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From "Daniel Harper (JIRA)" <j...@apache.org>
Subject [jira] [Updated] (BEAM-2807) NullPointerException during checkpoint on FlinkRunner
Date Fri, 25 Aug 2017 13:31:00 GMT

     [ https://issues.apache.org/jira/browse/BEAM-2807?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Daniel Harper updated BEAM-2807:
--------------------------------
    Component/s:     (was: beam-model)
                 runner-flink

> NullPointerException during checkpoint on FlinkRunner
> -----------------------------------------------------
>
>                 Key: BEAM-2807
>                 URL: https://issues.apache.org/jira/browse/BEAM-2807
>             Project: Beam
>          Issue Type: Bug
>          Components: runner-flink
>    Affects Versions: 2.1.0
>            Reporter: Daniel Harper
>            Assignee: Kenneth Knowles
>            Priority: Blocker
>
> *Beam version:* 2.1.0
> *Runner:* FlinkRunner
> We're seeing the following exception when checkpointing, which is causing our job to
restart
> {code}
> 2017-08-25 09:42:17,658 INFO  org.apache.flink.runtime.taskmanager.Task             
       - Combine.perKey(Count) -> ParMultiDo(ToConcurrentStreamResult) -> ParMultiDo(Anonymous)
-> ParMultiDo(ApplyShardingKey) -> ToKeyedWorkItem (7/32) (f00a31b722a31030f18d83ac613de21d)
switched from RUNNING to FAILED.
> AsynchronousException{java.lang.Exception: Could not materialize checkpoint 2 for operator
Combine.perKey(Count) -> ParMultiDo(ToConcurrentStreamResult) -> ParMultiDo(Anonymous)
-> ParMultiDo(ApplyShardingKey) -> ToKeyedWorkItem (7/32).}
>     at org.apache.flink.streaming.runtime.tasks.StreamTask$AsyncCheckpointRunnable.run(StreamTask.java:966)
>     at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
>     at java.util.concurrent.FutureTask.run(FutureTask.java:266)
>     at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
>     at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
>     at java.lang.Thread.run(Thread.java:748)
> Caused by: java.lang.Exception: Could not materialize checkpoint 2 for operator Combine.perKey(Count)
-> ParMultiDo(ToConcurrentStreamResult) -> ParMultiDo(Anonymous) -> ParMultiDo(ApplyShardingKey)
-> ToKeyedWorkItem (7/32).
>     ... 6 more
> Caused by: java.util.concurrent.ExecutionException: java.lang.NullPointerException
>     at java.util.concurrent.FutureTask.report(FutureTask.java:122)
>     at java.util.concurrent.FutureTask.get(FutureTask.java:192)
>     at org.apache.flink.util.FutureUtil.runIfNotDoneAndGet(FutureUtil.java:43)
>     at org.apache.flink.streaming.runtime.tasks.StreamTask$AsyncCheckpointRunnable.run(StreamTask.java:893)
>     ... 5 more
>     Suppressed: java.lang.Exception: Could not properly cancel managed keyed state future.
>         at org.apache.flink.streaming.api.operators.OperatorSnapshotResult.cancel(OperatorSnapshotResult.java:90)
>         at org.apache.flink.streaming.runtime.tasks.StreamTask$AsyncCheckpointRunnable.cleanup(StreamTask.java:1018)
>         at org.apache.flink.streaming.runtime.tasks.StreamTask$AsyncCheckpointRunnable.run(StreamTask.java:957)
>         ... 5 more
>     Caused by: java.util.concurrent.ExecutionException: java.lang.NullPointerException
>         at java.util.concurrent.FutureTask.report(FutureTask.java:122)
>         at java.util.concurrent.FutureTask.get(FutureTask.java:192)
>         at org.apache.flink.util.FutureUtil.runIfNotDoneAndGet(FutureUtil.java:43)
>         at org.apache.flink.runtime.state.StateUtil.discardStateFuture(StateUtil.java:85)
>         at org.apache.flink.streaming.api.operators.OperatorSnapshotResult.cancel(OperatorSnapshotResult.java:88)
>         ... 7 more
>     Caused by: java.lang.NullPointerException
>         at java.io.DataOutputStream.writeUTF(DataOutputStream.java:347)
>         at java.io.DataOutputStream.writeUTF(DataOutputStream.java:323)
>         at org.apache.beam.runners.flink.translation.types.CoderTypeSerializer$CoderTypeSerializerConfigSnapshot.write(CoderTypeSerializer.java:189)
>         at org.apache.flink.api.common.typeutils.TypeSerializerSerializationUtil$TypeSerializerConfigSnapshotSerializationProxy.write(TypeSerializerSerializationUtil.java:413)
>         at org.apache.flink.api.common.typeutils.TypeSerializerSerializationUtil.writeSerializerConfigSnapshot(TypeSerializerSerializationUtil.java:229)
>         at org.apache.flink.api.common.typeutils.TypeSerializerSerializationUtil.writeSerializersAndConfigsWithResilience(TypeSerializerSerializationUtil.java:151)
>         at org.apache.flink.runtime.state.KeyedBackendStateMetaInfoSnapshotReaderWriters$KeyedBackendStateMetaInfoWriterV3.writeStateMetaInfo(KeyedBackendStateMetaInfoSnapshotReaderWriters.java:107)
>         at org.apache.flink.runtime.state.KeyedBackendSerializationProxy.write(KeyedBackendSerializationProxy.java:104)
>         at org.apache.flink.runtime.state.heap.HeapKeyedStateBackend$1.performOperation(HeapKeyedStateBackend.java:293)
>         at org.apache.flink.runtime.state.heap.HeapKeyedStateBackend$1.performOperation(HeapKeyedStateBackend.java:286)
>         at org.apache.flink.runtime.io.async.AbstractAsyncIOCallable.call(AbstractAsyncIOCallable.java:72)
>         at java.util.concurrent.FutureTask.run(FutureTask.java:266)
>         at org.apache.flink.runtime.state.heap.HeapKeyedStateBackend.snapshot(HeapKeyedStateBackend.java:329)
>         at org.apache.flink.streaming.api.operators.AbstractStreamOperator.snapshotState(AbstractStreamOperator.java:397)
>         at org.apache.flink.streaming.runtime.tasks.StreamTask$CheckpointingOperation.checkpointStreamOperator(StreamTask.java:1157)
>         at org.apache.flink.streaming.runtime.tasks.StreamTask$CheckpointingOperation.executeCheckpointing(StreamTask.java:1089)
>         at org.apache.flink.streaming.runtime.tasks.StreamTask.checkpointState(StreamTask.java:653)
>         at org.apache.flink.streaming.runtime.tasks.StreamTask.performCheckpoint(StreamTask.java:589)
>         at org.apache.flink.streaming.runtime.tasks.StreamTask.triggerCheckpointOnBarrier(StreamTask.java:542)
>         at org.apache.flink.streaming.runtime.io.BarrierTracker.notifyCheckpoint(BarrierTracker.java:263)
>         at org.apache.flink.streaming.runtime.io.BarrierTracker.processBarrier(BarrierTracker.java:178)
>         at org.apache.flink.streaming.runtime.io.BarrierTracker.getNextNonBlocked(BarrierTracker.java:97)
>         at org.apache.flink.streaming.runtime.io.StreamInputProcessor.processInput(StreamInputProcessor.java:213)
>         at org.apache.flink.streaming.runtime.tasks.OneInputStreamTask.run(OneInputStreamTask.java:69)
>         at org.apache.flink.streaming.runtime.tasks.StreamTask.invoke(StreamTask.java:262)
>         at org.apache.flink.runtime.taskmanager.Task.run(Task.java:702)
>         ... 1 more
> {code}
> From debugging locally I've narrowed it down to here 
> {code}
>     Caused by: java.lang.NullPointerException
>         at java.io.DataOutputStream.writeUTF(DataOutputStream.java:347)
>         at java.io.DataOutputStream.writeUTF(DataOutputStream.java:323)
>         at org.apache.beam.runners.flink.translation.types.CoderTypeSerializer$CoderTypeSerializerConfigSnapshot.write(CoderTypeSerializer.java:189)
>         at org.apache.flink.api.common.typeutils.TypeSerializerSerializationUtil$TypeSerializerConfigSnapshotSerializationProxy.write(TypeSerializerSerializationUtil.java:413)
> {code}
> Specifically in [CoderTypeSerializer.java#189|https://github.com/apache/beam/blob/609016d700c84800cf942482fb7cd2ddaa420b00/runners/flink/src/main/java/org/apache/beam/runners/flink/translation/types/CoderTypeSerializer.java#L189],
when it calls {{DataOutputStream.writeUTF(String)}}, there is some logic in the {{writeUTF}}
method that gets the string length. This is what is causing the NPE as the {{coderName}} field
is null.
> I think this stems from the [constructor|https://github.com/apache/beam/blob/609016d700c84800cf942482fb7cd2ddaa420b00/runners/flink/src/main/java/org/apache/beam/runners/flink/translation/types/CoderTypeSerializer.java#L164]
which sets the {{coderName}} by calling {{.getClass().getCanonicalName();}} on the {{coder}}
that is passed into the constructor
> On debugging I've noticed this returns {{null}} when calling {{.getClass().getCanonicalName();}}
on an instance of [Count$CountFn|https://github.com/apache/beam/blob/2040e2bd4203f81ea63966110e4eef3a1ff72393/sdks/java/core/src/main/java/org/apache/beam/sdk/transforms/Count.java#L134]



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