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From "Daniel Halperin (JIRA)" <j...@apache.org>
Subject [jira] [Created] (BEAM-748) Issues with local processes in MongoDbIO and JdbcIO
Date Thu, 13 Oct 2016 16:51:20 GMT
Daniel Halperin created BEAM-748:
------------------------------------

             Summary: Issues with local processes in MongoDbIO and JdbcIO
                 Key: BEAM-748
                 URL: https://issues.apache.org/jira/browse/BEAM-748
             Project: Beam
          Issue Type: Bug
          Components: testing
    Affects Versions: Not applicable
            Reporter: Daniel Halperin
            Assignee: Jean-Baptiste Onofré


Hey JB, Can you take a look at these issues?

https://builds.apache.org/job/beam_PreCommit_MavenVerify/3931/

A few different types, likely due to issues setting up databases and reusing them across tests?

{code}
java.net.ConnectException : Error connecting to server localhost on port 1,527 with message
Connection refused.
{code}

{code}
A lock could not be obtained due to a deadlock, cycle of locks and waiters is:
Lock : ROW, SYSCOLUMNS, (4,42)
  Waiting XID : {187, S} , APP, insert into BEAM values (?,?)
  Granted XID : {185, S} 
Lock : ROW, SYSTABLES, (1,30)
  Waiting XID : {185, X} , APP, drop table BEAM
  Granted XID : {185, S} , {187, S} 
. The selected victim is XID : 187.
Stacktrace

java.sql.SQLTransactionRollbackException: 
A lock could not be obtained due to a deadlock, cycle of locks and waiters is:
Lock : ROW, SYSCOLUMNS, (4,42)
  Waiting XID : {187, S} , APP, insert into BEAM values (?,?)
  Granted XID : {185, S} 
Lock : ROW, SYSTABLES, (1,30)
  Waiting XID : {185, X} , APP, drop table BEAM
  Granted XID : {185, S} , {187, S} 
. The selected victim is XID : 187.
	at org.apache.derby.client.am.SQLExceptionFactory.getSQLException(Unknown Source)
	at org.apache.derby.client.am.SqlException.getSQLException(Unknown Source)
	at org.apache.derby.client.am.ClientConnection.prepareStatement(Unknown Source)
	at org.apache.beam.sdk.io.jdbc.JdbcIOTest.initTable(JdbcIOTest.java:106)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
	at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
	at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
	at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
	at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
	at org.junit.runners.Suite.runChild(Suite.java:127)
	at org.junit.runners.Suite.runChild(Suite.java:26)
	at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
	at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
	at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
	at org.apache.maven.surefire.junitcore.JUnitCore.run(JUnitCore.java:55)
	at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.createRequestAndRun(JUnitCoreWrapper.java:137)
	at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.executeEager(JUnitCoreWrapper.java:107)
	at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:83)
	at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:75)
	at org.apache.maven.surefire.junitcore.JUnitCoreProvider.invoke(JUnitCoreProvider.java:161)
	at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:290)
	at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:242)
	at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:121)
	Suppressed: java.sql.SQLException: Cannot close a connection while a transaction is still
active.
		at org.apache.derby.client.am.SQLExceptionFactory.getSQLException(Unknown Source)
		at org.apache.derby.client.am.SqlException.getSQLException(Unknown Source)
		at org.apache.derby.client.am.ClientConnection.closeResourcesX(Unknown Source)
		at org.apache.derby.client.am.ClientConnection.closeX(Unknown Source)
		at org.apache.derby.client.am.ClientConnection.close(Unknown Source)
		at org.apache.derby.client.net.NetConnection.close(Unknown Source)
		at org.apache.beam.sdk.io.jdbc.JdbcIOTest.initTable(JdbcIOTest.java:117)
		... 36 more
	Caused by: ERROR 25001: Cannot close a connection while a transaction is still active.
		at org.apache.derby.client.am.ClientConnection.checkForTransactionInProgress(Unknown Source)
		... 41 more
Caused by: ERROR 40001: A lock could not be obtained due to a deadlock, cycle of locks and
waiters is:
Lock : ROW, SYSCOLUMNS, (4,42)
  Waiting XID : {187, S} , APP, insert into BEAM values (?,?)
  Granted XID : {185, S} 
Lock : ROW, SYSTABLES, (1,30)
  Waiting XID : {185, X} , APP, drop table BEAM
  Granted XID : {185, S} , {187, S} 
. The selected victim is XID : 187.
	at org.apache.derby.client.am.ClientStatement.completeSqlca(Unknown Source)
	at org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown Source)
	at org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown Source)
	at org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown Source)
	at org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown Source)
	at org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown Source)
	at org.apache.derby.client.am.ClientStatement.readPrepareDescribeOutput(Unknown Source)
	at org.apache.derby.client.am.ClientPreparedStatement.readPrepareDescribeInputOutput(Unknown
Source)
	at org.apache.derby.client.am.ClientPreparedStatement.flowPrepareDescribeInputOutput(Unknown
Source)
	at org.apache.derby.client.am.ClientPreparedStatement.prepare(Unknown Source)
	at org.apache.derby.client.am.ClientConnection.prepareStatementX(Unknown Source)
	... 38 more
{code}





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