue)
         throws ConvergenceException, MathUserException, IllegalArgumentException;
 

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolverImpl.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolverImpl.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolverImpl.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolverImpl.java
Sun Dec  5 12:40:48 2010
@@ -32,6 +32,7 @@ import org.apache.commons.math.exception
  * @version $Revision$ $Date$
  * @deprecated in 2.2 (to be removed in 3.0).
  */
+@Deprecated
 public abstract class UnivariateRealSolverImpl
     extends ConvergingAlgorithmImpl implements UnivariateRealSolver {
 

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/BetaDistributionImpl.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/BetaDistributionImpl.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/BetaDistributionImpl.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/BetaDistributionImpl.java
Sun Dec  5 12:40:48 2010
@@ -129,6 +129,7 @@ public class BetaDistributionImpl
      * @return The pdf at point x.
      * @deprecated
      */
+    @Deprecated
     public double density(Double x) {
         return density(x.doubleValue());
     }

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/ChiSquaredDistributionImpl.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/ChiSquaredDistributionImpl.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/ChiSquaredDistributionImpl.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/ChiSquaredDistributionImpl.java
Sun Dec  5 12:40:48 2010
@@ -115,6 +115,7 @@ public class ChiSquaredDistributionImpl
      * @return The pdf at point x.
      * @deprecated
      */
+    @Deprecated
     public double density(Double x) {
         return density(x.doubleValue());
     }

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/ExponentialDistributionImpl.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/ExponentialDistributionImpl.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/ExponentialDistributionImpl.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/ExponentialDistributionImpl.java
Sun Dec  5 12:40:48 2010
@@ -105,6 +105,7 @@ public class ExponentialDistributionImpl
      * @return The pdf at point x.
      * @deprecated - use density(double)
      */
+    @Deprecated
     public double density(Double x) {
         return density(x.doubleValue());
     }

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/GammaDistributionImpl.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/GammaDistributionImpl.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/GammaDistributionImpl.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/GammaDistributionImpl.java
Sun Dec  5 12:40:48 2010
@@ -213,6 +213,7 @@ public class GammaDistributionImpl exten
      * @return The pdf at point x.
      * @deprecated
      */
+    @Deprecated
     public double density(Double x) {
         return density(x.doubleValue());
     }

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/HasDensity.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/HasDensity.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/HasDensity.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/HasDensity.java
Sun Dec  5 12:40:48 2010
@@ -31,6 +31,7 @@ import org.apache.commons.math.MathExcep
  * @deprecated to be removed in math 3.0
  * @version $Revision$ $Date$
  */
+@Deprecated
 public interface HasDensity<P> {
 
     /**

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/NormalDistributionImpl.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/NormalDistributionImpl.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/NormalDistributionImpl.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/distribution/NormalDistributionImpl.java
Sun Dec  5 12:40:48 2010
@@ -153,6 +153,7 @@ public class NormalDistributionImpl exte
      * @return The pdf at point x.
      * @deprecated
      */
+    @Deprecated
     public double density(Double x) {
         return density(x.doubleValue());
     }

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/linear/MatrixVisitorException.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/linear/MatrixVisitorException.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/linear/MatrixVisitorException.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/linear/MatrixVisitorException.java
Sun Dec  5 12:40:48 2010
@@ -27,6 +27,7 @@ import org.apache.commons.math.exception
  * @deprecated in 2.2 (to be removed in 3.0). Please use
  * {@link org.apache.commons.math.exception.MathUserException} instead.
  */
+@Deprecated
 public class MatrixVisitorException extends MathUserException {
 
     /** Serializable version identifier */

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/linear/RealVector.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/linear/RealVector.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/linear/RealVector.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/linear/RealVector.java
Sun Dec  5 12:40:48 2010
@@ -255,6 +255,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapPow(double d);
 
     /**
@@ -268,6 +269,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapPowToSelf(double d);
 
     /**
@@ -279,6 +281,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapExp();
 
     /**
@@ -291,6 +294,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapExpToSelf();
 
     /**
@@ -301,6 +305,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapExpm1();
 
     /**
@@ -312,6 +317,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapExpm1ToSelf();
 
     /**
@@ -322,6 +328,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapLog();
 
     /**
@@ -333,6 +340,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapLogToSelf();
 
     /**
@@ -343,6 +351,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapLog10();
 
     /**
@@ -354,6 +363,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapLog10ToSelf();
 
     /**
@@ -364,6 +374,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapLog1p();
 
     /**
@@ -375,6 +386,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapLog1pToSelf();
 
     /**
@@ -385,6 +397,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapCosh();
 
     /**
@@ -396,6 +409,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapCoshToSelf();
 
     /**
@@ -406,6 +420,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapSinh();
 
     /**
@@ -417,6 +432,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapSinhToSelf();
 
     /**
@@ -427,6 +443,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapTanh();
 
     /**
@@ -438,6 +455,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapTanhToSelf();
 
     /**
@@ -448,6 +466,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapCos();
 
     /**
@@ -459,6 +478,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapCosToSelf();
 
     /**
@@ -469,6 +489,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapSin();
 
     /**
@@ -480,6 +501,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapSinToSelf();
 
     /**
@@ -490,6 +512,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapTan();
 
     /**
@@ -501,6 +524,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapTanToSelf();
 
     /**
@@ -511,6 +535,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapAcos();
 
     /**
@@ -522,6 +547,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapAcosToSelf();
 
     /**
@@ -532,6 +558,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapAsin();
 
     /**
@@ -543,6 +570,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapAsinToSelf();
 
     /**
@@ -553,6 +581,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapAtan();
 
     /**
@@ -564,6 +593,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapAtanToSelf();
 
     /**
@@ -574,6 +604,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapInv();
 
     /**
@@ -585,6 +616,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapInvToSelf();
 
     /**
@@ -595,6 +627,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapAbs();
 
     /**
@@ -606,6 +639,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapAbsToSelf();
 
     /**
@@ -616,6 +650,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapSqrt();
 
     /**
@@ -627,6 +662,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapSqrtToSelf();
 
     /**
@@ -637,6 +673,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapCbrt();
 
     /**
@@ -648,6 +685,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapCbrtToSelf();
 
     /**
@@ -658,6 +696,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapCeil();
 
     /**
@@ -669,6 +708,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapCeilToSelf();
 
     /**
@@ -679,6 +719,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapFloor();
 
     /**
@@ -690,6 +731,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapFloorToSelf();
 
     /**
@@ -700,6 +742,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapRint();
 
     /**
@@ -711,6 +754,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapRintToSelf();
 
     /**
@@ -721,6 +765,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapSignum();
 
     /**
@@ -732,6 +777,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapSignumToSelf();
 
     /**
@@ -742,6 +788,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapUlp();
 
     /**
@@ -753,6 +800,7 @@ public interface RealVector {
      * the function classes in package
      * {@link org.apache.commons.math.analysis.function}.
      */
+    @Deprecated
     RealVector mapUlpToSelf();
 
     /**

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ode/DerivativeException.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ode/DerivativeException.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ode/DerivativeException.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/ode/DerivativeException.java
Sun Dec  5 12:40:48 2010
@@ -30,6 +30,7 @@ import org.apache.commons.math.exception
  * @deprecated in 2.2 (to be removed in 3.0). Please use
  * {@link org.apache.commons.math.exception.MathUserException} instead.
  */
+@Deprecated
 public class DerivativeException extends MathUserException {
 
   /** Serializable version identifier */

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/optimization/general/AbstractScalarDifferentiableOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/optimization/general/AbstractScalarDifferentiableOptimizer.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/optimization/general/AbstractScalarDifferentiableOptimizer.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/optimization/general/AbstractScalarDifferentiableOptimizer.java
Sun Dec  5 12:40:48 2010
@@ -42,6 +42,7 @@ public abstract class AbstractScalarDiff
      * @deprecated in 2.2 (to be removed in 3.0). Please use the accessor
      * {@link BaseAbstractScalarOptimizer#getConvergenceChecker()} instead.
      */
+    @Deprecated
     protected RealConvergenceChecker checker;
     /**
      * Type of optimization.
@@ -49,10 +50,12 @@ public abstract class AbstractScalarDiff
      * @deprecated in 2.2 (to be removed in 3.0). Please use the accessor
      * {@link BaseAbstractScalarOptimizer#getGoalType()} instead.
      */
+    @Deprecated
     protected GoalType goal;
     /** Current point set.
      * @deprecated in 2.2 (to be removed in 3.0).
      */
+    @Deprecated
     protected double[] point;
 
     /** Number of gradient evaluations. */

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/optimization/univariate/AbstractUnivariateRealOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/optimization/univariate/AbstractUnivariateRealOptimizer.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/optimization/univariate/AbstractUnivariateRealOptimizer.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/optimization/univariate/AbstractUnivariateRealOptimizer.java
Sun Dec  5 12:40:48 2010
@@ -66,6 +66,7 @@ public abstract class AbstractUnivariate
      * values to the maximum numbers of iterations and evaluations, and to the
      * absolute and relative accuracy thresholds.
      */
+    @Deprecated
     protected AbstractUnivariateRealOptimizer(final int defaultMaximalIterationCount,
                                               final double defaultAbsoluteAccuracy) {
         super(defaultMaximalIterationCount, defaultAbsoluteAccuracy);
@@ -84,6 +85,7 @@ public abstract class AbstractUnivariate
      * @throws NoDataException if no result has been computed
      * @deprecated in 2.2 (no alternative).
      */
+    @Deprecated
     protected void checkResultComputed() {
         if (!resultComputed) {
             throw new NoDataException();
@@ -115,6 +117,7 @@ public abstract class AbstractUnivariate
      * @param iterationCount the iteration count to set
      * @deprecated in 2.2 (no alternative).
      */
+    @Deprecated
     protected final void setResult(final double x, final double fx,
                                    final int iterationCount) {
         this.result         = x;
@@ -127,6 +130,7 @@ public abstract class AbstractUnivariate
      * Convenience function for implementations.
      * @deprecated in 2.2 (no alternative).
      */
+    @Deprecated
     protected final void clearResult() {
         this.resultComputed = false;
     }
@@ -181,6 +185,7 @@ public abstract class AbstractUnivariate
      * @deprecated in 2.2. Use this {@link #computeObjectiveValue(double)
      * replacement} instead.
      */
+    @Deprecated
     protected double computeObjectiveValue(final UnivariateRealFunction f,
                                            final double point)
         throws MathUserException {

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/stat/inference/TTestImpl.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/stat/inference/TTestImpl.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/stat/inference/TTestImpl.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/stat/inference/TTestImpl.java
Sun Dec  5 12:40:48 2010
@@ -38,6 +38,7 @@ public class TTestImpl implements TTest 
     /** Distribution used to compute inference statistics.
      * @deprecated in 2.2 (to be removed in 3.0).
      */
+    @Deprecated
     private TDistribution distribution;
 
     /**
@@ -54,6 +55,7 @@ public class TTestImpl implements TTest 
      * @since 1.2
      * @deprecated in 2.2 (to be removed in 3.0).
      */
+    @Deprecated
     public TTestImpl(TDistribution t) {
         super();
         setDistribution(t);
@@ -1020,6 +1022,7 @@ public class TTestImpl implements TTest 
      * @since 1.2
      * @deprecated in 2.2 (to be removed in 3.0).
      */
+    @Deprecated
     public void setDistribution(TDistribution value) {
         distribution = value;
     }

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/stat/regression/SimpleRegression.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/stat/regression/SimpleRegression.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/stat/regression/SimpleRegression.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/stat/regression/SimpleRegression.java
Sun Dec  5 12:40:48 2010
@@ -104,6 +104,7 @@ public class SimpleRegression implements
      * @deprecated in 2.2 (to be removed in 3.0). Please use the {@link
      * #SimpleRegression(int) other constructor} instead.
      */
+    @Deprecated
     public SimpleRegression(TDistribution t) {
         super();
         setDistribution(t);
@@ -626,6 +627,7 @@ public class SimpleRegression implements
      * @since 1.2
      * @deprecated in 2.2 (to be removed in 3.0).
      */
+    @Deprecated
     public void setDistribution(TDistribution value) {
         distribution = value;
 

Modified: commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/util/MathUtils.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/util/MathUtils.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/util/MathUtils.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/main/java/org/apache/commons/math/util/MathUtils.java
Sun Dec  5 12:40:48 2010
@@ -419,6 +419,7 @@ public final class MathUtils {
      * useful (see e.g. {@link #equalsIncludingNaN(double,double)
      * equalsIncludingNaN}.
      */
+    @Deprecated
     public static boolean equals(double x, double y) {
         return (Double.isNaN(x) && Double.isNaN(y)) || x == y;
     }
@@ -531,6 +532,7 @@ public final class MathUtils {
      * useful (see e.g. {@link #equalsIncludingNaN(double[],double[])
      * equalsIncludingNaN}.
      */
+    @Deprecated
     public static boolean equals(double[] x, double[] y) {
         if ((x == null) || (y == null)) {
             return !((x == null) ^ (y == null));
@@ -1914,6 +1916,7 @@ public final class MathUtils {
      * @deprecated as of 2.2 (please use the new {@link #checkOrder(double[],OrderDirection,boolean)
      * checkOrder} method). To be removed in 3.0.
      */
+    @Deprecated
     public static void checkOrder(double[] val, int dir, boolean strict) {
         if (dir > 0) {
             checkOrder(val, OrderDirection.INCREASING, strict);

Modified: commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/FunctionEvaluationExceptionTest.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/FunctionEvaluationExceptionTest.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/FunctionEvaluationExceptionTest.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/FunctionEvaluationExceptionTest.java
Sun Dec  5 12:40:48 2010
@@ -27,6 +27,7 @@ import junit.framework.TestCase;
  * @version $Revision$ $Date$
  * @deprecated in 2.2 (to be removed in 3.0)
  */
+@Deprecated
 public class FunctionEvaluationExceptionTest extends TestCase {
 
     public void testConstructor(){

Modified: commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/analysis/interpolation/SmoothingBicubicSplineInterpolatorTest.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/analysis/interpolation/SmoothingBicubicSplineInterpolatorTest.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/analysis/interpolation/SmoothingBicubicSplineInterpolatorTest.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/analysis/interpolation/SmoothingBicubicSplineInterpolatorTest.java
Sun Dec  5 12:40:48 2010
@@ -28,6 +28,7 @@ import org.junit.Test;
  * @version $Revision$ $Date$ 
  * @deprecated To be removed in math 3.0 (when the class for which it is a test will also
be removed).
  */
+@Deprecated
 public final class SmoothingBicubicSplineInterpolatorTest {
     /**
      * Test preconditions.

Modified: commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/util/MathUtilsTest.java
URL: http://svn.apache.org/viewvc/commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/util/MathUtilsTest.java?rev=1042336&r1=1042335&r2=1042336&view=diff
==============================================================================
--- commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/util/MathUtilsTest.java
(original)
+++ commons/proper/math/branches/MATH_2_X/src/test/java/org/apache/commons/math/util/MathUtilsTest.java
Sun Dec  5 12:40:48 2010
@@ -439,6 +439,7 @@ public final class MathUtilsTest extends
      * @deprecated To be removed in release 3.0 (replaced by {@link
      * #testArrayEqualsIncludingNaN()}.
      */
+    @Deprecated
     public void testArrayEquals() {
         assertFalse(MathUtils.equals(new double[] { 1d }, null));
         assertFalse(MathUtils.equals(null, new double[] { 1d }));



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