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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: beam_PostCommit_Python_MongoDBIO_IT #2340
Date Sun, 08 Mar 2020 00:09:20 GMT
See <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/2340/display/redirect>

Changes:


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> Task :sdks:python:test-suites:direct:py2:mongodbioIT
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Installing collected packages: crcmod, dill, fastavro, docopt, certifi, idna, chardet, urllib3,
requests, hdfs, httplib2, pbr, funcsigs, mock, numpy, pymongo, pyasn1, rsa, pyasn1-modules,
oauth2client, pyparsing, pydot, python-dateutil, pytz, avro, pyvcf, pyarrow, typing-extensions,
freezegun, nose, nose-xunitmp, pandas, parameterized, pyhamcrest, pyyaml, requests-mock, monotonic,
tenacity, atomicwrites, packaging, attrs, wcwidth, more-itertools, pytest, pytest-forked,
apipkg, execnet, pytest-xdist, pytest-timeout, apache-beam
  Running setup.py develop for apache-beam
Successfully installed apache-beam apipkg-1.5 atomicwrites-1.3.0 attrs-19.3.0 avro-1.9.2 certifi-2019.11.28
chardet-3.0.4 crcmod-1.7 dill-0.3.1.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.21.24 freezegun-0.3.15
funcsigs-1.0.2 hdfs-2.5.8 httplib2-0.12.0 idna-2.9 mock-2.0.0 monotonic-1.5 more-itertools-5.0.0
nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.16.6 oauth2client-3.0.0 packaging-20.3 pandas-0.24.2
parameterized-0.7.1 pbr-5.4.4 pyarrow-0.15.1 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1
pyhamcrest-1.10.1 pymongo-3.10.1 pyparsing-2.4.6 pytest-4.6.9 pytest-forked-1.1.3 pytest-timeout-1.3.4
pytest-xdist-1.31.0 python-dateutil-2.8.1 pytz-2019.3 pyvcf-0.6.8 pyyaml-5.3 requests-2.23.0
requests-mock-1.7.0 rsa-4.0 tenacity-5.1.5 typing-extensions-3.7.4.1 urllib3-1.25.8 wcwidth-0.1.8
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py>:82:
UserWarning: You are using Apache Beam with Python 2. New releases of Apache Beam will soon
support Python 3 only.
  'You are using Apache Beam with Python 2. '
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:__main__:Writing 100000 documents to mongodb
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:82:
FutureWarning: WriteToMongoDB is experimental.
  known_args.batch_size))
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
annotate_downstream_side_inputs at 0x7f23168e2de8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
fix_side_input_pcoll_coders at 0x7f23168e2ed8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
lift_combiners at 0x7f23168e2f50> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
expand_sdf at 0x7f23168e3050> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
expand_gbk at 0x7f23168e30c8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
sink_flattens at 0x7f23168e31b8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
greedily_fuse at 0x7f23168e3230> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
read_to_impulse at 0x7f23168e32a8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
impulse_to_input at 0x7f23168e3320> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
inject_timer_pcollections at 0x7f23168e3488> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
sort_stages at 0x7f23168e3500> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
window_pcollection_coders at 0x7f23168e3578> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner:Created Worker handler <apache_beam.runners.portability.fn_api_runner.EmbeddedWorkerHandler
object at 0x7f23169cf350> for environment urn: "beam:env:embedded_python:v1"

INFO:apache_beam.runners.portability.fn_api_runner:Running (ref_AppliedPTransform_Create/Impulse_3)+((ref_AppliedPTransform_Create/FlatMap(<lambda
at core.py:2643>)_4)+((ref_AppliedPTransform_Create/Map(decode)_6)+((ref_AppliedPTransform_Create
documents_7)+((ref_AppliedPTransform_WriteToMongoDB/ParDo(_GenerateObjectIdFn)_9)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/AddRandomKeys_11)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/Map(reify_timestamps)_13)+(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Write)))))))
INFO:apache_beam.runners.portability.fn_api_runner:Running (WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Read)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/FlatMap(restore_timestamps)_18)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/RemoveRandomKeys_19)+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_WriteMongoFn)_20)))
INFO:__main__:Writing 100000 documents to mongodb finished in 88.652 seconds
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:__main__:Reading from mongodb beam_mongodbio_it_db:integration_test_1583626062
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:101:
FutureWarning: ReadFromMongoDB is experimental.
  | 'Combine' >> beam.CombineGlobally(sum))
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
annotate_downstream_side_inputs at 0x7f23168e2de8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
fix_side_input_pcoll_coders at 0x7f23168e2ed8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
lift_combiners at 0x7f23168e2f50> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
expand_sdf at 0x7f23168e3050> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
expand_gbk at 0x7f23168e30c8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
sink_flattens at 0x7f23168e31b8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
greedily_fuse at 0x7f23168e3230> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
read_to_impulse at 0x7f23168e32a8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
impulse_to_input at 0x7f23168e3320> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
inject_timer_pcollections at 0x7f23168e3488> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
sort_stages at 0x7f23168e3500> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
window_pcollection_coders at 0x7f23168e3578> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner:Created Worker handler <apache_beam.runners.portability.fn_api_runner.EmbeddedWorkerHandler
object at 0x7f22e45bae50> for environment urn: "beam:env:embedded_python:v1"

INFO:apache_beam.runners.portability.fn_api_runner:Running ((ref_AppliedPTransform_ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/Impulse_5)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction))+((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/SplitAndSizeRestriction)+(ref_PCollection_PCollection_1_split/Write))
INFO:apache_beam.runners.portability.fn_api_runner:Running (ref_PCollection_PCollection_1_split/Read)+(((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/Process)+((ref_AppliedPTransform_Map_7)+((ref_AppliedPTransform_Combine/KeyWithVoid_9)+(Combine/CombinePerKey/Precombine))))+(Combine/CombinePerKey/Group/Write))
INFO:apache_beam.runners.portability.fn_api_runner:Running ((Combine/CombinePerKey/Group/Read)+(Combine/CombinePerKey/Merge))+((Combine/CombinePerKey/ExtractOutputs)+((ref_AppliedPTransform_Combine/UnKey_17)+(ref_PCollection_PCollection_9/Write)))
INFO:apache_beam.runners.portability.fn_api_runner:Running ((ref_AppliedPTransform_assert_that/Create/Impulse_26)+((ref_AppliedPTransform_assert_that/Create/FlatMap(<lambda
at core.py:2643>)_27)+((ref_AppliedPTransform_assert_that/Create/Map(decode)_29)+((ref_AppliedPTransform_assert_that/Group/pair_with_0_33)+(assert_that/Group/Flatten/Transcode/1)))))+(assert_that/Group/Flatten/Write/1)
INFO:apache_beam.runners.portability.fn_api_runner:Running ((ref_AppliedPTransform_Combine/DoOnce/Impulse_19)+((ref_AppliedPTransform_Combine/DoOnce/FlatMap(<lambda
at core.py:2643>)_20)+((ref_AppliedPTransform_Combine/DoOnce/Map(decode)_22)+((ref_AppliedPTransform_Combine/InjectDefault_23)+((ref_AppliedPTransform_assert_that/WindowInto(WindowIntoFn)_30)+((ref_AppliedPTransform_assert_that/ToVoidKey_31)+(ref_AppliedPTransform_assert_that/Group/pair_with_1_34)))))))+((assert_that/Group/Flatten/Transcode/0)+(assert_that/Group/Flatten/Write/0))
INFO:apache_beam.runners.portability.fn_api_runner:Running (assert_that/Group/Flatten/Read)+(assert_that/Group/GroupByKey/Write)
INFO:apache_beam.runners.portability.fn_api_runner:Running ((assert_that/Group/GroupByKey/Read)+(ref_AppliedPTransform_assert_that/Group/Map(_merge_tagged_vals_under_key)_40))+((ref_AppliedPTransform_assert_that/Unkey_41)+(ref_AppliedPTransform_assert_that/Match_42))
INFO:__main__:Read 100000 documents from mongodb finished in 4.927 seconds
mongoioit27274
mongoioit27274

FAILURE: Build failed with an exception.

* Where:
Build file '<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/test-suites/direct/py35/build.gradle'>
line: 78

* What went wrong:
Execution failed for task ':sdks:python:test-suites:direct:py35:mongodbioIT'.
> Process 'command 'sh'' finished with non-zero exit value 1

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to
get more log output. Run with --scan to get full insights.

* Get more help at https://help.gradle.org

Deprecated Gradle features were used in this build, making it incompatible with Gradle 6.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/5.2.1/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 2m 54s
4 actionable tasks: 4 executed

Publishing build scan...
https://gradle.com/s/wx6mlb47ymurc

Build step 'Invoke Gradle script' changed build result to FAILURE
Build step 'Invoke Gradle script' marked build as failure

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