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From "Marc Drolet (JIRA)" <j...@apache.org>
Subject [jira] [Comment Edited] (CASSANDRA-8351) Running COPY FROM in cqlsh aborts with errors or segmentation fault
Date Mon, 08 Dec 2014 20:07:12 GMT

    [ https://issues.apache.org/jira/browse/CASSANDRA-8351?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14238378#comment-14238378
] 

Marc Drolet edited comment on CASSANDRA-8351 at 12/8/14 8:07 PM:
-----------------------------------------------------------------

I'm getting the same issue.  as well as other errors running the same cqlsh COPY command.

errors I'm getting:
1- err:  Segmentation fault (core dumped)
2- err: <stdin>:1:new-line character seen in unquoted field - do you need to open the
file in universal-newline mode?
3- err: <stdin>:1:line contains NULL byte <stdin>:1:Aborting import at record
#43. Previously-inserted values still present.

for number 2 and 3, I've edit the cqlsh script to change the copy command code that open the
csv file:   from linesource = open(fname, 'rb')   to   linesource = open(fname, 'rU')
it's at line number 1378

for number 1, err:  Segmentation fault (core dumped), I don't know what's going wrong. I retry
a couple of time the same command and it finally work.
to reproduce the problem, just trigger an cqlsh command to execute a COPY query in loop and
you will see the error. (it's random, sometime it works, sometime you get the error for the
same file). 

versions:
Ubuntu 14.04.1 LTS, Trusty Tahr
Python 2.7.6
[cqlsh 5.0.1 | Cassandra 2.1.2 | CQL spec 3.2.0 | Native protocol v3]


was (Author: droletmarc):
I'm getting the same issue.  as well as other errors running the same cqlsh COPY command.

errors I'm getting:
1- err:  Segmentation fault (core dumped)
2- err: <stdin>:1:new-line character seen in unquoted field - do you need to open the
file in universal-newline mode?
3- err: <stdin>:1:line contains NULL byte <stdin>:1:Aborting import at record
#43. Previously-inserted values still present.

for number 2 and 3, I've edit the cqlsh script to change the copy command code that open the
csv file:   from linesource = open(fname, 'rb')   to   linesource = open(fname, 'rU')
it's at line number 1378

for number 1, err:  Segmentation fault (core dumped), I don't know what's going wrong. I retry
a couple of time the same command and it finally work.
to reproduce the problem, just trigger an cqlsh command to execute a COPY query in loop and
you will see the error. (it's random, sometime it works, sometime you get the error for the
same file). 

versions:
Ubuntu 14.04.1 LTS, Trusty Tahr
[cqlsh 5.0.1 | Cassandra 2.1.2 | CQL spec 3.2.0 | Native protocol v3]

> Running COPY FROM in cqlsh aborts with errors or segmentation fault
> -------------------------------------------------------------------
>
>                 Key: CASSANDRA-8351
>                 URL: https://issues.apache.org/jira/browse/CASSANDRA-8351
>             Project: Cassandra
>          Issue Type: Bug
>            Reporter: Joseph Chu
>            Priority: Minor
>              Labels: cqlsh
>             Fix For: 2.1.3
>
>         Attachments: stress.cql, stress.csv
>
>
> Running Cassandra 2.1.2 binary tarball on a single instance.
> Put together a script to try to reproduce this using data generated by cassandra-stress.
> Reproduction steps: Download files and run cqlsh -f stress.cql
> This may need to run a couple of times before errors are encountered. I've seen this
work best when running after a fresh install.
> Errors seen:
> 1.    Segmentation fault (core dumped)
> 2.    stress.cql:24:line contains NULL byte
>        stress.cql:24:Aborting import at record #0. Previously-inserted values still present.
>        71 rows imported in 0.100 seconds.
> 3.   *** glibc detected *** python: corrupted double-linked list: 0x0000000001121ad0
***
> ======= Backtrace: =========
> /lib/x86_64-linux-gnu/libc.so.6(+0x7eb96)[0x7f80fe0cdb96]
> /lib/x86_64-linux-gnu/libc.so.6(+0x7fead)[0x7f80fe0ceead]
> python[0x42615d]
> python[0x501dc8]
> python[0x4ff715]
> python[0x425d02]
> python(PyEval_EvalCodeEx+0x1c4)[0x575db4]
> python[0x577be2]
> python(PyObject_Call+0x36)[0x4d91b6]
> python(PyEval_EvalFrameEx+0x2035)[0x54d8a5]
> python(PyEval_EvalCodeEx+0x1a2)[0x575d92]
> python(PyEval_EvalFrameEx+0x7b8)[0x54c028]
> python(PyEval_EvalCodeEx+0x1a2)[0x575d92]
> python(PyEval_EvalFrameEx+0x7b8)[0x54c028]
> python(PyEval_EvalFrameEx+0xa02)[0x54c272]
> python(PyEval_EvalFrameEx+0xa02)[0x54c272]
> python(PyEval_EvalFrameEx+0xa02)[0x54c272]
> python(PyEval_EvalCodeEx+0x1a2)[0x575d92]
> python(PyEval_EvalFrameEx+0x7b8)[0x54c028]
> python(PyEval_EvalCodeEx+0x1a2)[0x575d92]
> python(PyEval_EvalFrameEx+0x7b8)[0x54c028]
> python(PyEval_EvalCodeEx+0x1a2)[0x575d92]
> python[0x577be2]
> python(PyObject_Call+0x36)[0x4d91b6]
> python(PyEval_EvalFrameEx+0x2035)[0x54d8a5]
> python(PyEval_EvalFrameEx+0xa02)[0x54c272]
> python(PyEval_EvalFrameEx+0xa02)[0x54c272]
> python(PyEval_EvalCodeEx+0x1a2)[0x575d92]
> python[0x577ab0]
> python(PyObject_Call+0x36)[0x4d91b6]
> python[0x4c91fa]
> python(PyObject_Call+0x36)[0x4d91b6]
> python(PyEval_CallObjectWithKeywords+0x36)[0x4d97c6]
> python[0x4f7f58]
> /lib/x86_64-linux-gnu/libpthread.so.0(+0x7e9a)[0x7f80ff369e9a]
> /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d)[0x7f80fe1433fd]
> ======= Memory map: ========
> 00400000-00672000 r-xp 00000000 08:01 1447344                            /usr/bin/python2.7
> 00871000-00872000 r--p 00271000 08:01 1447344                            /usr/bin/python2.7
> 00872000-008db000 rw-p 00272000 08:01 1447344                            /usr/bin/python2.7
> 008db000-008ed000 rw-p 00000000 00:00 0 
> 0090e000-01260000 rw-p 00000000 00:00 0                                  [heap]
> 7f80ec000000-7f80ec0aa000 rw-p 00000000 00:00 0 
> 7f80ec0aa000-7f80f0000000 ---p 00000000 00:00 0 
> 7f80f0000000-7f80f0021000 rw-p 00000000 00:00 0 
> 7f80f0021000-7f80f4000000 ---p 00000000 00:00 0 
> 7f80f4000000-7f80f4021000 rw-p 00000000 00:00 0 
> 7f80f4021000-7f80f8000000 ---p 00000000 00:00 0 
> 7f80fa713000-7f80fa714000 ---p 00000000 00:00 0 
> 7f80fa714000-7f80faf14000 rw-p 00000000 00:00 0                          [stack:7493]
> 7f80faf14000-7f80faf15000 ---p 00000000 00:00 0 
> 7f80faf15000-7f80fb715000 rw-p 00000000 00:00 0                          [stack:7492]
> 7f80fb715000-7f80fb716000 ---p 00000000 00:00 0 
> 7f80fb716000-7f80fbf16000 rw-p 00000000 00:00 0                          [stack:7491]
> 7f80fbf16000-7f80fbf21000 r-xp 00000000 08:01 1456254                    /usr/lib/python2.7/lib-dynload/_json.so
> 7f80fbf21000-7f80fc120000 ---p 0000b000 08:01 1456254                    /usr/lib/python2.7/lib-dynload/_json.so
> 7f80fc120000-7f80fc121000 r--p 0000a000 08:01 1456254                    /usr/lib/python2.7/lib-dynload/_json.so
> 7f80fc121000-7f80fc122000 rw-p 0000b000 08:01 1456254                    /usr/lib/python2.7/lib-dynload/_json.so
> 7f80fc122000-7f80fc133000 r-xp 00000000 08:01 1585974                    /usr/local/lib/python2.7/dist-packages/blist/_blist.so
> 7f80fc133000-7f80fc332000 ---p 00011000 08:01 1585974                    /usr/local/lib/python2.7/dist-packages/blist/_blist.so
> 7f80fc332000-7f80fc333000 r--p 00010000 08:01 1585974                    /usr/local/lib/python2.7/dist-packages/blist/_blist.so
> 7f80fc333000-7f80fc335000 rw-p 00011000 08:01 1585974                    /usr/local/lib/python2.7/dist-packages/blist/_blist.so
> 7f80fc335000-7f80fc349000 r-xp 00000000 08:01 1456262                    /usr/lib/python2.7/lib-dynload/datetime.so
> 7f80fc349000-7f80fc548000 ---p 00014000 08:01 1456262                    /usr/lib/python2.7/lib-dynload/datetime.so
> 7f80fc548000-7f80fc549000 r--p 00013000 08:01 1456262                    /usr/lib/python2.7/lib-dynload/datetime.so
> 7f80fc549000-7f80fc54d000 rw-p 00014000 08:01 1456262                    /usr/lib/python2.7/lib-dynload/datetime.so
> 7f80fc54d000-7f80fc56c000 r-xp 00000000 08:01 1456251                    /usr/lib/python2.7/lib-dynload/_io.so
> 7f80fc56c000-7f80fc76b000 ---p 0001f000 08:01 1456251                    /usr/lib/python2.7/lib-dynload/_io.so
> 7f80fc76b000-7f80fc76c000 r--p 0001e000 08:01 1456251                    /usr/lib/python2.7/lib-dynload/_io.so
> 7f80fc76c000-7f80fc775000 rw-p 0001f000 08:01 1456251                    /usr/lib/python2.7/lib-dynload/_io.so
> 7f80fc775000-7f80fc77b000 r-xp 00000000 08:01 1456263                    /usr/lib/python2.7/lib-dynload/_multiprocessing.so
> 7f80fc77b000-7f80fc97a000 ---p 00006000 08:01 1456263                    /usr/lib/python2.7/lib-dynload/_multiprocessing.so
> 7f80fc97a000-7f80fc97b000 r--p 00005000 08:01 1456263                    /usr/lib/python2.7/lib-dynload/_multiprocessing.so
> 7f80fc97b000-7f80fc97c000 rw-p 00006000 08:01 1456263                    /usr/lib/python2.7/lib-dynload/_multiprocessing.so
> 7f80fc97c000-7f80fc99e000 r-xp 00000000 08:01 1704004                    /lib/x86_64-linux-gnu/libtinfo.so.5.9
> 7f80fc99e000-7f80fcb9e000 ---p 00022000 08:01 1704004                    /lib/x86_64-linux-gnu/libtinfo.so.5.9
> 7f80fcb9e000-7f80fcba2000 r--p 00022000 08:01 1704004                    /lib/x86_64-linux-gnu/libtinfo.so.5.9
> 7f80fcba2000-7f80fcba3000 rw-p 00026000 08:01 1704004                    /lib/x86_64-linux-gnu/libtinfo.so.5.9
> 7f80fcba3000-7f80fcbdc000 r-xp 00000000 08:01 1704181                    /lib/x86_64-linux-gnu/libreadline.so.6.2
> 7f80fcbdc000-7f80fcddc000 ---p 00039000 08:01 1704181                    /lib/x86_64-linux-gnu/libreadline.so.6.2
> 7f80fcddc000-7f80fcdde000 r--p 00039000 08:01 1704181                    /lib/x86_64-linux-gnu/libreadline.so.6.2
> 7f80fcdde000-7f80fcde4000 rw-p 0003b000 08:01 1704181                    /lib/x86_64-linux-gnu/libreadline.so.6.2
> 7f80fcde4000-7f80fcde5000 rw-p 00000000 00:00 0 
> 7f80fcde5000-7f80fcdea000 r-xp 00000000 08:01 1456232                    /usr/lib/python2.7/lib-dynload/readline.so
> 7f80fcdea000-7f80fcfe9000 ---p 00005000 08:01 1456232                    /usr/lib/python2.7/lib-dynload/readline.so
> 7f80fcfe9000-7f80fcfea000 r--p 00004000 08:01 1456232                    /usr/lib/python2.7/lib-dynload/readline.so
> 7f80fcfea000-7f80fcfec000 rw-p 00005000 08:01 1456232                    /usr/lib/python2.7/lib-dynload/readline.so
> 7f80fcfec000-7f80fcff0000 r-xp 00000000 08:01 1456240                    /usr/lib/python2.7/lib-dynload/termios.so
> 7f80fcff0000-7f80fd1ef000 ---p 00004000 08:01 1456240                    /usr/lib/python2.7/lib-dynload/termios.so
> 7f80fd1ef000-7f80fd1f0000 r--p 00003000 08:01 1456240                    /usr/lib/python2.7/lib-dynload/termios.so
> 7f80fd1f0000-7f80fd1f2000 rw-p 00004000 08:01 1456240                    /usr/lib/python2.7/lib-dynload/termios.so
> 7f80fd1f2000-7f80fd1f8000 r-xp 00000000 08:01 1456257                    /usr/lib/python2.7/lib-dynload/_csv.so
> 7f80fd1f8000-7f80fd3f7000 ---p 00006000 08:01 1456257                    /usr/lib/python2.7/lib-dynload/_csv.so
> 7f80fd3f7000-7f80fd3f8000 r--p 00005000 08:01 1456257                    /usr/lib/python2.7/lib-dynload/_csv.so
> 7f80fd3f8000-7f80fd3fa000 rw-p 00006000 08:01 1456257                    /usr/lib/python2.7/lib-dynload/_csv.so
> 7f80fd3fa000-7f80fd3fd000 r-xp 00000000 08:01 1456238                    /usr/lib/python2.7/lib-dynload/_heapq.so
> 7f80fd3fd000-7f80fd5fc000 ---p 00003000 08:01 1456238                    /usr/lib/python2.7/lib-dynload/_heapq.so
> 7f80fd5fc000-7f80fd5fd000 r--p 00002000 08:01 1456238                    /usr/lib/python2.7/lib-dynload/_heapq.so
> 7f80fd5fd000-7f80fd5ff000 rw-p 00003000 08:01 1456238                    /usr/lib/python2.7/lib-dynload/_heapq.so
> 7f80fd5ff000-7f80fd6c0000 rw-p 00000000 00:00 0 
> 7f80fd6c0000-7f80fd6e1000 r-xp 00000000 08:01 1456260                    /usr/lib/python2.7/lib-dynload/_ctypes.so
> 7f80fd6e1000-7f80fd8e0000 ---p 00021000 08:01 1456260                    /usr/lib/python2.7/lib-dynload/_ctypes.so
> 7f80fd8e0000-7f80fd8e1000 r--p 00020000 08:01 1456260                    /usr/lib/python2.7/lib-dynload/_ctypes.so
> 7f80fd8e1000-7f80fd8e5000 rw-p 00021000 08:01 1456260                    /usr/lib/python2.7/lib-dynload/_ctypes.so
> 7f80fd8e5000-7f80fd968000 rw-p 00000000 00:00 0 
> 7f80fd96b000-7f80fd96f000 r-xp 00000000 08:01 1704045                    /lib/x86_64-linux-gnu/libuuid.so.1.3.0
> 7f80fd96f000-7f80fdb6e000 ---p 00004000 08:01 1704045                    /lib/x86_64-linux-gnu/libuuid.so.1.3.0
> 7f80fdb6e000-7f80fdb6f000 r--p 00003000 08:01 1704045                    /lib/x86_64-linux-gnu/libuuid.so.1.3.0
> 7f80fdb6f000-7f80fdb70000 rw-p 00004000 08:01 1704045                    /lib/x86_64-linux-gnu/libuuid.so.1.3.0
> 7f80fdb70000-7f80fde39000 r--p 00000000 08:01 1447853                    /usr/lib/locale/locale-archive
> 7f80fde39000-7f80fde4e000 r-xp 00000000 08:01 1703980                    /lib/x86_64-linux-gnu/libgcc_s.so.1
> 7f80fde4e000-7f80fe04d000 ---p 00015000 08:01 1703980                    /lib/x86_64-linux-gnu/libgcc_s.so.1
> 7f80fe04d000-7f80fe04e000 r--p 00014000 08:01 1703980                    /lib/x86_64-linux-gnu/libgcc_s.so.1
> 7f80fe04e000-7f80fe04f000 rw-p 00015000 08:01 1703980                    /lib/x86_64-linux-gnu/libgcc_s.so.1
> 7f80fe04f000-7f80fe204000 r-xp 00000000 08:01 1703953                    /lib/x86_64-linux-gnu/libc-2.15.so
> 7f80fe204000-7f80fe404000 ---p 001b5000 08:01 1703953                    /lib/x86_64-linux-gnu/libc-2.15.so
> 7f80fe404000-7f80fe408000 r--p 001b5000 08:01 1703953                    /lib/x86_64-linux-gnu/libc-2.15.so
> 7f80fe408000-7f80fe40a000 rw-p 001b9000 08:01 1703953                    /lib/x86_64-linux-gnu/libc-2.15.so
> 7f80fe40a000-7f80fe40f000 rw-p 00000000 00:00 0 
> 7f80fe40f000-7f80fe50a000 r-xp 00000000 08:01 1703968                    /lib/x86_64-linux-gnu/libm-2.15.so
> 7f80fe50a000-7f80fe709000 ---p 000fb000 08:01 1703968                    /lib/x86_64-linux-gnu/libm-2.15.so
> 7f80fe709000-7f80fe70a000 r--p 000fa000 08:01 1703968                    /lib/x86_64-linux-gnu/libm-2.15.so
> 7f80fe70a000-7f80fe70b000 rw-p 000fb000 08:01 1703968                    /lib/x86_64-linux-gnu/libm-2.15.so
> 7f80fe70b000-7f80fe721000 r-xp 00000000 08:01 1704165                    /lib/x86_64-linux-gnu/libz.so.1.2.3.4
> 7f80fe721000-7f80fe920000 ---p 00016000 08:01 1704165                    /lib/x86_64-linux-gnu/libz.so.1.2.3.4
> 7f80fe920000-7f80fe921000 r--p 00015000 08:01 1704165                    /lib/x86_64-linux-gnu/libz.so.1.2.3.4
> 7f80fe921000-7f80fe922000 rw-p 00016000 08:01 1704165                    /lib/x86_64-linux-gnu/libz.so.1.2.3.4
> 7f80fe922000-7f80fead3000 r-xp 00000000 08:01 1710096                    /lib/x86_64-linux-gnu/libcrypto.so.1.0.0
> 7f80fead3000-7f80fecd3000 ---p 001b1000 08:01 1710096                    /lib/x86_64-linux-gnu/libcrypto.so.1.0.0
> 7f80fecd3000-7f80fecee000 r--p 001b1000 08:01 1710096                    /lib/x86_64-linux-gnu/libcrypto.so.1.0.0
> 7f80fecee000-7f80fecf9000 rw-p 001cc000 08:01 1710096                    /lib/x86_64-linux-gnu/libcrypto.so.1.0.0
> 7f80fecf9000-7f80fecfd000 rw-p 00000000 00:00 0 
> 7f80fecfd000-7f80fed51000 r-xp 00000000 08:01 1710095                    /lib/x86_64-linux-gnu/libssl.so.1.0.0
> 7f80fed51000-7f80fef51000 ---p 00054000 08:01 1710095                    /lib/x86_64-linux-gnu/libssl.so.1.0.0
> 7f80fef51000-7f80fef54000 r--p 00054000 08:01 1710095                    /lib/x86_64-linux-gnu/libssl.so.1.0.0
> 7f80fef54000-7f80fef5a000 rw-p 00057000 08:01 1710095                    /lib/x86_64-linux-gnu/libssl.so.1.0.0
> 7f80fef5a000-7f80fef5b000 rw-p 00000000 00:00 0 
> 7f80fef5b000-7f80fef5d000 r-xp 00000000 08:01 1703952                    /lib/x86_64-linux-gnu/libutil-2.15.so
> 7f80fef5d000-7f80ff15c000 ---p 00002000 08:01 1703952                    /lib/x86_64-linux-gnu/libutil-2.15.so
> 7f80ff15c000-7f80ff15d000 r--p 00001000 08:01 1703952                    /lib/x86_64-linux-gnu/libutil-2.15.so
> 7f80ff15d000-7f80ff15e000 rw-p 00002000 08:01 1703952                    /lib/x86_64-linux-gnu/libutil-2.15.so
> 7f80ff15e000-7f80ff160000 r-xp 00000000 08:01 1703972                    /lib/x86_64-linux-gnu/libdl-2.15.so
> 7f80ff160000-7f80ff360000 ---p 00002000 08:01 1703972                    /lib/x86_64-linux-gnu/libdl-2.15.so
> 7f80ff360000-7f80ff361000 r--p 00002000 08:01 1703972                    /lib/x86_64-linux-gnu/libdl-2.15.so
> 7f80ff361000-7f80ff362000 rw-p 00003000 08:01 1703972                    /lib/x86_64-linux-gnu/libdl-2.15.so
> 7f80ff362000-7f80ff37a000 r-xp 00000000 08:01 1703966                    /lib/x86_64-linux-gnu/libpthread-2.15.so
> 7f80ff37a000-7f80ff579000 ---p 00018000 08:01 1703966                    /lib/x86_64-linux-gnu/libpthread-2.15.so
> 7f80ff579000-7f80ff57a000 r--p 00017000 08:01 1703966                    /lib/x86_64-linux-gnu/libpthread-2.15.so
> 7f80ff57a000-7f80ff57b000 rw-p 00018000 08:01 1703966                    /lib/x86_64-linux-gnu/libpthread-2.15.so
> 7f80ff57b000-7f80ff57f000 rw-p 00000000 00:00 0 
> 7f80ff57f000-7f80ff5a1000 r-xp 00000000 08:01 1703969                    /lib/x86_64-linux-gnu/ld-2.15.so
> 7f80ff655000-7f80ff6d7000 rw-p 00000000 00:00 0 
> 7f80ff708000-7f80ff790000 rw-p 00000000 00:00 0 
> 7f80ff79a000-7f80ff79e000 rw-p 00000000 00:00 0 
> 7f80ff79e000-7f80ff79f000 rwxp 00000000 00:00 0 
> 7f80ff79f000-7f80ff7a1000 rw-p 00000000 00:00 0 
> 7f80ff7a1000-7f80ff7a2000 r--p 00022000 08:01 1703969                    /lib/x86_64-linux-gnu/ld-2.15.so
> 7f80ff7a2000-7f80ff7a4000 rw-p 00023000 08:01 1703969                    /lib/x86_64-linux-gnu/ld-2.15.so
> 7fff01618000-7fff01639000 rw-p 00000000 00:00 0                          [stack]
> 7fff0174d000-7fff0174f000 r-xp 00000000 00:00 0                          [vdso]
> ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]



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