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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: beam_PerformanceTests_Python #461
Date Wed, 18 Oct 2017 06:22:32 GMT
See <https://builds.apache.org/job/beam_PerformanceTests_Python/461/display/redirect>

------------------------------------------
Started by timer
[EnvInject] - Loading node environment variables.
Building remotely on beam3 (beam) in workspace <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/>
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/apache/beam.git # timeout=10
Fetching upstream changes from https://github.com/apache/beam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/apache/beam.git +refs/heads/*:refs/remotes/origin/*
+refs/pull/${ghprbPullId}/*:refs/remotes/origin/pr/${ghprbPullId}/*
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision de7cc05cc67d1aa6331cddc17c2e02ed0efbe37d (origin/master)
Commit message: "This closes #3938: [BEAM-2674] Add custom rehydration; reinstate proto roundtrip
for Java DirectRunner"
 > git config core.sparsecheckout # timeout=10
 > git checkout -f de7cc05cc67d1aa6331cddc17c2e02ed0efbe37d
 > git rev-list de7cc05cc67d1aa6331cddc17c2e02ed0efbe37d # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
[EnvInject] - Executing scripts and injecting environment variables after the SCM step.
[EnvInject] - Injecting as environment variables the properties content 
SPARK_LOCAL_IP=127.0.0.1

[EnvInject] - Variables injected successfully.
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins5800789707936811445.sh
+ rm -rf PerfKitBenchmarker
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins2019672464813627486.sh
+ git clone https://github.com/GoogleCloudPlatform/PerfKitBenchmarker.git
Cloning into 'PerfKitBenchmarker'...
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins1644852133277033587.sh
+ pip install --user -r PerfKitBenchmarker/requirements.txt
Requirement already satisfied: absl-py in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 14))
Requirement already satisfied: jinja2>=2.7 in /usr/local/lib/python2.7/dist-packages (from
-r PerfKitBenchmarker/requirements.txt (line 15))
Requirement already satisfied: setuptools in /usr/lib/python2.7/dist-packages (from -r PerfKitBenchmarker/requirements.txt
(line 16))
Requirement already satisfied: colorlog[windows]==2.6.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 17))
Requirement already satisfied: blinker>=1.3 in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 18))
Requirement already satisfied: futures>=3.0.3 in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 19))
Requirement already satisfied: PyYAML==3.12 in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 20))
Requirement already satisfied: pint>=0.7 in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 21))
Requirement already satisfied: numpy in /home/jenkins/.local/lib/python2.7/site-packages (from
-r PerfKitBenchmarker/requirements.txt (line 22))
Requirement already satisfied: functools32 in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 23))
Requirement already satisfied: contextlib2>=0.5.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from -r PerfKitBenchmarker/requirements.txt (line 24))
Requirement already satisfied: six in /home/jenkins/.local/lib/python2.7/site-packages (from
absl-py->-r PerfKitBenchmarker/requirements.txt (line 14))
Requirement already satisfied: MarkupSafe in /usr/local/lib/python2.7/dist-packages (from
jinja2>=2.7->-r PerfKitBenchmarker/requirements.txt (line 15))
Requirement already satisfied: colorama; extra == "windows" in /usr/lib/python2.7/dist-packages
(from colorlog[windows]==2.6.0->-r PerfKitBenchmarker/requirements.txt (line 17))
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins7985866330802702704.sh
+ pip install --user -e 'sdks/python/[gcp,test]'
Obtaining file://<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/sdks/python>
Requirement already satisfied: avro<2.0.0,>=1.8.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: crcmod<2.0,>=1.7 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: dill==0.2.6 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: grpcio<2.0,>=1.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: httplib2<0.10,>=0.8 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: mock<3.0.0,>=1.0.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: oauth2client<4.0.0,>=2.0.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: protobuf<=3.3.0,>=3.2.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: pyyaml<4.0.0,>=3.12 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: six<1.11,>=1.9 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: typing<3.7.0,>=3.6.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
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(from apache-beam==2.3.0.dev)
Requirement already satisfied: proto-google-cloud-datastore-v1<=0.90.4,>=0.90.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: googledatastore==7.0.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: google-cloud-pubsub==0.26.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
Requirement already satisfied: google-cloud-bigquery==0.25.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from apache-beam==2.3.0.dev)
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(from apache-beam==2.3.0.dev)
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(from grpcio<2.0,>=1.0->apache-beam==2.3.0.dev)
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(from grpcio<2.0,>=1.0->apache-beam==2.3.0.dev)
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(from mock<3.0.0,>=1.0.1->apache-beam==2.3.0.dev)
Requirement already satisfied: pbr>=0.11 in /home/jenkins/.local/lib/python2.7/site-packages
(from mock<3.0.0,>=1.0.1->apache-beam==2.3.0.dev)
Requirement already satisfied: pyasn1>=0.1.7 in /home/jenkins/.local/lib/python2.7/site-packages
(from oauth2client<4.0.0,>=2.0.1->apache-beam==2.3.0.dev)
Requirement already satisfied: pyasn1-modules>=0.0.5 in /home/jenkins/.local/lib/python2.7/site-packages
(from oauth2client<4.0.0,>=2.0.1->apache-beam==2.3.0.dev)
Requirement already satisfied: rsa>=3.1.4 in /home/jenkins/.local/lib/python2.7/site-packages
(from oauth2client<4.0.0,>=2.0.1->apache-beam==2.3.0.dev)
Requirement already satisfied: setuptools in /usr/lib/python2.7/dist-packages (from protobuf<=3.3.0,>=3.2.0->apache-beam==2.3.0.dev)
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(from proto-google-cloud-datastore-v1<=0.90.4,>=0.90.0->apache-beam==2.3.0.dev)
Requirement already satisfied: google-cloud-core<0.26dev,>=0.25.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: google-auth-httplib2 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: google-auth<2.0.0dev,>=0.4.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: google-gax<0.16dev,>=0.15.7 in /home/jenkins/.local/lib/python2.7/site-packages
(from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: proto-google-cloud-pubsub-v1[grpc]<0.16dev,>=0.15.4 in
/home/jenkins/.local/lib/python2.7/site-packages (from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: grpc-google-iam-v1<0.12dev,>=0.11.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: cachetools>=2.0.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-auth<2.0.0dev,>=0.4.0->google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: future<0.17dev,>=0.16.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: ply==3.8 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: requests<3.0dev,>=2.13.0 in /home/jenkins/.local/lib/python2.7/site-packages
(from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: idna<2.6,>=2.5 in /home/jenkins/.local/lib/python2.7/site-packages
(from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: urllib3<1.22,>=1.21.1 in /home/jenkins/.local/lib/python2.7/site-packages
(from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/jenkins/.local/lib/python2.7/site-packages
(from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Requirement already satisfied: certifi>=2017.4.17 in /home/jenkins/.local/lib/python2.7/site-packages
(from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev)
Installing collected packages: apache-beam
  Found existing installation: apache-beam 2.3.0.dev0
    Uninstalling apache-beam-2.3.0.dev0:
      Successfully uninstalled apache-beam-2.3.0.dev0
  Running setup.py develop for apache-beam
Successfully installed apache-beam
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins1660715551082936654.sh
+ python PerfKitBenchmarker/pkb.py --project=apache-beam-testing --dpb_log_level=INFO --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn
--bigquery_table=beam_performance.pkb_results --official=true --beam_sdk=python --benchmarks=beam_integration_benchmark
--beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output
2017-10-18 06:01:23,638 6a245dfc MainThread INFO     Verbose logging to: /tmp/perfkitbenchmarker/runs/6a245dfc/pkb.log
2017-10-18 06:01:23,639 6a245dfc MainThread INFO     PerfKitBenchmarker version: v1.12.0-162-g1572ac1
2017-10-18 06:01:23,640 6a245dfc MainThread INFO     Flag values:
--beam_sdk=python
--beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output
--maven_binary=/home/jenkins/tools/maven/latest/bin/mvn
--project=apache-beam-testing
--bigquery_table=beam_performance.pkb_results
--official
--dpb_log_level=INFO
--benchmarks=beam_integration_benchmark
2017-10-18 06:01:23,885 6a245dfc MainThread WARNING  The key "flags" was not in the default
config, but was in user overrides. This may indicate a typo.
2017-10-18 06:01:24,054 6a245dfc MainThread beam_integration_benchmark(1/1) INFO     Provisioning
resources for benchmark beam_integration_benchmark
2017-10-18 06:01:24,057 6a245dfc MainThread beam_integration_benchmark(1/1) INFO     Preparing
benchmark beam_integration_benchmark
2017-10-18 06:01:24,058 6a245dfc MainThread beam_integration_benchmark(1/1) INFO     Running:
git clone https://github.com/apache/beam.git
2017-10-18 06:01:31,536 6a245dfc MainThread beam_integration_benchmark(1/1) INFO     Running:
/home/jenkins/tools/maven/latest/bin/mvn clean install -DskipTests -Dcheckstyle.skip=true
-Pdataflow-runner
2017-10-18 06:12:13,533 6a245dfc MainThread beam_integration_benchmark(1/1) INFO     Running
benchmark beam_integration_benchmark
2017-10-18 06:12:13,579 6a245dfc MainThread beam_integration_benchmark(1/1) INFO     Running:
python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing"
"--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it"
"--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner
--sdk_location=/tmp/perfkitbenchmarker/runs/6a245dfc/beam/sdks/python/target/apache-beam-2.3.0.dev.tar.gz
2017-10-18 06:22:13,585 6a245dfc Thread-4 ERROR    IssueCommand timed out after 600 seconds.
Killing command "python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test
--attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it"
"--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output"
--runner=TestDataflowRunner --sdk_location=/tmp/perfkitbenchmarker/runs/6a245dfc/beam/sdks/python/target/apache-beam-2.3.0.dev.tar.gz".
2017-10-18 06:22:13,591 6a245dfc MainThread beam_integration_benchmark(1/1) INFO     Ran python
setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing"
"--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it"
"--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner
--sdk_location=/tmp/perfkitbenchmarker/runs/6a245dfc/beam/sdks/python/target/apache-beam-2.3.0.dev.tar.gz.
Got return code (-9).
STDOUT: running nosetests
running egg_info
writing requirements to apache_beam.egg-info/requires.txt
writing apache_beam.egg-info/PKG-INFO
writing top-level names to apache_beam.egg-info/top_level.txt
writing dependency_links to apache_beam.egg-info/dependency_links.txt
writing entry points to apache_beam.egg-info/entry_points.txt
reading manifest file 'apache_beam.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'apache_beam.egg-info/SOURCES.txt'

STDERR: test_wordcount_fnapi_it (apache_beam.examples.wordcount_it_test.WordCountIT) ... /tmp/perfkitbenchmarker/runs/6a245dfc/beam/sdks/python/apache_beam/io/gcp/gcsio.py:122:
DeprecationWarning: object() takes no parameters
  super(GcsIO, cls).__new__(cls, storage_client))
/tmp/perfkitbenchmarker/runs/6a245dfc/beam/sdks/python/apache_beam/coders/typecoders.py:134:
UserWarning: Using fallback coder for typehint: Any.
  warnings.warn('Using fallback coder for typehint: %r.' % typehint)

2017-10-18 06:22:13,592 6a245dfc MainThread beam_integration_benchmark(1/1) ERROR    Error
during benchmark beam_integration_benchmark
Traceback (most recent call last):
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",>
line 565, in RunBenchmark
    DoRunPhase(spec, collector, detailed_timer)
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",>
line 478, in DoRunPhase
    samples = spec.BenchmarkRun(spec)
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/linux_benchmarks/beam_integration_benchmark.py",>
line 159, in Run
    job_type=job_type)
  File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/providers/gcp/gcp_dpb_dataflow.py",>
line 90, in SubmitJob
    assert retcode == 0, "Integration Test Failed."
AssertionError: Integration Test Failed.
2017-10-18 06:22:13,593 6a245dfc MainThread beam_integration_benchmark(1/1) INFO     Cleaning
up benchmark beam_integration_benchmark
2017-10-18 06:22:13,595 6a245dfc MainThread beam_integration_benchmark(1/1) ERROR    Benchmark
1/1 beam_integration_benchmark (UID: beam_integration_benchmark0) failed. Execution will continue.
2017-10-18 06:22:13,637 6a245dfc MainThread INFO     Benchmark run statuses:
---------------------------------------------------------------
Name                        UID                          Status
---------------------------------------------------------------
beam_integration_benchmark  beam_integration_benchmark0  FAILED
---------------------------------------------------------------
Success rate: 0.00% (0/1)
2017-10-18 06:22:13,637 6a245dfc MainThread INFO     Complete logs can be found at: /tmp/perfkitbenchmarker/runs/6a245dfc/pkb.log
2017-10-18 06:22:13,637 6a245dfc MainThread INFO     Completion statuses can be found at:
/tmp/perfkitbenchmarker/runs/6a245dfc/completion_statuses.json
Build step 'Execute shell' marked build as failure

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