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From "Joel Knighton (JIRA)" <j...@apache.org>
Subject [jira] [Reopened] (CASSANDRA-13038) 33% of compaction time spent in StreamingHistogram.update()
Date Wed, 01 Mar 2017 20:09:45 GMT

     [ https://issues.apache.org/jira/browse/CASSANDRA-13038?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Joel Knighton reopened CASSANDRA-13038:
---------------------------------------

It looks like this ticket introduced a few test failures. {{org.apache.cassandra.io.sstable.metadata.MetadataSerializerTest.testSerialization}}
is consistently failing on 3.11 and trunk after this commit, and {{org.apache.cassandra.db.compaction.CompactionsTest.testSingleSSTableCompactionWithSizeTieredCompaction}}
is failing nearly 100% of the time after this commit on trunk.

In both cases, these tests are failing on the linked CI above and appear to have no historical
failures. I don't see any discussion of these CI failures for the linked branches on the ticket
- are they being resolved elsewhere?



> 33% of compaction time spent in StreamingHistogram.update()
> -----------------------------------------------------------
>
>                 Key: CASSANDRA-13038
>                 URL: https://issues.apache.org/jira/browse/CASSANDRA-13038
>             Project: Cassandra
>          Issue Type: Bug
>          Components: Compaction
>            Reporter: Corentin Chary
>            Assignee: Jeff Jirsa
>             Fix For: 3.0.12, 3.11.0
>
>         Attachments: compaction-speedup.patch, compaction-streaminghistrogram.png, profiler-snapshot.nps
>
>
> With the following table, that contains a *lot* of cells: 
> {code}
> CREATE TABLE biggraphite.datapoints_11520p_60s (
>     metric uuid,
>     time_start_ms bigint,
>     offset smallint,
>     count int,
>     value double,
>     PRIMARY KEY ((metric, time_start_ms), offset)
> ) WITH CLUSTERING ORDER BY (offset DESC);
> AND compaction = {'class': 'org.apache.cassandra.db.compaction.TimeWindowCompactionStrategy',
'compaction_window_size': '6', 'compaction_window_unit': 'HOURS', 'max_threshold': '32', 'min_threshold':
'6'}
> Keyspace : biggraphite
>         Read Count: 1822
>         Read Latency: 1.8870054884742042 ms.
>         Write Count: 2212271647
>         Write Latency: 0.027705127678653473 ms.
>         Pending Flushes: 0
>                 Table: datapoints_11520p_60s
>                 SSTable count: 47
>                 Space used (live): 300417555945
>                 Space used (total): 303147395017
>                 Space used by snapshots (total): 0
>                 Off heap memory used (total): 207453042
>                 SSTable Compression Ratio: 0.4955200053039823
>                 Number of keys (estimate): 16343723
>                 Memtable cell count: 220576
>                 Memtable data size: 17115128
>                 Memtable off heap memory used: 0
>                 Memtable switch count: 2872
>                 Local read count: 0
>                 Local read latency: NaN ms
>                 Local write count: 1103167888
>                 Local write latency: 0.025 ms
>                 Pending flushes: 0
>                 Percent repaired: 0.0
>                 Bloom filter false positives: 0
>                 Bloom filter false ratio: 0.00000
>                 Bloom filter space used: 105118296
>                 Bloom filter off heap memory used: 106547192
>                 Index summary off heap memory used: 27730962
>                 Compression metadata off heap memory used: 73174888
>                 Compacted partition minimum bytes: 61
>                 Compacted partition maximum bytes: 51012
>                 Compacted partition mean bytes: 7899
>                 Average live cells per slice (last five minutes): NaN
>                 Maximum live cells per slice (last five minutes): 0
>                 Average tombstones per slice (last five minutes): NaN
>                 Maximum tombstones per slice (last five minutes): 0
>                 Dropped Mutations: 0
> {code}
> It looks like a good chunk of the compaction time is lost in StreamingHistogram.update()
(which is used to store the estimated tombstone drop times).
> This could be caused by a huge number of different deletion times which would makes the
bin huge but it this histogram should be capped to 100 keys. It's more likely caused by the
huge number of cells.
> A simple solutions could be to only take into accounts part of the cells, the fact the
this table has a TWCS also gives us an additional hint that sampling deletion times would
be fine.



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