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From "ASF GitHub Bot (JIRA)" <>
Subject [jira] [Commented] (BEAM-2774) Add I/O source for VCF files (python)
Date Wed, 29 Nov 2017 22:35:00 GMT


ASF GitHub Bot commented on BEAM-2774:

chamikaramj commented on a change in pull request #4157: [BEAM-2774] Added loose failure mode
to allow individual VCF record reads to fail

 File path: sdks/python/apache_beam/io/
 @@ -274,7 +285,9 @@ def __init__(self,
         self._vcf_reader = vcf.Reader(fsock=self._create_generator())
       except SyntaxError as e:
-        raise ValueError('Invalid VCF header %s' % str(e))
+        raise ValueError('An exception was raised when reading header from VCF '
 Review comment:
   <!--new_thread; commit:7f28b9aa6b0f1e5d4b1ef2ed0cb1a97249db9b70; resolved:0-->
   How about following (without using new lines).
   'An exception was raised when reading header from VCF file %s: %s'

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> Add I/O source for VCF files (python)
> -------------------------------------
>                 Key: BEAM-2774
>                 URL:
>             Project: Beam
>          Issue Type: New Feature
>          Components: sdk-py-core
>            Reporter: Asha Rostamianfar
>            Assignee: Miles Saul
>   Original Estimate: 336h
>  Remaining Estimate: 336h
> A new I/O source for reading (and eventually writing) VCF files [1] for Python. The design
doc is available at
> [1]

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