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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: beam_PostCommit_Python_MongoDBIO_IT #2434
Date Wed, 18 Mar 2020 17:54:01 GMT
See <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/2434/display/redirect?page=changes>

Changes:

[github] Merge pull request #11147 from [BEAM-7923] Support dict and iterable


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Collecting futures>=2.2.0; python_version < "3.2"
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Processing /home/jenkins/.cache/pip/wheels/91/95/75/19c98a91239878abbc7c59970abd3b4e0438a7dd5b61778335/scandir-1.10.0-cp27-cp27mu-linux_x86_64.whl
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Installing collected packages: six, filelock, distlib, scandir, pathlib2, singledispatch,
contextlib2, zipp, configparser, importlib-metadata, typing, importlib-resources, appdirs,
virtualenv, pluggy, py, toml, tox, enum34, futures, grpcio, protobuf, grpcio-tools, future,
mypy-protobuf
Successfully installed appdirs-1.4.3 configparser-4.0.2 contextlib2-0.6.0.post1 distlib-0.3.0
enum34-1.1.10 filelock-3.0.12 future-0.16.0 futures-3.3.0 grpcio-1.27.2 grpcio-tools-1.14.2
importlib-metadata-1.5.0 importlib-resources-1.3.1 mypy-protobuf-1.18 pathlib2-2.3.5 pluggy-0.13.1
protobuf-3.11.3 py-1.8.1 scandir-1.10.0 singledispatch-3.4.0.3 six-1.14.0 toml-0.10.0 tox-3.11.1
typing-3.7.4.1 virtualenv-20.0.10 zipp-1.2.0

> Task :sdks:python:test-suites:direct:py35:setupVirtualenv
Using base prefix '/usr'
New python executable in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/bin/python3.5>
Also creating executable in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/bin/python>
Installing setuptools, pip, wheel...
done.
Running virtualenv with interpreter /usr/bin/python3.5
Collecting tox==3.11.1
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Collecting grpcio-tools<=1.14.2,>=1.3.5
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Processing /home/jenkins/.cache/pip/wheels/bf/c9/a3/c538d90ef17cf7823fa51fc701a7a7a910a80f6a405bf15b1a/future-0.16.0-cp35-none-any.whl
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Requirement already satisfied, skipping upgrade: setuptools>=30.0.0 in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages>
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Processing /home/jenkins/.cache/pip/wheels/6e/e8/db/c73dae4867666e89ba3cfbc4b5c092446f0e584eda6f409cbb/distlib-0.3.0-cp35-none-any.whl
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Installing collected packages: zipp, importlib-metadata, pluggy, filelock, py, six, distlib,
appdirs, importlib-resources, virtualenv, toml, tox, grpcio, protobuf, grpcio-tools, future,
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Successfully installed appdirs-1.4.3 distlib-0.3.0 filelock-3.0.12 future-0.16.0 grpcio-1.27.2
grpcio-tools-1.14.2 importlib-metadata-1.5.0 importlib-resources-1.3.1 mypy-protobuf-1.18
pluggy-0.13.1 protobuf-3.11.3 py-1.8.1 six-1.14.0 toml-0.10.0 tox-3.11.1 virtualenv-20.0.10
zipp-1.2.0

> Task :sdks:python:test-suites:direct:py2:mongodbioIT FAILED
Using default tag: latest
latest: Pulling from library/mongo
Digest: sha256:66e7d52ef48b18e54e7639c1ab3cd3ff00ecf338ad51c1acd67d613880d4a59f
Status: Image is up to date for mongo:latest
docker: Error response from daemon: Conflict. The container name "/mongoioit27461" is already
in use by container "fe0dbf2eb2b2b6b034d45204015935a994664952989626197dd37f40abf38a7c". You
have to remove (or rename) that container to be able to reuse that name.
See 'docker run --help'.

> Task :sdks:python:test-suites:direct:py35:mongodbioIT
Using default tag: latest
latest: Pulling from library/mongo
Digest: sha256:66e7d52ef48b18e54e7639c1ab3cd3ff00ecf338ad51c1acd67d613880d4a59f
Status: Image is up to date for mongo:latest
06947bcce4dbb1a5d69aeae903fc8a1353794614b3ee663f444a90e2cae46afc
Obtaining file://<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python>
Processing /home/jenkins/.cache/pip/wheels/50/24/4d/4580ca4a299f1ad6fd63443e6e584cb21e9a07988e4aa8daac/crcmod-1.7-cp35-cp35m-linux_x86_64.whl
Processing /home/jenkins/.cache/pip/wheels/59/b1/91/f02e76c732915c4015ab4010f3015469866c1eb9b14058d8e7/dill-0.3.1.1-cp35-none-any.whl
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Processing /home/jenkins/.cache/pip/wheels/48/f7/87/b932f09c6335dbcf45d916937105a372ab14f353a9ca431d7d/oauth2client-3.0.0-cp35-none-any.whl
Requirement already satisfied: protobuf<4,>=3.5.0.post1 in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages>
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Processing /home/jenkins/.cache/pip/wheels/de/f4/b9/d6546ebbb81a0b7c261c73b4a831a285cc47184821aa2e6e8e/avro_python3-1.9.2.1-py3-none-any.whl
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Processing /home/jenkins/.cache/pip/wheels/9b/04/dd/7daf4150b6d9b12949298737de9431a324d4b797ffd63f526e/docopt-0.6.2-py2.py3-none-any.whl
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(from pytest<5.0,>=4.4.0->apache-beam==2.21.0.dev0) (1.8.1)
Requirement already satisfied: pluggy<1.0,>=0.12 in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages>
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Requirement already satisfied: zipp>=0.5 in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages>
(from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.21.0.dev0)
(1.2.0)
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Installing collected packages: crcmod, dill, fastavro, idna, urllib3, certifi, chardet, requests,
docopt, hdfs, httplib2, pbr, mock, numpy, pymongo, pyasn1, rsa, pyasn1-modules, oauth2client,
pyparsing, pydot, python-dateutil, pytz, typing-extensions, typing, avro-python3, pyarrow,
freezegun, nose, nose-xunitmp, pandas, parameterized, pyhamcrest, pyyaml, requests-mock, tenacity,
atomicwrites, wcwidth, attrs, packaging, pathlib2, more-itertools, pytest, apipkg, execnet,
pytest-forked, pytest-xdist, pytest-timeout, apache-beam
  Running setup.py develop for apache-beam
Successfully installed apache-beam apipkg-1.5 atomicwrites-1.3.0 attrs-19.3.0 avro-python3-1.9.2.1
certifi-2019.11.28 chardet-3.0.4 crcmod-1.7 dill-0.3.1.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.21.24
freezegun-0.3.15 hdfs-2.5.8 httplib2-0.12.0 idna-2.9 mock-2.0.0 more-itertools-8.2.0 nose-1.3.7
nose-xunitmp-0.4.1 numpy-1.18.2 oauth2client-3.0.0 packaging-20.3 pandas-0.24.2 parameterized-0.7.1
pathlib2-2.3.5 pbr-5.4.4 pyarrow-0.15.1 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1 pyhamcrest-1.10.1
pymongo-3.10.1 pyparsing-2.4.6 pytest-4.6.9 pytest-forked-1.1.3 pytest-timeout-1.3.4 pytest-xdist-1.31.0
python-dateutil-2.8.1 pytz-2019.3 pyyaml-5.3 requests-2.23.0 requests-mock-1.7.0 rsa-4.0 tenacity-5.1.5
typing-3.7.4.1 typing-extensions-3.7.4.1 urllib3-1.25.8 wcwidth-0.1.8
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:__main__:Writing 100000 documents to mongodb
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:82:
FutureWarning: WriteToMongoDB is experimental.
  known_args.batch_size))
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
annotate_downstream_side_inputs at 0x7f3aab196378> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
fix_side_input_pcoll_coders at 0x7f3aab196488> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
lift_combiners at 0x7f3aab196510> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
expand_sdf at 0x7f3aab196598> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
expand_gbk at 0x7f3aab196620> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
sink_flattens at 0x7f3aab196730> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
greedily_fuse at 0x7f3aab1967b8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
read_to_impulse at 0x7f3aab196840> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
impulse_to_input at 0x7f3aab1968c8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
inject_timer_pcollections at 0x7f3aab196a60> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
sort_stages at 0x7f3aab196ae8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
window_pcollection_coders at 0x7f3aab196b70> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner:Created Worker handler <apache_beam.runners.portability.fn_api_runner.EmbeddedWorkerHandler
object at 0x7f3aab2096d8> for environment urn: "beam:env:embedded_python:v1"

INFO:apache_beam.runners.portability.fn_api_runner:Running ((ref_AppliedPTransform_Create/Impulse_3)+(ref_AppliedPTransform_Create/FlatMap(<lambda
at core.py:2643>)_4))+((((ref_AppliedPTransform_Create/Map(decode)_6)+((ref_AppliedPTransform_Create
documents_7)+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_GenerateObjectIdFn)_9)))+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/AddRandomKeys_11)+(ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/Map(reify_timestamps)_13)))+(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Write))
INFO:apache_beam.runners.portability.fn_api_runner:Running ((WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Read)+(ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/FlatMap(restore_timestamps)_18))+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/RemoveRandomKeys_19)+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_WriteMongoFn)_20))
INFO:__main__:Writing 100000 documents to mongodb finished in 80.621 seconds
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:__main__:Reading from mongodb beam_mongodbio_it_db:integration_test_1584553949
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:101:
FutureWarning: ReadFromMongoDB is experimental.
  | 'Combine' >> beam.CombineGlobally(sum))
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
annotate_downstream_side_inputs at 0x7f3aab196378> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
fix_side_input_pcoll_coders at 0x7f3aab196488> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
lift_combiners at 0x7f3aab196510> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
expand_sdf at 0x7f3aab196598> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
expand_gbk at 0x7f3aab196620> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
sink_flattens at 0x7f3aab196730> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
greedily_fuse at 0x7f3aab1967b8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
read_to_impulse at 0x7f3aab196840> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
impulse_to_input at 0x7f3aab1968c8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
inject_timer_pcollections at 0x7f3aab196a60> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
sort_stages at 0x7f3aab196ae8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function
window_pcollection_coders at 0x7f3aab196b70> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner:Created Worker handler <apache_beam.runners.portability.fn_api_runner.EmbeddedWorkerHandler
object at 0x7f3a88914630> for environment urn: "beam:env:embedded_python:v1"

INFO:apache_beam.runners.portability.fn_api_runner:Running ((ref_AppliedPTransform_ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/Impulse_5)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction))+((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/SplitAndSizeRestriction)+(ref_PCollection_PCollection_1_split/Write))
INFO:apache_beam.runners.portability.fn_api_runner:Running ((ref_PCollection_PCollection_1_split/Read)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/Process))+(((ref_AppliedPTransform_Map_7)+((ref_AppliedPTransform_Combine/KeyWithVoid_9)+(Combine/CombinePerKey/Precombine)))+(Combine/CombinePerKey/Group/Write))
INFO:apache_beam.runners.portability.fn_api_runner:Running ((Combine/CombinePerKey/Group/Read)+((Combine/CombinePerKey/Merge)+(Combine/CombinePerKey/ExtractOutputs)))+((ref_AppliedPTransform_Combine/UnKey_17)+(ref_PCollection_PCollection_9/Write))
INFO:apache_beam.runners.portability.fn_api_runner:Running ((ref_AppliedPTransform_Combine/DoOnce/Impulse_19)+(((ref_AppliedPTransform_Combine/DoOnce/FlatMap(<lambda
at core.py:2643>)_20)+(ref_AppliedPTransform_Combine/DoOnce/Map(decode)_22))+(ref_AppliedPTransform_Combine/InjectDefault_23)))+(((ref_AppliedPTransform_assert_that/WindowInto(WindowIntoFn)_30)+(((ref_AppliedPTransform_assert_that/ToVoidKey_31)+(ref_AppliedPTransform_assert_that/Group/pair_with_1_34))+(assert_that/Group/Flatten/Transcode/1)))+(assert_that/Group/Flatten/Write/1))
INFO:apache_beam.runners.portability.fn_api_runner:Running (ref_AppliedPTransform_assert_that/Create/Impulse_26)+((((ref_AppliedPTransform_assert_that/Create/FlatMap(<lambda
at core.py:2643>)_27)+(ref_AppliedPTransform_assert_that/Create/Map(decode)_29))+(ref_AppliedPTransform_assert_that/Group/pair_with_0_33))+((assert_that/Group/Flatten/Transcode/0)+(assert_that/Group/Flatten/Write/0)))
INFO:apache_beam.runners.portability.fn_api_runner:Running (assert_that/Group/Flatten/Read)+(assert_that/Group/GroupByKey/Write)
INFO:apache_beam.runners.portability.fn_api_runner:Running (assert_that/Group/GroupByKey/Read)+(((ref_AppliedPTransform_assert_that/Group/Map(_merge_tagged_vals_under_key)_40)+(ref_AppliedPTransform_assert_that/Unkey_41))+(ref_AppliedPTransform_assert_that/Match_42))
INFO:__main__:Read 100000 documents from mongodb finished in 6.705 seconds
mongoioit27043
mongoioit27043

FAILURE: Build failed with an exception.

* Where:
Build file '<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/test-suites/direct/py2/build.gradle'>
line: 101

* What went wrong:
Execution failed for task ':sdks:python:test-suites:direct:py2:mongodbioIT'.
> Process 'command 'sh'' finished with non-zero exit value 125

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to
get more log output. Run with --scan to get full insights.

* Get more help at https://help.gradle.org

Deprecated Gradle features were used in this build, making it incompatible with Gradle 6.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/5.2.1/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 2m 29s
4 actionable tasks: 4 executed

Publishing build scan...
https://gradle.com/s/7m3hmcq76ecja

Build step 'Invoke Gradle script' changed build result to FAILURE
Build step 'Invoke Gradle script' marked build as failure

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