cocoon-dev mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From bugzi...@apache.org
Subject DO NOT REPLY [Bug 33811] New: - iHOP - Information Hyperlinked over Proteins
Date Wed, 02 Mar 2005 17:11:07 GMT
DO NOT REPLY TO THIS EMAIL, BUT PLEASE POST YOUR BUG·
RELATED COMMENTS THROUGH THE WEB INTERFACE AVAILABLE AT
<http://issues.apache.org/bugzilla/show_bug.cgi?id=33811>.
ANY REPLY MADE TO THIS MESSAGE WILL NOT BE COLLECTED AND·
INSERTED IN THE BUG DATABASE.

http://issues.apache.org/bugzilla/show_bug.cgi?id=33811

           Summary: iHOP - Information Hyperlinked over Proteins
           Product: Cocoon 2
           Version: 2.1.5
          Platform: Sun
               URL: http://www.pdg.cnb.uam.es/UniPub/iHOP/
        OS/Version: Windows XP
            Status: NEW
          Severity: normal
          Priority: P2
         Component: sitemap components
        AssignedTo: dev@cocoon.apache.org
        ReportedBy: hoffmann@cnb.uam.es


Dear Cocoon team!

First of all, thanks! Cocoon rocks. I am working in Bioinformatics and I created
a system to navigate the biomedical literature. The webservice-part is based
entirely on Cocoon and uses XSL, XSP and DB-pools. 
The system serves about 2 million different biomedical abstracts and about
200000 different pages for 30000 genes. The current number of daily visits is
about 7000 different IPs.

I would be very proud to see the iHOP system announced on your website as a
"Cocoon Live Site".

Thank you very much!

Best wishes,

Robert

Descrition:
---
iHOP - Information Hyperlinked over Proteins
 
By employing genes and proteins as hyperlinks between sentences and abstracts,
the information in PubMed can be converted into one navigable resource. iHOP is
an online service that provides this gene guided network as a natural way of
accessing the more than twelve million abstracts in PubMed and brings all the
advantages of the internet to scientific literature research.
The actual network provided in iHOP contains two million sentences and 30000
different genes from human, mouse, Drosophila, C. elegans, zebrafish,
Arabidopsis, yeast and E. coli.

Hoffmann, R., Valencia, A. A Gene Network for Navigating the Literature. Nature
Genetics 36, 664 (2004)

Contact: hoffmann@cnb.uam.es

---
* How can we verify this site is actually built with Cocoon?
- Credit is given to the Cocoon project on the first page of iHOP. 
- Calling "http://www.pdg.cnb.uam.es/UniPub/iHOP/nil/anything" for example will
give the cocoon message.

* How much time did it take to build the site from design to publication?
about 12 month 

* How many people were involved in the project?
1 

* How much traffic does the site handle?
7000 different IPs per day.

* What made you choose Cocoon to build the site?
A book about XML. The fact that my underlying data is in XML (2 million
scientific papers and about 200000 pages for 30000 different genes).

* What other information do you want to disclose (e.g. how does it work, how did
you build it, what parts of Cocoon did you use)?
I use XSL, XSP and the DB-pool.

-- 
Configure bugmail: http://issues.apache.org/bugzilla/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.

Mime
View raw message