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From r...@apache.org
Subject [29/51] [partial] clerezza git commit: CLEREZZA-966: started hierarchical project structure, moved platform bundles to platform, only moved RDF artifacts ported to use commons to the rdf folder.
Date Sun, 22 Mar 2015 12:11:25 GMT
http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation.viewer/pom.xml
----------------------------------------------------------------------
diff --git a/platform.documentation.viewer/pom.xml b/platform.documentation.viewer/pom.xml
deleted file mode 100644
index 1d9be7c..0000000
--- a/platform.documentation.viewer/pom.xml
+++ /dev/null
@@ -1,65 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?><project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements.  See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership.  The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License.  You may obtain a copy of the License at
-
-   http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied.  See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-    <modelVersion>4.0.0</modelVersion>
-
-    <parent>
-        <groupId>org.apache.clerezza</groupId>
-        <artifactId>clerezza</artifactId>
-        <version>0.5</version>
-        <relativePath>../parent</relativePath>
-    </parent>
-    <groupId>org.apache.clerezza</groupId>
-    <artifactId>platform.documentation.viewer</artifactId>
-    <version>1.0.0-SNAPSHOT</version>
-    <packaging>bundle</packaging>
-
-    <name>Clerezza - Platform Documentation Viewer</name>
-    <description>Presents the documentation of the Clerezza Platform
-    </description>
-    <dependencies>
-        <dependency>
-            <groupId>javax.ws.rs</groupId>
-            <artifactId>jsr311-api</artifactId>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.clerezza</groupId>
-            <artifactId>rdf.utils</artifactId>
-            <version>0.14</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.clerezza</groupId>
-            <artifactId>platform.documentation</artifactId>
-            <version>0.4</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.clerezza</groupId>
-            <artifactId>jaxrs.utils</artifactId>
-            <version>0.9</version>
-        </dependency>
-        <dependency>
-            <groupId>junit</groupId>
-            <artifactId>junit</artifactId>
-            <scope>test</scope>
-        </dependency>
-    </dependencies>
-</project>
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation.viewer/src/main/java/org/apache/clerezza/platform/documentation/viewer/DocumentationViewer.java
----------------------------------------------------------------------
diff --git a/platform.documentation.viewer/src/main/java/org/apache/clerezza/platform/documentation/viewer/DocumentationViewer.java b/platform.documentation.viewer/src/main/java/org/apache/clerezza/platform/documentation/viewer/DocumentationViewer.java
deleted file mode 100644
index 32ad8d7..0000000
--- a/platform.documentation.viewer/src/main/java/org/apache/clerezza/platform/documentation/viewer/DocumentationViewer.java
+++ /dev/null
@@ -1,238 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-package org.apache.clerezza.platform.documentation.viewer;
-
-import java.io.StringWriter;
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.Stack;
-import javax.ws.rs.GET;
-import javax.ws.rs.Path;
-import javax.ws.rs.core.Context;
-import javax.ws.rs.core.Response;
-import javax.ws.rs.core.UriInfo;
-import org.apache.clerezza.jaxrs.utils.TrailingSlash;
-import org.apache.clerezza.platform.documentation.DocumentationProvider;
-import org.apache.clerezza.rdf.core.BNode;
-import org.apache.clerezza.rdf.core.Graph;
-import org.apache.clerezza.rdf.core.LiteralFactory;
-import org.apache.clerezza.rdf.core.MGraph;
-import org.apache.clerezza.rdf.core.Triple;
-import org.apache.clerezza.rdf.core.UriRef;
-import org.apache.clerezza.rdf.core.access.TcManager;
-import org.apache.clerezza.rdf.core.impl.PlainLiteralImpl;
-import org.apache.clerezza.rdf.core.impl.SimpleMGraph;
-import org.apache.clerezza.rdf.core.impl.TripleImpl;
-import org.apache.clerezza.rdf.ontologies.DISCOBITS;
-import org.apache.clerezza.rdf.ontologies.RDF;
-import org.apache.clerezza.rdf.ontologies.DOCUMENTATION;
-import org.apache.clerezza.rdf.utils.GraphNode;
-import org.apache.clerezza.rdf.utils.UnionMGraph;
-
-/**
- *
- * The documentation viewer provides a webpage that shows the available
- * documentation.
- *
- * @scr.component
- * @scr.service interface="java.lang.Object"
- * @scr.property name="javax.ws.rs" type="Boolean" value="true"
- *
- * @author mir
- */
-@Path("/documentation")
-public class DocumentationViewer {
-
-    /**
-     * @scr.reference
-     */
-    private TcManager tcManager;
-        
-    /**
-     * Redirects to the overview page
-     *
-     * @return {@link Response}
-     *
-     */
-    @GET
-    public GraphNode documentationPage(@Context UriInfo uriInfo) {
-        TrailingSlash.enforcePresent(uriInfo);
-        Graph documentations = tcManager.getGraph(
-                DocumentationProvider.DOCUMENTATION_GRAPH_URI);        
-        Collection<DocumentationItem> docItems = getDocItems(documentations);        
-        List<DocumentationItem> sortedDocItems = sortDocItems(docItems);        
-        MGraph mGraph = new SimpleMGraph();
-        BNode orderedContent = createOrderedContent(sortedDocItems, mGraph);
-        BNode titledContent = createTitledContent(orderedContent, mGraph);
-        MGraph resultGraph = new UnionMGraph(mGraph, documentations);
-        GraphNode resultNode = new GraphNode(titledContent, resultGraph);
-        return resultNode;
-    }
-
-    private Collection<DocumentationItem> getDocItems(Graph documentations) {
-        Iterator<Triple> docs = documentations.filter(null, 
-                DOCUMENTATION.documentation, null);        
-
-        Map<UriRef,DocumentationItem> uri2docItemObj = 
-            new HashMap<UriRef,DocumentationItem>();
-        
-        while (docs.hasNext()) {
-            Triple docc = docs.next();
-            UriRef docItem = (UriRef) docc.getObject();
-            Iterator<Triple> afterDocItemsIter = documentations.filter(docItem,
-                DOCUMENTATION.after, null);
-            Set<UriRef> afterDocItems = new HashSet<UriRef>();
-            while (afterDocItemsIter.hasNext()) {
-                afterDocItems.add((UriRef) afterDocItemsIter.next().getObject());
-            }
-            DocumentationItem docItemObj = new DocumentationItem(
-                    docItem, afterDocItems, uri2docItemObj);
-            uri2docItemObj.put(docItem, docItemObj);
-        }        
-        return uri2docItemObj.values();
-    }
-
-    protected List<DocumentationItem> sortDocItems(
-        Collection<DocumentationItem> docItems) {
-        List<DocumentationItem> result = 
-                new ArrayList<DocumentationItem>();
-        Iterator<DocumentationItem> items = docItems.iterator();
-
-        OUTER: while (items.hasNext()) {
-            DocumentationItem item = items.next();
-            for (int i = 0; i < result.size(); i++ ) {
-                if (result.get(i).isAfer(item.documentationItem)) {
-                    result.add(i, item);
-                    continue OUTER;
-                }
-            }
-            result.add(item);
-        }
-        return result;
-    }
-
-    private BNode createOrderedContent(List<DocumentationItem> sortedDocItems,
-        MGraph mGraph) {
-        BNode orderedContent = new BNode();
-        mGraph.add(new TripleImpl(orderedContent, RDF.type, DISCOBITS.OrderedContent));
-        Integer pos = 0;
-        Iterator<DocumentationItem> docItemObjsIter = sortedDocItems.iterator();
-        while (docItemObjsIter.hasNext()) {
-            DocumentationItem docItemObj = docItemObjsIter.next();
-            BNode containedDoc = new BNode();
-            mGraph.add(new TripleImpl(orderedContent, DISCOBITS.contains,
-                    containedDoc));
-            mGraph.add(new TripleImpl(containedDoc, DISCOBITS.pos,
-                    new PlainLiteralImpl(pos.toString())));
-            mGraph.add(new TripleImpl(containedDoc, DISCOBITS.holds,
-                    docItemObj.documentationItem));
-            pos++;
-        }
-        return orderedContent;
-    }
-
-    private BNode createTitledContent(BNode orderedContent, MGraph mGraph) {
-        BNode titledContent = new BNode();
-        mGraph.add(new TripleImpl(titledContent, RDF.type, DISCOBITS.TitledContent));
-        BNode title = new BNode();
-        mGraph.add(new TripleImpl(title, DISCOBITS.pos, new PlainLiteralImpl("0")));
-        BNode titleXml = new BNode();
-        mGraph.add(new TripleImpl(titleXml, RDF.type, DISCOBITS.XHTMLInfoDiscoBit));
-        mGraph.add(new TripleImpl(titleXml, DISCOBITS.infoBit,
-                LiteralFactory.getInstance().createTypedLiteral("Documentation")));
-        mGraph.add(new TripleImpl(title, DISCOBITS.holds, titleXml));
-        mGraph.add(new TripleImpl(title, RDF.type, DISCOBITS.Entry));
-        mGraph.add(new TripleImpl(titledContent, DISCOBITS.contains, title));        
-        BNode content = new BNode();
-        mGraph.add(new TripleImpl(content, DISCOBITS.pos, new PlainLiteralImpl("1")));
-        mGraph.add(new TripleImpl(content, DISCOBITS.holds, orderedContent));
-        mGraph.add(new TripleImpl(content, RDF.type, DISCOBITS.Entry));
-        mGraph.add(new TripleImpl(titledContent, DISCOBITS.contains, content));        
-        return titledContent;
-    }
-
-    protected static class DocumentationItem {
-
-        private UriRef documentationItem;
-        private Set<UriRef> afterDocItems;
-        
-        private boolean transitiveAfterDocItemsAdded = false;
-        private Map<UriRef, DocumentationItem> uri2docItemObj;
-
-        DocumentationItem(UriRef doumentationItem, Set<UriRef> explicitAfterDocItems,
-            Map<UriRef, DocumentationItem> uri2docItemObj) {
-            this.documentationItem = doumentationItem;
-            this.afterDocItems = explicitAfterDocItems;
-            this.uri2docItemObj = uri2docItemObj;
-        }
-
-        public boolean isAfer(UriRef docItem) {
-            return getAfterDocItems().contains(docItem);
-        }
-        
-        private Set<UriRef> getAfterDocItems() {
-            Stack<DocumentationItem> stack = new Stack<DocumentationItem>();
-            stack.add(this);
-            return getAfterDocItems(stack);
-        }
-        
-        private Set<UriRef> getAfterDocItems(Stack<DocumentationItem> stack) {
-            if (!transitiveAfterDocItemsAdded) {
-                Iterator<UriRef> afterDocUrisIter = afterDocItems.iterator();
-                while (afterDocUrisIter.hasNext()) {
-                    UriRef uriRef = afterDocUrisIter.next();
-                    DocumentationItem docItem = uri2docItemObj.get(uriRef);
-                    if (stack.contains(docItem)) {
-                        throw new RuntimeException("Documentation: cycle detected!\n"
-                            + stack.toString());
-                    }
-                    stack.add(docItem);
-                    afterDocItems.addAll(docItem.getAfterDocItems(stack));
-                    
-                }
-                transitiveAfterDocItemsAdded = true;
-            }             
-            return afterDocItems;
-        }
-
-        @Override
-        public String toString() {
-            StringWriter writer = new StringWriter();
-            writer.append("[");
-            writer.append(documentationItem.getUnicodeString());
-            writer.append(" is after (");
-            Iterator<UriRef> afterDocs = afterDocItems.iterator();
-            while (afterDocs.hasNext()) {
-                UriRef uriRef = afterDocs.next();
-                writer.append(uriRef.getUnicodeString());
-                if (afterDocs.hasNext()) {
-                    writer.append(",");
-                }
-            }
-            writer.append(")]");
-            return writer.toString();
-        }
-    }
-}

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation.viewer/src/main/resources/META-INF/documentation.nt
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diff --git a/platform.documentation.viewer/src/main/resources/META-INF/documentation.nt b/platform.documentation.viewer/src/main/resources/META-INF/documentation.nt
deleted file mode 100644
index 1a3a6f4..0000000
--- a/platform.documentation.viewer/src/main/resources/META-INF/documentation.nt
+++ /dev/null
@@ -1,26 +0,0 @@
-<bundle:///intro-content-el/0> <http://discobits.org/ontology#infoBit> "The documentation viewer provides access to the documentation (provided by the different modules) at <a xmlns=\"http://www.w3.org/1999/xhtml\" href=\"/documentation\">/documentation</a>."^^<http://www.w3.org/1999/02/22-rdf-syntax-ns#XMLLiteral> .
-<bundle:///intro-content-el/0> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#XHTMLInfoDiscoBit> .
-<bundle:///intro-content-el/1> <http://discobits.org/ontology#infoBit> "The documentation is ordered so that the after properties http://clerezza.org/2009/08/documentation#after are satisfied. When the documentation is written with the discobits editor such a property is typically set by adding something like the folleowing in the RDF editing mode to the xml element representing the resource: &lt;after xmlns=\"http://clerezza.org/2009/08/documentation#\" rdf:resource=\"bundle://org.apache.clerezza.platform.content/discobits-editor\"/ /&gt;"^^<http://www.w3.org/1999/02/22-rdf-syntax-ns#XMLLiteral> .
-<bundle:///intro-content-el/1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#XHTMLInfoDiscoBit> .
-<bundle:///intro-content> <http://discobits.org/ontology#contains> _:1e27a3b4f21eada7ec61fd7c55f2bd221 . 
-<bundle:///intro-content> <http://discobits.org/ontology#contains> _:86e4309edd82a6d415338546caff2d551 . 
-<bundle:///intro-content> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#OrderedContent> .
-<bundle:///intro-title> <http://discobits.org/ontology#infoBit> "Documentation Viewer"^^<http://www.w3.org/1999/02/22-rdf-syntax-ns#XMLLiteral> .
-<bundle:///intro-title> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#XHTMLInfoDiscoBit> .
-<bundle:///intro> <http://clerezza.org/2009/08/documentation#after> <bundle://org.apache.clerezza.platform.content/discobits-editor> .
-<bundle:///intro> <http://clerezza.org/2009/08/documentation#after> <bundle://org.apache.clerezza.platform.documentation/intro> .
-<bundle:///intro> <http://discobits.org/ontology#contains> _:cc06f094ff0d735a332291b856b0d4ae1 . 
-<bundle:///intro> <http://discobits.org/ontology#contains> _:ccd6d577f99d82c53d5323fdbe4b6ba31 . 
-<bundle:///intro> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#TitledContent> .
-_:1e27a3b4f21eada7ec61fd7c55f2bd221 <http://discobits.org/ontology#holds> <bundle:///intro-content-el/0> . 
-_:1e27a3b4f21eada7ec61fd7c55f2bd221 <http://discobits.org/ontology#pos> "0" . 
-_:1e27a3b4f21eada7ec61fd7c55f2bd221 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 
-_:86e4309edd82a6d415338546caff2d551 <http://discobits.org/ontology#holds> <bundle:///intro-content-el/1> . 
-_:86e4309edd82a6d415338546caff2d551 <http://discobits.org/ontology#pos> "1" . 
-_:86e4309edd82a6d415338546caff2d551 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 
-_:cc06f094ff0d735a332291b856b0d4ae1 <http://discobits.org/ontology#holds> <bundle:///intro-content> . 
-_:cc06f094ff0d735a332291b856b0d4ae1 <http://discobits.org/ontology#pos> "1" . 
-_:cc06f094ff0d735a332291b856b0d4ae1 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 
-_:ccd6d577f99d82c53d5323fdbe4b6ba31 <http://discobits.org/ontology#holds> <bundle:///intro-title> . 
-_:ccd6d577f99d82c53d5323fdbe4b6ba31 <http://discobits.org/ontology#pos> "0" . 
-_:ccd6d577f99d82c53d5323fdbe4b6ba31 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation.viewer/src/test/java/org/apache/clerezza/platform/documentation/viewer/SortTest.java
----------------------------------------------------------------------
diff --git a/platform.documentation.viewer/src/test/java/org/apache/clerezza/platform/documentation/viewer/SortTest.java b/platform.documentation.viewer/src/test/java/org/apache/clerezza/platform/documentation/viewer/SortTest.java
deleted file mode 100644
index a980223..0000000
--- a/platform.documentation.viewer/src/test/java/org/apache/clerezza/platform/documentation/viewer/SortTest.java
+++ /dev/null
@@ -1,143 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-package org.apache.clerezza.platform.documentation.viewer;
-
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import org.junit.Assert;
-import org.junit.Test;
-import org.apache.clerezza.rdf.core.UriRef;
-
-/**
- *
- * @author mir
- */
-public class SortTest {
-
-    @Test
-    public void sortTest() {
-        DocumentationViewer docViewer = new DocumentationViewer();
-
-        Map<UriRef,DocumentationViewer.DocumentationItem> uri2docItemObj =
-            new HashMap<UriRef,DocumentationViewer.DocumentationItem>();
-        UriRef ref1 = new UriRef("ref1");
-        UriRef ref2 = new UriRef("ref2");
-        UriRef ref3 = new UriRef("ref3");
-        UriRef ref4 = new UriRef("ref4");
-        UriRef ref5 = new UriRef("ref5");
-
-        Set<UriRef> set1 = new HashSet<UriRef>();
-        DocumentationViewer.DocumentationItem a =
-            new DocumentationViewer.DocumentationItem(ref1, set1, uri2docItemObj);
-
-        Set<UriRef> set2 = new HashSet<UriRef>();
-        set2.add(ref1);
-        DocumentationViewer.DocumentationItem b =
-            new DocumentationViewer.DocumentationItem(ref2, set2, uri2docItemObj);
-
-        Set<UriRef> set3 = new HashSet<UriRef>();
-        set3.add(ref2);
-        DocumentationViewer.DocumentationItem c =
-            new DocumentationViewer.DocumentationItem(ref3, set3, uri2docItemObj);
-
-        Set<UriRef> set4 = new HashSet<UriRef>();
-        set4.add(ref3);
-        DocumentationViewer.DocumentationItem d =
-            new DocumentationViewer.DocumentationItem(ref4, set4, uri2docItemObj);
-
-        Set<UriRef> set5 = new HashSet<UriRef>();
-        set5.add(ref4);
-        DocumentationViewer.DocumentationItem e =
-            new DocumentationViewer.DocumentationItem(ref5, set5, uri2docItemObj);
-
-        uri2docItemObj.put(ref2, b);
-        uri2docItemObj.put(ref4, d);
-        uri2docItemObj.put(ref1, a);
-        uri2docItemObj.put(ref3, c);
-        uri2docItemObj.put(ref5, e);
-
-        List<DocumentationViewer.DocumentationItem> orderedList = 
-            docViewer.sortDocItems(uri2docItemObj.values());
-
-        Iterator<DocumentationViewer.DocumentationItem> iter =
-            orderedList.iterator();
-
-        Object[] expecteds =
-            new DocumentationViewer.DocumentationItem[5];
-
-        expecteds[0] = a;
-        expecteds[1] = b;
-        expecteds[2] = c;
-        expecteds[3] = d;
-        expecteds[4] = e;
-
-        Assert.assertArrayEquals(expecteds, orderedList.toArray());
-    }
-
-    @Test(expected=RuntimeException.class)
-    public void cycleTest() {
-        DocumentationViewer docViewer = new DocumentationViewer();
-
-        Map<UriRef,DocumentationViewer.DocumentationItem> uri2docItemObj =
-            new HashMap<UriRef,DocumentationViewer.DocumentationItem>();
-        UriRef ref1 = new UriRef("ref1");
-        UriRef ref2 = new UriRef("ref2");
-        UriRef ref3 = new UriRef("ref3");
-        UriRef ref4 = new UriRef("ref4");
-        UriRef ref5 = new UriRef("ref5");
-
-        Set<UriRef> set1 = new HashSet<UriRef>();
-        set1.add(ref5);
-        DocumentationViewer.DocumentationItem a =
-            new DocumentationViewer.DocumentationItem(ref1, set1, uri2docItemObj);
-
-        Set<UriRef> set2 = new HashSet<UriRef>();
-        set2.add(ref1);
-        DocumentationViewer.DocumentationItem b =
-            new DocumentationViewer.DocumentationItem(ref2, set2, uri2docItemObj);
-
-        Set<UriRef> set3 = new HashSet<UriRef>();
-        set3.add(ref2);
-        DocumentationViewer.DocumentationItem c =
-            new DocumentationViewer.DocumentationItem(ref3, set3, uri2docItemObj);
-
-        Set<UriRef> set4 = new HashSet<UriRef>();
-        set4.add(ref3);
-        DocumentationViewer.DocumentationItem d =
-            new DocumentationViewer.DocumentationItem(ref4, set4, uri2docItemObj);
-
-        Set<UriRef> set5 = new HashSet<UriRef>();
-        set5.add(ref4);
-        DocumentationViewer.DocumentationItem e =
-            new DocumentationViewer.DocumentationItem(ref5, set5, uri2docItemObj);
-
-        uri2docItemObj.put(ref2, b);
-        uri2docItemObj.put(ref4, d);
-        uri2docItemObj.put(ref1, a);
-        uri2docItemObj.put(ref3, c);
-        uri2docItemObj.put(ref5, e);
-        
-        List<DocumentationViewer.DocumentationItem> orderedList =
-            docViewer.sortDocItems(uri2docItemObj.values());
-    }
-}

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation/LICENSE
----------------------------------------------------------------------
diff --git a/platform.documentation/LICENSE b/platform.documentation/LICENSE
deleted file mode 100644
index 261eeb9..0000000
--- a/platform.documentation/LICENSE
+++ /dev/null
@@ -1,201 +0,0 @@
-                                 Apache License
-                           Version 2.0, January 2004
-                        http://www.apache.org/licenses/
-
-   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
-
-   1. Definitions.
-
-      "License" shall mean the terms and conditions for use, reproduction,
-      and distribution as defined by Sections 1 through 9 of this document.
-
-      "Licensor" shall mean the copyright owner or entity authorized by
-      the copyright owner that is granting the License.
-
-      "Legal Entity" shall mean the union of the acting entity and all
-      other entities that control, are controlled by, or are under common
-      control with that entity. For the purposes of this definition,
-      "control" means (i) the power, direct or indirect, to cause the
-      direction or management of such entity, whether by contract or
-      otherwise, or (ii) ownership of fifty percent (50%) or more of the
-      outstanding shares, or (iii) beneficial ownership of such entity.
-
-      "You" (or "Your") shall mean an individual or Legal Entity
-      exercising permissions granted by this License.
-
-      "Source" form shall mean the preferred form for making modifications,
-      including but not limited to software source code, documentation
-      source, and configuration files.
-
-      "Object" form shall mean any form resulting from mechanical
-      transformation or translation of a Source form, including but
-      not limited to compiled object code, generated documentation,
-      and conversions to other media types.
-
-      "Work" shall mean the work of authorship, whether in Source or
-      Object form, made available under the License, as indicated by a
-      copyright notice that is included in or attached to the work
-      (an example is provided in the Appendix below).
-
-      "Derivative Works" shall mean any work, whether in Source or Object
-      form, that is based on (or derived from) the Work and for which the
-      editorial revisions, annotations, elaborations, or other modifications
-      represent, as a whole, an original work of authorship. For the purposes
-      of this License, Derivative Works shall not include works that remain
-      separable from, or merely link (or bind by name) to the interfaces of,
-      the Work and Derivative Works thereof.
-
-      "Contribution" shall mean any work of authorship, including
-      the original version of the Work and any modifications or additions
-      to that Work or Derivative Works thereof, that is intentionally
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-      to the Licensor or its representatives, including but not limited to
-      communication on electronic mailing lists, source code control systems,
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-      on behalf of whom a Contribution has been received by Licensor and
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-   2. Grant of Copyright License. Subject to the terms and conditions of
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-      worldwide, non-exclusive, no-charge, royalty-free, irrevocable
-      copyright license to reproduce, prepare Derivative Works of,
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-      Work and such Derivative Works in Source or Object form.
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-          or as an addendum to the NOTICE text from the Work, provided
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-      You may add Your own copyright statement to Your modifications and
-      may provide additional or different license terms and conditions
-      for use, reproduction, or distribution of Your modifications, or
-      for any such Derivative Works as a whole, provided Your use,
-      reproduction, and distribution of the Work otherwise complies with
-      the conditions stated in this License.
-
-   5. Submission of Contributions. Unless You explicitly state otherwise,
-      any Contribution intentionally submitted for inclusion in the Work
-      by You to the Licensor shall be under the terms and conditions of
-      this License, without any additional terms or conditions.
-      Notwithstanding the above, nothing herein shall supersede or modify
-      the terms of any separate license agreement you may have executed
-      with Licensor regarding such Contributions.
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-   6. Trademarks. This License does not grant permission to use the trade
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-      negligent acts) or agreed to in writing, shall any Contributor be
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-      on Your own behalf and on Your sole responsibility, not on behalf
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-      incurred by, or claims asserted against, such Contributor by reason
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-   END OF TERMS AND CONDITIONS
-
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-      boilerplate notice, with the fields enclosed by brackets "[]"
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-   Copyright [yyyy] [name of copyright owner]
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-   Licensed under the Apache License, Version 2.0 (the "License");
-   you may not use this file except in compliance with the License.
-   You may obtain a copy of the License at
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-       http://www.apache.org/licenses/LICENSE-2.0
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-   Unless required by applicable law or agreed to in writing, software
-   distributed under the License is distributed on an "AS IS" BASIS,
-   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-   See the License for the specific language governing permissions and
-   limitations under the License.

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation/pom.xml
----------------------------------------------------------------------
diff --git a/platform.documentation/pom.xml b/platform.documentation/pom.xml
deleted file mode 100644
index cd4b989..0000000
--- a/platform.documentation/pom.xml
+++ /dev/null
@@ -1,75 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?><project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements.  See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership.  The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License.  You may obtain a copy of the License at
-
-   http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied.  See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-    <modelVersion>4.0.0</modelVersion>
-    <parent>
-        <artifactId>clerezza</artifactId>
-        <groupId>org.apache.clerezza</groupId>
-        <version>0.5</version>
-        <relativePath>../parent</relativePath>
-    </parent>
-    <groupId>org.apache.clerezza</groupId>
-    <artifactId>platform.documentation</artifactId>
-    <version>1.0.0-SNAPSHOT</version>
-    <packaging>bundle</packaging>
-    <name>Clerezza - Platform Documentation</name>
-    <description>Manages the documentation of the Clerezza Platform
-    </description>
-    <dependencies>
-        <dependency>
-            <groupId>junit</groupId>
-            <artifactId>junit</artifactId>
-            <scope>test</scope>
-        </dependency>
-        <dependency>
-            <groupId>org.osgi</groupId>
-            <artifactId>org.osgi.compendium</artifactId>
-        </dependency>
-        <dependency>
-            <groupId>org.osgi</groupId>
-            <artifactId>org.osgi.core</artifactId>
-        </dependency>
-        <dependency>
-            <groupId>javax.ws.rs</groupId>
-            <artifactId>jsr311-api</artifactId>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.clerezza</groupId>
-            <artifactId>rdf.utils</artifactId>
-            <version>0.14</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.clerezza</groupId>
-            <artifactId>platform.graphprovider.content</artifactId>
-            <version>0.7</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.clerezza</groupId>
-            <artifactId>platform.config</artifactId>
-            <version>0.4</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.felix</groupId>
-            <artifactId>org.apache.felix.scr.annotations</artifactId>
-        </dependency>
-    </dependencies>
-</project>
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/DocumentationInContentGraph.java
----------------------------------------------------------------------
diff --git a/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/DocumentationInContentGraph.java b/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/DocumentationInContentGraph.java
deleted file mode 100644
index ad0ad8a..0000000
--- a/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/DocumentationInContentGraph.java
+++ /dev/null
@@ -1,54 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-package org.apache.clerezza.platform.documentation;
-
-import org.osgi.service.component.ComponentContext;
-import org.apache.clerezza.platform.graphprovider.content.ContentGraphProvider;
-
-/**
- * Registers the documentation graph as addition to the content graph
- * 
- * @scr.component
- * 
- * @author rbn, hasan
- */
-public class DocumentationInContentGraph {
-
-
-    /**
-     * we have this dependency to make sure we get started after the documentatinProvider
-     *
-     * @scr.reference
-     */
-    private DocumentationProvider documentationProvider;
-
-    /**
-     * @scr.reference
-     */
-    private ContentGraphProvider cgProvider;
-
-    protected void activate(final ComponentContext componentContext) {
-        cgProvider.addTemporaryAdditionGraph(DocumentationProvider.DOCUMENTATION_GRAPH_URI);
-    }
-
-    protected void deactivate(final ComponentContext componentContext) {
-        cgProvider.removeTemporaryAdditionGraph(DocumentationProvider.DOCUMENTATION_GRAPH_URI);
-    }
-    
-}

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/DocumentationProvider.java
----------------------------------------------------------------------
diff --git a/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/DocumentationProvider.java b/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/DocumentationProvider.java
deleted file mode 100644
index 3923a8b..0000000
--- a/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/DocumentationProvider.java
+++ /dev/null
@@ -1,274 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-package org.apache.clerezza.platform.documentation;
-
-import java.io.IOException;
-import java.net.URL;
-import java.util.Collections;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.Iterator;
-import java.util.Map;
-import java.util.Set;
-import org.apache.felix.scr.annotations.Component;
-import org.apache.felix.scr.annotations.Property;
-import org.apache.felix.scr.annotations.Reference;
-import org.apache.felix.scr.annotations.Service;
-import org.apache.felix.scr.annotations.Services;
-import org.osgi.framework.Bundle;
-import org.osgi.framework.BundleEvent;
-import org.osgi.framework.BundleListener;
-import org.osgi.service.component.ComponentContext;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-import org.apache.clerezza.platform.config.PlatformConfig;
-import org.apache.clerezza.rdf.core.Graph;
-import org.apache.clerezza.rdf.core.MGraph;
-import org.apache.clerezza.rdf.core.NonLiteral;
-import org.apache.clerezza.rdf.core.Triple;
-import org.apache.clerezza.rdf.core.TripleCollection;
-import org.apache.clerezza.rdf.core.UriRef;
-import org.apache.clerezza.rdf.core.access.EntityAlreadyExistsException;
-import org.apache.clerezza.rdf.core.access.EntityUndeletableException;
-import org.apache.clerezza.rdf.core.access.NoSuchEntityException;
-import org.apache.clerezza.rdf.core.access.WeightedTcProvider;
-import org.apache.clerezza.rdf.core.impl.SimpleGraph;
-import org.apache.clerezza.rdf.core.impl.SimpleMGraph;
-import org.apache.clerezza.rdf.core.impl.TripleImpl;
-import org.apache.clerezza.rdf.core.serializedform.Parser;
-import org.apache.clerezza.rdf.core.serializedform.SupportedFormat;
-import org.apache.clerezza.rdf.ontologies.DISCOBITS;
-import org.apache.clerezza.rdf.ontologies.DOCUMENTATION;
-import org.apache.clerezza.rdf.ontologies.OSGI;
-import org.apache.clerezza.rdf.ontologies.RDF;
-import org.apache.clerezza.rdf.utils.UnionMGraph;
-
-/**
- * The DocumentationProvider gathers the documentations of bundles and provides
- * a graph containing all documentations.
- * It is an implementation of <code>WeightedTcProvider</code> with the default
- * weight 30. 
- * @author mir, hasan
- */
-@Component
-@Services({
-    @Service(WeightedTcProvider.class),
-    @Service(DocumentationProvider.class)})
-@Property(name="weight", intValue=30)
-
-public class DocumentationProvider implements WeightedTcProvider, BundleListener {
-
-    private final Logger logger = LoggerFactory.getLogger(getClass());
-
-    /**
-     * File path to the file containing the documentation of the bundle
-     */
-    private static final String DOCUMENTATION_FILE = "/META-INF/documentation.nt";
-
-    @Reference
-    private PlatformConfig config;
-    
-    @Reference
-    private Parser parser;
-
-    /**
-     * Contains the map between bundles and their documentation-graph
-     */
-    private Map<Bundle, MGraph> bundle2DocGraphMap = new HashMap<Bundle, MGraph>();
-
-    /**
-     * UnionGraph which contains all documenation-graphs of the registered
-     * bundles
-     */
-    private Graph unitedDocumentations;
-
-    /**
-     * The URI of the graph containing the documentations
-     */
-    public static final UriRef DOCUMENTATION_GRAPH_URI =
-            new UriRef("urn:x-localinstance:/documentation.graph");
-
-    private int weight = 30;    
-
-    @Override
-    public int getWeight() {
-        return weight;
-    }
-
-    @Override
-    public Graph getGraph(UriRef name) throws NoSuchEntityException {
-        if (name.equals(DOCUMENTATION_GRAPH_URI)) {
-            return unitedDocumentations;
-        }
-        throw new NoSuchEntityException(name);
-    }
-
-    @Override
-    public MGraph getMGraph(UriRef name) throws NoSuchEntityException {
-        throw new NoSuchEntityException(name);
-    }
-
-    @Override
-    public TripleCollection getTriples(UriRef name) throws NoSuchEntityException {
-        return getGraph(name);
-    }
-
-    @Override
-    public Set<UriRef> listGraphs() {
-        return Collections.singleton(DOCUMENTATION_GRAPH_URI);
-    }
-
-    @Override
-    public Set<UriRef> listMGraphs() {
-        return new HashSet<UriRef>();
-    }
-
-    @Override
-    public Set<UriRef> listTripleCollections() {
-        return Collections.singleton(DOCUMENTATION_GRAPH_URI);
-    }
-
-    @Override
-    public MGraph createMGraph(UriRef name)
-            throws UnsupportedOperationException, EntityAlreadyExistsException {
-        throw new UnsupportedOperationException("Not supported.");
-    }
-
-    @Override
-    public Graph createGraph(UriRef name, TripleCollection triples)
-            throws UnsupportedOperationException, EntityAlreadyExistsException {
-        throw new UnsupportedOperationException("Not supported.");
-    }
-
-    @Override
-    public void deleteTripleCollection(UriRef name)
-            throws UnsupportedOperationException, NoSuchEntityException,
-            EntityUndeletableException {
-        throw new UnsupportedOperationException("Not supported.");
-    }
-
-    @Override
-    public Set<UriRef> getNames(Graph graph) {
-        final HashSet<UriRef> result = new HashSet<UriRef>();
-        if (unitedDocumentations.equals(graph)) {
-            result.add(DOCUMENTATION_GRAPH_URI);
-        }
-        return result;
-    }
-
-    @Override
-    public void bundleChanged(BundleEvent event) {
-        Bundle bundle = event.getBundle();
-        switch (event.getType()) {
-            case BundleEvent.STARTED:
-                registerDocumentation(bundle);
-                break;
-            case BundleEvent.STOPPED:
-                unregisterDocumentation(bundle);
-                break;
-        }
-        createUnionGraph();
-    }
-
-    protected void activate(final ComponentContext componentContext) {
-        componentContext.getBundleContext().addBundleListener(this);
-        weight = (Integer) componentContext.getProperties().get("weight");
-        registerExistingDocumentations(componentContext);
-        createUnionGraph();
-    }
-
-    protected void deactivate(final ComponentContext componentContext) {
-        componentContext.getBundleContext().removeBundleListener(this);
-    }    
-
-    private void registerExistingDocumentations(ComponentContext componentContext) {
-        Bundle[] bundles = componentContext.getBundleContext().getBundles();
-        for (Bundle bundle : bundles) {
-            if (bundle.getState() == Bundle.ACTIVE) {
-                registerDocumentation(bundle);
-            }
-        }
-    }
-
-    private void registerDocumentation(Bundle bundle) {
-        URL entry = bundle.getEntry(DOCUMENTATION_FILE);
-        if (entry == null) {
-            return;
-        }
-        MGraph docMGraph = getDocumentationMGraph(entry, bundle.getSymbolicName());
-        addAdditionalTriples(bundle, docMGraph);
-        bundle2DocGraphMap.put(bundle, docMGraph);
-        logger.info("Registered documentation of bundle: {}",
-                bundle.getSymbolicName());
-    }
-
-    private MGraph getDocumentationMGraph(URL docUrl, String symbolicName) {
-        try {
-            Graph parsedGraph = parser.parse(docUrl.openStream(),
-                    SupportedFormat.N_TRIPLE);
-            UriRef baseUri = config.getDefaultBaseUri();
-            return new SimpleMGraph(new UriMutatorIterator(
-                    parsedGraph.iterator(), baseUri.getUnicodeString(), symbolicName));
-        } catch (IOException ex) {
-            logger.warn("Cannot parse documentation at URL: {}", docUrl);
-            throw new RuntimeException(ex);
-        }
-    }
-
-    /**
-     * Adds triples that point from the bundle resource to its documentations.
-     *
-     * @param bundle
-     * @param docMGraph
-     */
-    private void addAdditionalTriples(Bundle bundle, MGraph docMGraph) {
-        UriRef bundleUri = new UriRef(bundle.getLocation());
-        Triple triple = new TripleImpl(bundleUri, RDF.type, OSGI.Bundle);
-        docMGraph.add(triple);
-        Iterator<Triple> titledContents = docMGraph.filter(null, RDF.type,
-                DISCOBITS.TitledContent);
-        Set<Triple> newTriples = new HashSet<Triple>();
-        for (Iterator<Triple> it = titledContents; it.hasNext();) {
-            NonLiteral titledContent = it.next().getSubject();
-            if (docMGraph.filter(null, DISCOBITS.holds, titledContent).hasNext()) {
-                continue;
-            }
-            triple = new TripleImpl(bundleUri, DOCUMENTATION.documentation,
-                    titledContent);
-            newTriples.add(triple);
-        }
-        docMGraph.addAll(newTriples);
-    }
-
-    private void unregisterDocumentation(Bundle bundle) {
-        bundle2DocGraphMap.remove(bundle);
-        logger.info("Unregistered documentation of bundle: {}",
-                bundle.getSymbolicName());
-    }
-
-    private void createUnionGraph() {
-        MGraph[] docGraphs = bundle2DocGraphMap.values().
-                toArray(new MGraph[bundle2DocGraphMap.size()]);
-        if (docGraphs.length > 0) {
-            unitedDocumentations = new SimpleGraph(new UnionMGraph(docGraphs), true);
-        } else {
-            unitedDocumentations = new SimpleGraph(new SimpleMGraph(), true);
-        }
-    }
-}

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/UriMutatorIterator.java
----------------------------------------------------------------------
diff --git a/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/UriMutatorIterator.java b/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/UriMutatorIterator.java
deleted file mode 100644
index c728a76..0000000
--- a/platform.documentation/src/main/java/org/apache/clerezza/platform/documentation/UriMutatorIterator.java
+++ /dev/null
@@ -1,176 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-package org.apache.clerezza.platform.documentation;
-
-import java.io.ByteArrayInputStream;
-import java.io.ByteArrayOutputStream;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.UnsupportedEncodingException;
-import java.util.Iterator;
-import javax.xml.parsers.DocumentBuilder;
-import javax.xml.parsers.DocumentBuilderFactory;
-import javax.xml.parsers.ParserConfigurationException;
-import javax.xml.transform.Result;
-import javax.xml.transform.Source;
-import javax.xml.transform.Transformer;
-import javax.xml.transform.TransformerException;
-import javax.xml.transform.TransformerFactory;
-import javax.xml.transform.dom.DOMSource;
-import javax.xml.transform.stream.StreamResult;
-import javax.xml.transform.stream.StreamSource;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-import org.apache.clerezza.rdf.core.NonLiteral;
-import org.apache.clerezza.rdf.core.Resource;
-import org.apache.clerezza.rdf.core.Triple;
-import org.apache.clerezza.rdf.core.TypedLiteral;
-import org.apache.clerezza.rdf.core.UriRef;
-import org.apache.clerezza.rdf.core.impl.TripleImpl;
-import org.apache.clerezza.rdf.core.impl.TypedLiteralImpl;
-import org.w3c.dom.Document;
-import org.xml.sax.SAXException;
-
-/**
- * Replaces the <code>BASE_URI_PLACEHOLDER</code> in the <code>UriRef</code>s 
- * as well as in the XML Literal of the <code>Triple</code>s provided by the
- * specified <code>Iterator</code>s with the specified base URI.
- *
- * @author mir, hasan
- */
-public class UriMutatorIterator implements Iterator<Triple> {
-
-    public static final Logger logger = LoggerFactory.getLogger(UriMutatorIterator.class);
-
-    private DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
-
-    public static final UriRef XML_LITERAL =
-            new UriRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#XMLLiteral");
-
-    public static final String BASE_URI_PLACEHOLDER = "bundle://";
-    private Iterator<Triple> wrapped;
-    private String baseUri;
-    /*
-     * The symbolic name of the bundle from which the documentation origins.
-     */
-    private String originBundleSymbName;
-
-    UriMutatorIterator(Iterator<Triple> wrapped, String baseUri,
-            String bundleSymbolicName) {
-        this.wrapped = wrapped;
-        this.baseUri = baseUri;
-        this.originBundleSymbName = bundleSymbolicName;
-    }
-
-    @Override
-    public boolean hasNext() {
-        return wrapped.hasNext();
-    }
-
-    @Override
-    public Triple next() {
-        Triple triple = wrapped.next();
-
-        NonLiteral subject = triple.getSubject();
-        if (subject instanceof UriRef) {
-            subject = replacePlaceHolder((UriRef) subject);
-        }
-        UriRef predicate = replacePlaceHolder(triple.getPredicate());
-
-        Resource object = triple.getObject();
-        if (object instanceof UriRef) {
-            object = replacePlaceHolder((UriRef) object);
-        } else if (object instanceof TypedLiteral) {
-            TypedLiteral literal = (TypedLiteral) object;
-            if (literal.getDataType().equals(XML_LITERAL)) {
-                object = replacePlaceHolderInUrl(literal);
-            }
-        }
-        return new TripleImpl(subject, predicate, object);
-    }
-
-    @Override
-    public void remove() {
-        throw new UnsupportedOperationException("Not supported.");
-    }
-
-    private UriRef replacePlaceHolder(UriRef uriRef) {
-        String orig = uriRef.getUnicodeString();
-        if (orig.startsWith(BASE_URI_PLACEHOLDER)) {
-            int nextSlash = orig.indexOf("/", BASE_URI_PLACEHOLDER.length());
-            String bundleSymbolicName;
-            if (nextSlash != BASE_URI_PLACEHOLDER.length()) {
-                bundleSymbolicName = orig.subSequence(
-                        BASE_URI_PLACEHOLDER.length(), nextSlash).toString();
-            } else {
-                bundleSymbolicName = originBundleSymbName;
-            }
-            return new UriRef(baseUri + "bundle-doc/" + bundleSymbolicName +
-                    orig.substring(nextSlash));
-        }
-        return uriRef;
-    }
-
-    private TypedLiteral replacePlaceHolderInUrl(TypedLiteral xmlLiteral) {
-        final String tagName = "infoBit";
-        final String openingTag = "<" + tagName + ">";
-        final String closingTag = "</" + tagName + ">";
-        String text = openingTag + xmlLiteral.getLexicalForm() + closingTag;
-
-        InputStream styleSheet = getClass().getResourceAsStream("baseUriTransformation.xsl");
-        TransformerFactory transformerFactory = TransformerFactory.newInstance();
-        StreamSource styleSource = new StreamSource(styleSheet);
-        try {
-            Transformer transformer = transformerFactory.newTransformer(styleSource);
-
-            DocumentBuilder builder = factory.newDocumentBuilder();
-            Document document = builder.parse(new ByteArrayInputStream(text.getBytes("UTF-8")));
-            Source source = new DOMSource(document);
-
-            ByteArrayOutputStream baos = new ByteArrayOutputStream(text.length());
-            Result result = new StreamResult(baos);
-
-            transformer.setParameter("baseUri", baseUri);
-            transformer.setParameter("originBundleSymbolicName", originBundleSymbName);
-            transformer.transform(source, result);
-
-            String resultedText = baos.toString("UTF-8");
-            int startIdx = resultedText.indexOf(openingTag) + openingTag.length();
-            int endIdx = resultedText.lastIndexOf(closingTag);
-            return new TypedLiteralImpl(resultedText.substring(startIdx, endIdx),
-                    XML_LITERAL);
-        } catch (SAXException se) {
-            logger.warn("SAXException {} while transforming xml literal: {}",
-                    se.getMessage(), text);
-        } catch (ParserConfigurationException pce) {
-            logger.warn("ParserConfigurationException {} while transforming xml literal: {}",
-                    pce.getMessage(), text);
-        } catch (TransformerException te) {
-            logger.warn("TransformerException {} while transforming xml literal: {}",
-                    te.getMessage(), text);
-        } catch (UnsupportedEncodingException uee) {
-            logger.warn("UnsupportedEncodingException {} while transforming xml literal: {}",
-                    uee.getMessage(), text);
-        } catch (IOException ioe) {
-            logger.warn("IOException {} while transforming xml literal: {}",
-                    ioe.getMessage(), text);
-        }
-        return xmlLiteral;
-    }
-}

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation/src/main/resources/META-INF/documentation.nt
----------------------------------------------------------------------
diff --git a/platform.documentation/src/main/resources/META-INF/documentation.nt b/platform.documentation/src/main/resources/META-INF/documentation.nt
deleted file mode 100644
index 3f473b5..0000000
--- a/platform.documentation/src/main/resources/META-INF/documentation.nt
+++ /dev/null
@@ -1,47 +0,0 @@
-<bundle:///intro-content-el/0> <http://discobits.org/ontology#infoBit> "Any bundle may provide some user documentation. This documentation is provided by a file named \"documentation.nt\" in the META-INF directory of the bundle-jar. This file can provide multiple documentation resources described using the discobits ontology. The resources have UriRefs starting with \"bundle:///\", this will be replaced with http://&lt;hostname&gt;/bundle-doc/&lt;Bundle-SymbolicName&gt; by the documentation aggregator which provides the graph urn:x-localinstance:/documentation.graph containing the documentation of all installed bundles. To reference a documentation entry from another bundle the bundle-uri can contain a Borundle-SymbolicName after the second slash, e.g. bundle://org.apache.clerezza.platform.content/intro."^^<http://www.w3.org/1999/02/22-rdf-syntax-ns#XMLLiteral> .
-<bundle:///intro-content-el/0> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#XHTMLInfoDiscoBit> .
-<bundle:///intro-content-el/1> <http://discobits.org/ontology#infoBit> "By convention any bundle documentation provides a resource named bundle:///intro introducing the functionality of the bundle."^^<http://www.w3.org/1999/02/22-rdf-syntax-ns#XMLLiteral> .
-<bundle:///intro-content-el/1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#XHTMLInfoDiscoBit> .
-<bundle:///intro-content-el/2-content-el/0> <http://discobits.org/ontology#infoBit> "The recommended way to create and edit the documentation of a bundle is as follows:<ul xmlns=\"http://www.w3.org/1999/xhtml\"><li>Launch clerezza (in the following we assume its running on localhost:8080)</li><li>Install and start the stable n-triples serialization provider (to make the stored files more suitable for version control) by entering on the commmand line: <code>start(\"mvn:org.apache.clerezza/rdf.stable.serializer\")</code></li>\n<li>Install and start the file storage provider(to access local rdf files as named graphs)  by entering on the commmand line: <code>start(\"mvn:org.apache.clerezza/rdf.file.storage\")</code><code></code></li><li>If it doesn't exist yet create an empty file src/main/resources/META-INF/documentation.nt in the project to be documented and </li><li>Open http://localhost:8080/tools/editor/, enter the file-uri of the previously created file as Graph and a bundle-uri (
 such as bundle:///intro) as resource</li><li>edit, save, ship your bundle</li></ul>"^^<http://www.w3.org/1999/02/22-rdf-syntax-ns#XMLLiteral> .
-<bundle:///intro-content-el/2-content-el/0> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#XHTMLInfoDiscoBit> .
-<bundle:///intro-content-el/2-content> <http://discobits.org/ontology#contains> _:dca98a68e3413be1e9bb3f4e56f5cc561 . 
-<bundle:///intro-content-el/2-content> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#OrderedContent> .
-<bundle:///intro-content-el/2-title> <http://discobits.org/ontology#infoBit> "Writing Documentation"^^<http://www.w3.org/1999/02/22-rdf-syntax-ns#XMLLiteral> .
-<bundle:///intro-content-el/2-title> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#XHTMLInfoDiscoBit> .
-<bundle:///intro-content-el/2> <http://discobits.org/ontology#contains> _:005cab2e8f532d75dbe6021467d5f7191 . 
-<bundle:///intro-content-el/2> <http://discobits.org/ontology#contains> _:3682407f1c90d02dcf9dbf4e83d964f51 . 
-<bundle:///intro-content-el/2> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#TitledContent> .
-<bundle:///intro-content> <http://discobits.org/ontology#contains> _:0c33aa960ad81e72549c579dd55074231 . 
-<bundle:///intro-content> <http://discobits.org/ontology#contains> _:16fd3882eda078006a6b02abb28816da1 . 
-<bundle:///intro-content> <http://discobits.org/ontology#contains> _:da78c47eff7d6e6f75a17d01572cb4d81 . 
-<bundle:///intro-content> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#OrderedContent> .
-<bundle:///intro-title> <http://discobits.org/ontology#infoBit> "Platform Documentation Aggregator"^^<http://www.w3.org/1999/02/22-rdf-syntax-ns#XMLLiteral> .
-<bundle:///intro-title> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#XHTMLInfoDiscoBit> .
-<bundle:///intro> <bundle:///nullafter> <bundle://org.apache.clerezza.platform.content/discobits-editor> .
-<bundle:///intro> <http://discobits.org/ontology#contains> _:2d0db51a9a2a40d89460edf6544edbad1 . 
-<bundle:///intro> <http://discobits.org/ontology#contains> _:566a75916142ac411441d067f09a49f71 . 
-<bundle:///intro> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#TitledContent> .
-_:005cab2e8f532d75dbe6021467d5f7191 <http://discobits.org/ontology#holds> <bundle:///intro-content-el/2-content> . 
-_:005cab2e8f532d75dbe6021467d5f7191 <http://discobits.org/ontology#pos> "1" . 
-_:005cab2e8f532d75dbe6021467d5f7191 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 
-_:0c33aa960ad81e72549c579dd55074231 <http://discobits.org/ontology#holds> <bundle:///intro-content-el/2> . 
-_:0c33aa960ad81e72549c579dd55074231 <http://discobits.org/ontology#pos> "2" . 
-_:0c33aa960ad81e72549c579dd55074231 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 
-_:16fd3882eda078006a6b02abb28816da1 <http://discobits.org/ontology#holds> <bundle:///intro-content-el/0> . 
-_:16fd3882eda078006a6b02abb28816da1 <http://discobits.org/ontology#pos> "0" . 
-_:16fd3882eda078006a6b02abb28816da1 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 
-_:2d0db51a9a2a40d89460edf6544edbad1 <http://discobits.org/ontology#holds> <bundle:///intro-title> . 
-_:2d0db51a9a2a40d89460edf6544edbad1 <http://discobits.org/ontology#pos> "0" . 
-_:2d0db51a9a2a40d89460edf6544edbad1 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 
-_:3682407f1c90d02dcf9dbf4e83d964f51 <http://discobits.org/ontology#holds> <bundle:///intro-content-el/2-title> . 
-_:3682407f1c90d02dcf9dbf4e83d964f51 <http://discobits.org/ontology#pos> "0" . 
-_:3682407f1c90d02dcf9dbf4e83d964f51 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 
-_:566a75916142ac411441d067f09a49f71 <http://discobits.org/ontology#holds> <bundle:///intro-content> . 
-_:566a75916142ac411441d067f09a49f71 <http://discobits.org/ontology#pos> "1" . 
-_:566a75916142ac411441d067f09a49f71 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 
-_:da78c47eff7d6e6f75a17d01572cb4d81 <http://discobits.org/ontology#holds> <bundle:///intro-content-el/1> . 
-_:da78c47eff7d6e6f75a17d01572cb4d81 <http://discobits.org/ontology#pos> "1" . 
-_:da78c47eff7d6e6f75a17d01572cb4d81 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 
-_:dca98a68e3413be1e9bb3f4e56f5cc561 <http://discobits.org/ontology#holds> <bundle:///intro-content-el/2-content-el/0> . 
-_:dca98a68e3413be1e9bb3f4e56f5cc561 <http://discobits.org/ontology#pos> "0" . 
-_:dca98a68e3413be1e9bb3f4e56f5cc561 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://discobits.org/ontology#Entry> . 

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation/src/main/resources/org/apache/clerezza/platform/documentation/baseUriTransformation.xsl
----------------------------------------------------------------------
diff --git a/platform.documentation/src/main/resources/org/apache/clerezza/platform/documentation/baseUriTransformation.xsl b/platform.documentation/src/main/resources/org/apache/clerezza/platform/documentation/baseUriTransformation.xsl
deleted file mode 100644
index 9767343..0000000
--- a/platform.documentation/src/main/resources/org/apache/clerezza/platform/documentation/baseUriTransformation.xsl
+++ /dev/null
@@ -1,47 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements.  See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership.  The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License.  You may obtain a copy of the License at
-
-   http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied.  See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform" version="1.0">
-	<xsl:param name="baseUri"/>
-	<xsl:param name="originBundleSymbolicName"/>
-	<xsl:template match="@*|node()">
-		<xsl:copy>
-			<xsl:apply-templates select="@*|node()"/>
-		</xsl:copy>
-	</xsl:template>
-
-	<xsl:template match="@href[parent::a]">
-		<xsl:attribute name="href">
-			<xsl:choose>
-				<xsl:when test="starts-with(.,'bundle:///')">
-					<xsl:value-of select="concat($baseUri,'bundle-doc/',$originBundleSymbolicName,substring-after(.,'bundle://'))"/>
-				</xsl:when>
-				<xsl:when test="starts-with(.,'bundle://')">
-					<xsl:value-of select="concat($baseUri,'bundle-doc/',substring-after(.,'bundle://'))"/>
-				</xsl:when>
-				<xsl:otherwise>
-					<xsl:value-of select="."/>
-				</xsl:otherwise>
-			</xsl:choose>
-		</xsl:attribute>
-	</xsl:template>
-</xsl:stylesheet>

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.documentation/src/test/java/org/apache/clerezza/platform/documentation/UriMutatorIteratorTest.java
----------------------------------------------------------------------
diff --git a/platform.documentation/src/test/java/org/apache/clerezza/platform/documentation/UriMutatorIteratorTest.java b/platform.documentation/src/test/java/org/apache/clerezza/platform/documentation/UriMutatorIteratorTest.java
deleted file mode 100644
index 652dd1c..0000000
--- a/platform.documentation/src/test/java/org/apache/clerezza/platform/documentation/UriMutatorIteratorTest.java
+++ /dev/null
@@ -1,113 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-package org.apache.clerezza.platform.documentation;
-
-import java.util.Iterator;
-import org.junit.Assert;
-import org.junit.Test;
-import org.apache.clerezza.rdf.core.Literal;
-import org.apache.clerezza.rdf.core.MGraph;
-import org.apache.clerezza.rdf.core.Triple;
-import org.apache.clerezza.rdf.core.UriRef;
-import org.apache.clerezza.rdf.core.impl.SimpleMGraph;
-import org.apache.clerezza.rdf.core.impl.TripleImpl;
-import org.apache.clerezza.rdf.core.impl.TypedLiteralImpl;
-
-/**
- *
- * @author mir
- */
-public class UriMutatorIteratorTest {
-
-    private static final String HOST = "http://localhost:8282/";
-
-    private static String ORIGIN_BUNDLE_NAME = "my.symbolic.name";
-
-    private static String REFERENCED_BUNDLE_NAME = "your.symbolic.name";
-
-    @Test
-    public void testMutator() {
-        MGraph mGraph = new SimpleMGraph();
-        UriRef uriRef = new UriRef(UriMutatorIterator.BASE_URI_PLACEHOLDER +
-                REFERENCED_BUNDLE_NAME + "/bla#Test");
-        UriRef expectedUriRef = new UriRef(HOST + 
-                "bundle-doc/"+ REFERENCED_BUNDLE_NAME +"/bla#Test");
-        mGraph.add(new TripleImpl(uriRef, uriRef, uriRef));
-        Iterator<Triple> it = new UriMutatorIterator(mGraph.iterator(), HOST,
-                ORIGIN_BUNDLE_NAME);
-        Triple expectedTriple = new TripleImpl(expectedUriRef, expectedUriRef,
-                expectedUriRef);
-        Assert.assertEquals(expectedTriple, it.next());        
-    }
-
-    @Test
-    public void testMutatorNoSymbolicName() {
-        MGraph mGraph = new SimpleMGraph();
-        UriRef uriRef = new UriRef(UriMutatorIterator.BASE_URI_PLACEHOLDER +
-                "/bla#Test");
-        UriRef expectedUriRef = new UriRef(HOST +
-                "bundle-doc/"+ ORIGIN_BUNDLE_NAME +"/bla#Test");
-        mGraph.add(new TripleImpl(uriRef, uriRef, uriRef));
-        Iterator<Triple> it = new UriMutatorIterator(mGraph.iterator(), HOST,
-                ORIGIN_BUNDLE_NAME);
-        Triple expectedTriple = new TripleImpl(expectedUriRef, expectedUriRef,
-                expectedUriRef);
-        Assert.assertEquals(expectedTriple, it.next());
-    }
-
-    @Test
-    public void baseUriTransformation() {
-        MGraph mGraph = new SimpleMGraph();
-        String xml = "<a href=\"" + UriMutatorIterator.BASE_URI_PLACEHOLDER +
-            REFERENCED_BUNDLE_NAME + "/bla\"/>";
-        Literal literal = new TypedLiteralImpl(xml,
-                    UriMutatorIterator.XML_LITERAL);
-        String expectedXml = "<a href=\"" + HOST + 
-            "bundle-doc/"+ REFERENCED_BUNDLE_NAME +"/bla\"/>";
-        Literal expectedLiteral = new TypedLiteralImpl(expectedXml,
-                    UriMutatorIterator.XML_LITERAL);
-        UriRef uriRef = new UriRef("bla");
-            mGraph.add(new TripleImpl(uriRef, uriRef, literal));
-        Iterator<Triple> it = new UriMutatorIterator(mGraph.iterator(), HOST,
-                ORIGIN_BUNDLE_NAME);
-        Triple expectedTriple = new TripleImpl(uriRef, uriRef,
-                expectedLiteral);
-        Assert.assertEquals(expectedTriple, it.next());
-    }
-
-    @Test
-    public void baseUriTransformationNoSymbolicName() {
-        MGraph mGraph = new SimpleMGraph();
-        String xml = "<a href=\"" + UriMutatorIterator.BASE_URI_PLACEHOLDER +
-            "/bla\"/>";
-        Literal literal = new TypedLiteralImpl(xml,
-                    UriMutatorIterator.XML_LITERAL);
-        String expectedXml = "<a href=\"" + HOST +
-            "bundle-doc/"+ ORIGIN_BUNDLE_NAME +"/bla\"/>";
-        Literal expectedLiteral = new TypedLiteralImpl(expectedXml,
-                    UriMutatorIterator.XML_LITERAL);
-        UriRef uriRef = new UriRef("bla");
-            mGraph.add(new TripleImpl(uriRef, uriRef, literal));
-        Iterator<Triple> it = new UriMutatorIterator(mGraph.iterator(), HOST,
-                ORIGIN_BUNDLE_NAME);
-        Triple expectedTriple = new TripleImpl(uriRef, uriRef,
-                expectedLiteral);
-        Assert.assertEquals(expectedTriple, it.next());
-    }
-}

http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.editor/LICENSE
----------------------------------------------------------------------
diff --git a/platform.editor/LICENSE b/platform.editor/LICENSE
deleted file mode 100644
index 261eeb9..0000000
--- a/platform.editor/LICENSE
+++ /dev/null
@@ -1,201 +0,0 @@
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-
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http://git-wip-us.apache.org/repos/asf/clerezza/blob/af0d99b2/platform.editor/nbactions.xml
----------------------------------------------------------------------
diff --git a/platform.editor/nbactions.xml b/platform.editor/nbactions.xml
deleted file mode 100644
index 9690e1a..0000000
--- a/platform.editor/nbactions.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<actions>
-  <action>
-    <actionName>CUSTOM-deploy to localhost:8080</actionName>
-    <displayName>deploy to localhost:8080</displayName>
-    <goals>
-      <goal>install</goal>
-      <goal>org.apache.sling:maven-sling-plugin:install</goal>
-    </goals>
-  </action>
-</actions>


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