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From "ASF GitHub Bot (JIRA)" <>
Subject [jira] [Commented] (BEAM-2774) Add I/O source for VCF files (python)
Date Wed, 06 Dec 2017 20:05:00 GMT


ASF GitHub Bot commented on BEAM-2774:

arostamianfar opened a new pull request #4221: [BEAM-2774] Remove a test case from VcfIO.
   Missing fields in samples is not consistently enforced by PyVCF.
   Particularly, the cparse.pyx implementation ignores additional arguments
   while the python implementation in throws an error.

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> Add I/O source for VCF files (python)
> -------------------------------------
>                 Key: BEAM-2774
>                 URL:
>             Project: Beam
>          Issue Type: New Feature
>          Components: sdk-py-core
>            Reporter: Asha Rostamianfar
>            Assignee: Miles Saul
>   Original Estimate: 336h
>  Remaining Estimate: 336h
> A new I/O source for reading (and eventually writing) VCF files [1] for Python. The design
doc is available at
> [1]

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