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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: beam_PerformanceTests_Python #491
Date Fri, 27 Oct 2017 06:22:46 GMT
See <https://builds.apache.org/job/beam_PerformanceTests_Python/491/display/redirect?page=changes>

Changes:

[klk] Stage the pipeline in Python DataflowRunner

------------------------------------------
Started by timer
[EnvInject] - Loading node environment variables.
Building remotely on beam6 (beam) in workspace <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/>
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/apache/beam.git # timeout=10
Fetching upstream changes from https://github.com/apache/beam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/apache/beam.git +refs/heads/*:refs/remotes/origin/*
+refs/pull/${ghprbPullId}/*:refs/remotes/origin/pr/${ghprbPullId}/*
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 1f680307889e03fae3746585c6baf963b2bdf9ba (origin/master)
Commit message: "This closes #4010: [BEAM-3074] Stage the pipeline in Python DataflowRunner"
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 1f680307889e03fae3746585c6baf963b2bdf9ba
 > git rev-list 0c2211375d1fc4abebda7aa7cf7960e7b09fdc1b # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
[EnvInject] - Executing scripts and injecting environment variables after the SCM step.
[EnvInject] - Injecting as environment variables the properties content 
SPARK_LOCAL_IP=127.0.0.1

[EnvInject] - Variables injected successfully.
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins5536837657517006361.sh
+ rm -rf PerfKitBenchmarker
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins2572978783176830323.sh
+ git clone https://github.com/GoogleCloudPlatform/PerfKitBenchmarker.git
Cloning into 'PerfKitBenchmarker'...
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins7347003087878554748.sh
+ pip install --user -r PerfKitBenchmarker/requirements.txt
Requirement already satisfied: absl-py in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 14))
Requirement already satisfied: jinja2>=2.7 in /usr/local/lib/python2.7/dist-packages (from
-r PerfKitBenchmarker/requirements.txt (line 15))
Requirement already satisfied: setuptools in /usr/lib/python2.7/dist-packages (from -r PerfKitBenchmarker/requirements.txt
(line 16))
Requirement already satisfied: colorlog[windows]==2.6.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 17))
Requirement already satisfied: blinker>=1.3 in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 18))
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(from -r PerfKitBenchmarker/requirements.txt (line 19))
Requirement already satisfied: PyYAML==3.12 in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 20))
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(from -r PerfKitBenchmarker/requirements.txt (line 21))
Requirement already satisfied: numpy in /home/jenkins/.local/lib/python2.7/site-packages (from
-r PerfKitBenchmarker/requirements.txt (line 22))
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(from -r PerfKitBenchmarker/requirements.txt (line 23))
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(from -r PerfKitBenchmarker/requirements.txt (line 24))
Requirement already satisfied: six in /home/jenkins/.local/lib/python2.7/site-packages (from
absl-py->-r PerfKitBenchmarker/requirements.txt (line 14))
Requirement already satisfied: MarkupSafe>=0.23 in /usr/local/lib/python2.7/dist-packages
(from jinja2>=2.7->-r PerfKitBenchmarker/requirements.txt (line 15))
Requirement already satisfied: colorama; extra == "windows" in /usr/lib/python2.7/dist-packages
(from colorlog[windows]==2.6.0->-r PerfKitBenchmarker/requirements.txt (line 17))
/usr/local/lib/python2.7/dist-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:318:
SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension
to TLS is not available on this platform. This may cause the server to present an incorrect
TLS certificate, which can cause validation failures. You can upgrade to a newer version of
Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#snimissingwarning.
  SNIMissingWarning
/usr/local/lib/python2.7/dist-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:122:
InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3
from configuring SSL appropriately and may cause certain SSL connections to fail. You can
upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#insecureplatformwarning.
  InsecurePlatformWarning
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins1603795645916048594.sh
+ pip install --user -e 'sdks/python/[gcp,test]'
Obtaining file://<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/sdks/python>
Requirement already satisfied: avro<2.0.0,>=1.8.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: crcmod<2.0,>=1.7 in /usr/lib/python2.7/dist-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: dill==0.2.6 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: grpcio<2.0,>=1.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: httplib2<0.10,>=0.8 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: mock<3.0.0,>=1.0.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
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(from apache-beam==2.3.0.dev)
Requirement already satisfied: protobuf<=3.3.0,>=3.2.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
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(from apache-beam==2.3.0.dev)
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(from apache-beam==2.3.0.dev)
Requirement already satisfied: typing<3.7.0,>=3.6.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: google-apitools<=0.5.11,>=0.5.10 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
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(from apache-beam==2.3.0.dev)
Requirement already satisfied: googledatastore==7.0.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
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(from apache-beam==2.3.0.dev)
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(from apache-beam==2.3.0.dev)
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(from apache-beam==2.3.0.dev)
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(from grpcio<2.0,>=1.0->apache-beam==2.3.0.dev)
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(from grpcio<2.0,>=1.0->apache-beam==2.3.0.dev)
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(from mock<3.0.0,>=1.0.1->apache-beam==2.3.0.dev)
Requirement already satisfied: pbr>=0.11 in /home/jenkins/.local/lib/python2.7/site-packages
(from mock<3.0.0,>=1.0.1->apache-beam==2.3.0.dev)
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(from oauth2client<4.0.0,>=2.0.1->apache-beam==2.3.0.dev)
Requirement already satisfied: pyasn1-modules>=0.0.5 in /home/jenkins/.local/lib/python2.7/site-packages
(from oauth2client<4.0.0,>=2.0.1->apache-beam==2.3.0.dev)
Requirement already satisfied: rsa>=3.1.4 in /home/jenkins/.local/lib/python2.7/site-packages
(from oauth2client<4.0.0,>=2.0.1->apache-beam==2.3.0.dev)
Requirement already satisfied: setuptools in /usr/lib/python2.7/dist-packages (from protobuf<=3.3.0,>=3.2.0->apache-beam==2.3.0.dev)
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(from proto-google-cloud-datastore-v1<=0.90.4,>=0.90.0->apache-beam==2.3.0.dev)
Requirement already satisfied: google-cloud-core<0.26dev,>=0.25.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
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(from google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: google-auth<2.0.0dev,>=0.4.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
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(from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: proto-google-cloud-pubsub-v1[grpc]<0.16dev,>=0.15.4 in
/home/jenkins/.local/lib/python2.7/site-packages (from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: grpc-google-iam-v1<0.12dev,>=0.11.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: cachetools>=2.0.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-auth<2.0.0dev,>=0.4.0->google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: future<0.17dev,>=0.16.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: ply==3.8 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: requests<3.0dev,>=2.13.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: idna<2.6,>=2.5 in /home/jenkins/.local/lib/python2.7/site-packages
(from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: urllib3<1.22,>=1.21.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/jenkins/.local/lib/python2.7/site-packages
(from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: certifi>=2017.4.17 in /home/jenkins/.local/lib/python2.7/site-packages
(from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Installing collected packages: apache-beam
  Found existing installation: apache-beam 2.3.0.dev0
    Uninstalling apache-beam-2.3.0.dev0:
      Successfully uninstalled apache-beam-2.3.0.dev0
  Running setup.py develop for apache-beam
Successfully installed apache-beam
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins6937094336024652753.sh
+ python PerfKitBenchmarker/pkb.py --project=apache-beam-testing --dpb_log_level=INFO --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn
--bigquery_table=beam_performance.pkb_results --official=true --beam_sdk=python --benchmarks=beam_integration_benchmark
--beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output
2017-10-27 06:00:30,414 859cc211 MainThread INFO     Verbose logging to: /tmp/perfkitbenchmarker/runs/859cc211/pkb.log
2017-10-27 06:00:30,415 859cc211 MainThread INFO     PerfKitBenchmarker version: v1.12.0-168-g7011ecb
2017-10-27 06:00:30,416 859cc211 MainThread INFO     Flag values:
--beam_sdk=python
--beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output
--maven_binary=/home/jenkins/tools/maven/latest/bin/mvn
--project=apache-beam-testing
--bigquery_table=beam_performance.pkb_results
--official
--dpb_log_level=INFO
--benchmarks=beam_integration_benchmark
2017-10-27 06:00:31,016 859cc211 MainThread WARNING  The key "flags" was not in the default
config, but was in user overrides. This may indicate a typo.
2017-10-27 06:00:31,245 859cc211 MainThread beam_integration_benchmark(1/1) INFO     Provisioning
resources for benchmark beam_integration_benchmark
2017-10-27 06:00:31,249 859cc211 MainThread beam_integration_benchmark(1/1) INFO     Preparing
benchmark beam_integration_benchmark
2017-10-27 06:00:31,249 859cc211 MainThread beam_integration_benchmark(1/1) INFO     Running:
git clone https://github.com/apache/beam.git
2017-10-27 06:00:42,296 859cc211 MainThread beam_integration_benchmark(1/1) INFO     Running:
/home/jenkins/tools/maven/latest/bin/mvn clean install -DskipTests -Dcheckstyle.skip=true
-Pdataflow-runner
2017-10-27 06:12:21,129 859cc211 MainThread beam_integration_benchmark(1/1) INFO     Running
benchmark beam_integration_benchmark
2017-10-27 06:12:21,146 859cc211 MainThread beam_integration_benchmark(1/1) INFO     Running:
python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing"
"--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it"
"--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner
--sdk_location=/tmp/perfkitbenchmarker/runs/859cc211/beam/sdks/python/target/apache-beam-2.3.0.dev.tar.gz
2017-10-27 06:22:21,166 859cc211 Thread-4 ERROR    IssueCommand timed out after 600 seconds.
Killing command "python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test
--attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it"
"--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output"
--runner=TestDataflowRunner --sdk_location=/tmp/perfkitbenchmarker/runs/859cc211/beam/sdks/python/target/apache-beam-2.3.0.dev.tar.gz".
2017-10-27 06:22:21,173 859cc211 MainThread beam_integration_benchmark(1/1) INFO     Ran python
setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing"
"--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it"
"--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner
--sdk_location=/tmp/perfkitbenchmarker/runs/859cc211/beam/sdks/python/target/apache-beam-2.3.0.dev.tar.gz.
Got return code (-9).
STDOUT: running nosetests
running egg_info
writing requirements to apache_beam.egg-info/requires.txt
writing apache_beam.egg-info/PKG-INFO
writing top-level names to apache_beam.egg-info/top_level.txt
writing dependency_links to apache_beam.egg-info/dependency_links.txt
writing entry points to apache_beam.egg-info/entry_points.txt
reading manifest file 'apache_beam.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'apache_beam.egg-info/SOURCES.txt'

STDERR: /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option:
'python_requires'
  warnings.warn(msg)
test_wordcount_fnapi_it (apache_beam.examples.wordcount_it_test.WordCountIT) ... /tmp/perfkitbenchmarker/runs/859cc211/beam/sdks/python/apache_beam/io/gcp/gcsio.py:122:
DeprecationWarning: object() takes no parameters
  super(GcsIO, cls).__new__(cls, storage_client))
/tmp/perfkitbenchmarker/runs/859cc211/beam/sdks/python/apache_beam/coders/typecoders.py:134:
UserWarning: Using fallback coder for typehint: Any.
  warnings.warn('Using fallback coder for typehint: %r.' % typehint)

2017-10-27 06:22:21,173 859cc211 MainThread beam_integration_benchmark(1/1) ERROR    Error
during benchmark beam_integration_benchmark
Traceback (most recent call last):
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",>
line 572, in RunBenchmark
    DoRunPhase(spec, collector, detailed_timer)
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",>
line 483, in DoRunPhase
    samples = spec.BenchmarkRun(spec)
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/linux_benchmarks/beam_integration_benchmark.py",>
line 159, in Run
    job_type=job_type)
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/providers/gcp/gcp_dpb_dataflow.py",>
line 90, in SubmitJob
    assert retcode == 0, "Integration Test Failed."
AssertionError: Integration Test Failed.
2017-10-27 06:22:21,174 859cc211 MainThread beam_integration_benchmark(1/1) INFO     Cleaning
up benchmark beam_integration_benchmark
2017-10-27 06:22:21,177 859cc211 MainThread beam_integration_benchmark(1/1) ERROR    Benchmark
1/1 beam_integration_benchmark (UID: beam_integration_benchmark0) failed. Execution will continue.
2017-10-27 06:22:21,202 859cc211 MainThread INFO     Benchmark run statuses:
---------------------------------------------------------------
Name                        UID                          Status
---------------------------------------------------------------
beam_integration_benchmark  beam_integration_benchmark0  FAILED
---------------------------------------------------------------
Success rate: 0.00% (0/1)
2017-10-27 06:22:21,202 859cc211 MainThread INFO     Complete logs can be found at: /tmp/perfkitbenchmarker/runs/859cc211/pkb.log
2017-10-27 06:22:21,202 859cc211 MainThread INFO     Completion statuses can be found at:
/tmp/perfkitbenchmarker/runs/859cc211/completion_statuses.json
Build step 'Execute shell' marked build as failure
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