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Date: Wed, 6 Dec 2017 00:20:29 +0000 (UTC)
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Subject: Build failed in Jenkins: beam_PerformanceTests_Python #643
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archived-at: Wed, 06 Dec 2017 00:20:42 -0000

See <https://builds.apache.org/job/beam_PerformanceTests_Python/643/display/redirect?page=changes>

Changes:

[msaul] Added loose failure mode to allow individual VCF record reads to fail

[kirpichov] Fixes a bug in Sample.Any

------------------------------------------
Started by timer
[EnvInject] - Loading node environment variables.
Building remotely on beam7 (beam) in workspace <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/>
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/apache/beam.git # timeout=10
Fetching upstream changes from https://github.com/apache/beam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/apache/beam.git +refs/heads/*:refs/remotes/origin/* +refs/pull/${ghprbPullId}/*:refs/remotes/origin/pr/${ghprbPullId}/*
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision fd8ad273061717d8d0140c7e905f9478ed0a9d6c (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f fd8ad273061717d8d0140c7e905f9478ed0a9d6c
Commit message: "This closes #4216: Fixes a bug in Sample.Any"
 > git rev-list 6474616ff1a2078f35cce60c9e6cd6991b95b3dd # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
[EnvInject] - Executing scripts and injecting environment variables after the SCM step.
[EnvInject] - Injecting as environment variables the properties content 
SPARK_LOCAL_IP=127.0.0.1

[EnvInject] - Variables injected successfully.
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins7047280778716289921.sh
+ rm -rf PerfKitBenchmarker
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins2563229367503599425.sh
+ git clone https://github.com/GoogleCloudPlatform/PerfKitBenchmarker.git
Cloning into 'PerfKitBenchmarker'...
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins2112765337655753221.sh
+ pip install --user -r PerfKitBenchmarker/requirements.txt
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[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins1965180276793797801.sh
+ pip install --user -e 'src/sdks/python/[gcp,test]'
Obtaining file://<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src/sdks/python>
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Installing collected packages: apache-beam
  Found existing installation: apache-beam 2.3.0.dev0
    Uninstalling apache-beam-2.3.0.dev0:
      Successfully uninstalled apache-beam-2.3.0.dev0
  Running setup.py develop for apache-beam
Successfully installed apache-beam
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins2644722912410108088.sh
+ python PerfKitBenchmarker/pkb.py --project=apache-beam-testing --dpb_log_level=INFO --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn --bigquery_table=beam_performance.pkb_results --official=true --beam_sdk=python --benchmarks=beam_integration_benchmark --beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output
2017-12-06 00:00:26,096 6436202c MainThread INFO     Verbose logging to: /tmp/perfkitbenchmarker/runs/6436202c/pkb.log
2017-12-06 00:00:26,097 6436202c MainThread INFO     PerfKitBenchmarker version: v1.12.0-203-g78f9eeb
2017-12-06 00:00:26,097 6436202c MainThread INFO     Flag values:
--beam_sdk=python
--beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output
--maven_binary=/home/jenkins/tools/maven/latest/bin/mvn
--project=apache-beam-testing
--bigquery_table=beam_performance.pkb_results
--official
--dpb_log_level=INFO
--benchmarks=beam_integration_benchmark
2017-12-06 00:00:26,380 6436202c MainThread WARNING  The key "flags" was not in the default config, but was in user overrides. This may indicate a typo.
2017-12-06 00:00:26,380 6436202c MainThread INFO     Initializing the edw service decoder
2017-12-06 00:00:26,634 6436202c MainThread beam_integration_benchmark(1/1) INFO     Provisioning resources for benchmark beam_integration_benchmark
2017-12-06 00:00:26,636 6436202c MainThread beam_integration_benchmark(1/1) INFO     Preparing benchmark beam_integration_benchmark
2017-12-06 00:00:26,637 6436202c MainThread beam_integration_benchmark(1/1) INFO     Running: git clone https://github.com/apache/beam.git
2017-12-06 00:00:36,450 6436202c MainThread beam_integration_benchmark(1/1) INFO     Running: /home/jenkins/tools/maven/latest/bin/mvn clean install -DskipTests -Dcheckstyle.skip=true -Pdataflow-runner
2017-12-06 00:10:27,447 6436202c MainThread beam_integration_benchmark(1/1) INFO     Running benchmark beam_integration_benchmark
2017-12-06 00:10:27,562 6436202c MainThread beam_integration_benchmark(1/1) INFO     Running: python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner --sdk_location=/tmp/perfkitbenchmarker/runs/6436202c/beam/sdks/python/target/apache-beam-2.3.0.dev0.tar.gz
2017-12-06 00:20:27,567 6436202c Thread-4 ERROR    IssueCommand timed out after 600 seconds. Killing command "python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner --sdk_location=/tmp/perfkitbenchmarker/runs/6436202c/beam/sdks/python/target/apache-beam-2.3.0.dev0.tar.gz".
2017-12-06 00:20:27,574 6436202c MainThread beam_integration_benchmark(1/1) INFO     Ran python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner --sdk_location=/tmp/perfkitbenchmarker/runs/6436202c/beam/sdks/python/target/apache-beam-2.3.0.dev0.tar.gz. Got return code (-9).
STDOUT: running nosetests
running egg_info
writing requirements to apache_beam.egg-info/requires.txt
writing apache_beam.egg-info/PKG-INFO
writing top-level names to apache_beam.egg-info/top_level.txt
writing dependency_links to apache_beam.egg-info/dependency_links.txt
writing entry points to apache_beam.egg-info/entry_points.txt
reading manifest file 'apache_beam.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'apache_beam.egg-info/SOURCES.txt'

STDERR: /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'python_requires'
  warnings.warn(msg)
test_wordcount_fnapi_it (apache_beam.examples.wordcount_it_test.WordCountIT) ... /tmp/perfkitbenchmarker/runs/6436202c/beam/sdks/python/apache_beam/io/gcp/gcsio.py:122: DeprecationWarning: object() takes no parameters
  super(GcsIO, cls).__new__(cls, storage_client))
/tmp/perfkitbenchmarker/runs/6436202c/beam/sdks/python/apache_beam/coders/typecoders.py:134: UserWarning: Using fallback coder for typehint: Any.
  warnings.warn('Using fallback coder for typehint: %r.' % typehint)
ok
test_wordcount_it (apache_beam.examples.wordcount_it_test.WordCountIT) ... /tmp/perfkitbenchmarker/runs/6436202c/beam/sdks/python/apache_beam/coders/typecoders.py:134: UserWarning: Using fallback coder for typehint: <type 'NoneType'>.
  warnings.warn('Using fallback coder for typehint: %r.' % typehint)

2017-12-06 00:20:27,575 6436202c MainThread beam_integration_benchmark(1/1) ERROR    Error during benchmark beam_integration_benchmark
Traceback (most recent call last):
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 584, in RunBenchmark
    DoRunPhase(spec, collector, detailed_timer)
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 495, in DoRunPhase
    samples = spec.BenchmarkRun(spec)
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/linux_benchmarks/beam_integration_benchmark.py",> line 159, in Run
    job_type=job_type)
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/providers/gcp/gcp_dpb_dataflow.py",> line 90, in SubmitJob
    assert retcode == 0, "Integration Test Failed."
AssertionError: Integration Test Failed.
2017-12-06 00:20:27,576 6436202c MainThread beam_integration_benchmark(1/1) INFO     Cleaning up benchmark beam_integration_benchmark
2017-12-06 00:20:27,578 6436202c MainThread beam_integration_benchmark(1/1) ERROR    Benchmark 1/1 beam_integration_benchmark (UID: beam_integration_benchmark0) failed. Execution will continue.
2017-12-06 00:20:27,588 6436202c MainThread INFO     Benchmark run statuses:
---------------------------------------------------------------
Name                        UID                          Status
---------------------------------------------------------------
beam_integration_benchmark  beam_integration_benchmark0  FAILED
---------------------------------------------------------------
Success rate: 0.00% (0/1)
2017-12-06 00:20:27,589 6436202c MainThread INFO     Complete logs can be found at: /tmp/perfkitbenchmarker/runs/6436202c/pkb.log
2017-12-06 00:20:27,589 6436202c MainThread INFO     Completion statuses can be found at: /tmp/perfkitbenchmarker/runs/6436202c/completion_statuses.json
Build step 'Execute shell' marked build as failure
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