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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: beam_PostCommit_Python2 #359
Date Sun, 01 Sep 2019 06:09:37 GMT
See <https://builds.apache.org/job/beam_PostCommit_Python2/359/display/redirect>

------------------------------------------
[...truncated 290.16 KB...]
test_1      | DEBUG	http://namenode:50070 "PUT /webhdfs/v1/kinglear.txt?user.name=root&overwrite=True&op=CREATE
HTTP/1.1" 307 0
test_1      | DEBUG	Starting new HTTP connection (1): datanode:50075
datanode_1  | 19/09/01 06:07:33 INFO datanode.webhdfs: 192.168.32.4 PUT /webhdfs/v1/kinglear.txt?op=CREATE&user.name=root&namenoderpcaddress=namenode:8020&createflag=&createparent=true&overwrite=true&user.name=root
201
namenode_1  | 19/09/01 06:07:33 INFO hdfs.StateChange: BLOCK* allocate blk_1073741825_1001,
replicas=192.168.32.3:50010 for /kinglear.txt
datanode_1  | 19/09/01 06:07:33 INFO datanode.DataNode: Receiving BP-1353722456-192.168.32.2-1567318003360:blk_1073741825_1001
src: /192.168.32.3:33424 dest: /192.168.32.3:50010
datanode_1  | 19/09/01 06:07:33 INFO DataNode.clienttrace: src: /192.168.32.3:33424, dest:
/192.168.32.3:50010, bytes: 157283, op: HDFS_WRITE, cliID: DFSClient_NONMAPREDUCE_1090238628_67,
offset: 0, srvID: 45c69abc-9d5b-4746-aff5-14767f707484, blockid: BP-1353722456-192.168.32.2-1567318003360:blk_1073741825_1001,
duration: 15488832
datanode_1  | 19/09/01 06:07:33 INFO datanode.DataNode: PacketResponder: BP-1353722456-192.168.32.2-1567318003360:blk_1073741825_1001,
type=LAST_IN_PIPELINE terminating
namenode_1  | 19/09/01 06:07:34 INFO namenode.FSNamesystem: BLOCK* blk_1073741825_1001 is
COMMITTED but not COMPLETE(numNodes= 0 <  minimum = 1) in file /kinglear.txt
namenode_1  | 19/09/01 06:07:34 INFO namenode.EditLogFileOutputStream: Nothing to flush
namenode_1  | 19/09/01 06:07:34 INFO hdfs.StateChange: DIR* completeFile: /kinglear.txt is
closed by DFSClient_NONMAPREDUCE_1090238628_67
test_1      | DEBUG	Upload of 'kinglear.txt' to '/kinglear.txt' complete.
test_1      | INFO:root:Missing pipeline option (runner). Executing pipeline using the default
runner: DirectRunner.
test_1      | INFO:root:==================== <function annotate_downstream_side_inputs
at 0x7fa074acb398> ====================
test_1      | INFO:root:==================== <function fix_side_input_pcoll_coders at 0x7fa074acb488>
====================
test_1      | INFO:root:==================== <function lift_combiners at 0x7fa074acb500>
====================
test_1      | INFO:root:==================== <function expand_sdf at 0x7fa074acb578>
====================
test_1      | INFO:root:==================== <function expand_gbk at 0x7fa074acb5f0>
====================
test_1      | INFO:root:==================== <function sink_flattens at 0x7fa074acb6e0>
====================
test_1      | INFO:root:==================== <function greedily_fuse at 0x7fa074acb758>
====================
test_1      | INFO:root:==================== <function read_to_impulse at 0x7fa074acb7d0>
====================
test_1      | INFO:root:==================== <function impulse_to_input at 0x7fa074acb848>
====================
test_1      | INFO:root:==================== <function inject_timer_pcollections at 0x7fa074acb9b0>
====================
test_1      | INFO:root:==================== <function sort_stages at 0x7fa074acba28>
====================
test_1      | INFO:root:==================== <function window_pcollection_coders at 0x7fa074acbaa0>
====================
test_1      | INFO:root:Running (ref_AppliedPTransform_read/Read_3)+((ref_AppliedPTransform_split_4)+((ref_AppliedPTransform_pair_with_one_5)+(group/Write)))
datanode_1  | 19/09/01 06:07:37 INFO datanode.webhdfs: 192.168.32.4 GET /webhdfs/v1/kinglear.txt?op=OPEN&user.name=root&namenoderpcaddress=namenode:8020&length=157284&offset=0
200
test_1      | INFO:root:Running (((ref_AppliedPTransform_write/Write/WriteImpl/DoOnce/Read_16)+(ref_AppliedPTransform_write/Write/WriteImpl/InitializeWrite_17))+(ref_PCollection_PCollection_9/Write))+(ref_PCollection_PCollection_10/Write)
test_1      | INFO:root:Running (((group/Read)+((ref_AppliedPTransform_count_10)+(ref_AppliedPTransform_format_11)))+(ref_AppliedPTransform_write/Write/WriteImpl/WriteBundles_18))+((ref_AppliedPTransform_write/Write/WriteImpl/Pair_19)+((ref_AppliedPTransform_write/Write/WriteImpl/WindowInto(WindowIntoFn)_20)+(write/Write/WriteImpl/GroupByKey/Write)))
test_1      | WARNING:root:Mime types are not supported. Got non-default mime_type: text/plain
datanode_1  | 19/09/01 06:07:40 INFO datanode.webhdfs: 192.168.32.4 PUT /webhdfs/v1/beam-temp-py-wordcount-integration-cd81b920cc7e11e9b3640242c0a82004/0bf77893-e651-492c-8cc9-ffd713e47431.py-wordcount-integration?op=CREATE&user.name=root&namenoderpcaddress=namenode:8020&createflag=&createparent=true&overwrite=false&user.name=root
201
namenode_1  | 19/09/01 06:07:40 INFO hdfs.StateChange: BLOCK* allocate blk_1073741826_1002,
replicas=192.168.32.3:50010 for /beam-temp-py-wordcount-integration-cd81b920cc7e11e9b3640242c0a82004/0bf77893-e651-492c-8cc9-ffd713e47431.py-wordcount-integration
datanode_1  | 19/09/01 06:07:40 INFO datanode.DataNode: Receiving BP-1353722456-192.168.32.2-1567318003360:blk_1073741826_1002
src: /192.168.32.3:33448 dest: /192.168.32.3:50010
datanode_1  | 19/09/01 06:07:40 INFO DataNode.clienttrace: src: /192.168.32.3:33448, dest:
/192.168.32.3:50010, bytes: 48944, op: HDFS_WRITE, cliID: DFSClient_NONMAPREDUCE_-939851178_69,
offset: 0, srvID: 45c69abc-9d5b-4746-aff5-14767f707484, blockid: BP-1353722456-192.168.32.2-1567318003360:blk_1073741826_1002,
duration: 3700375
datanode_1  | 19/09/01 06:07:40 INFO datanode.DataNode: PacketResponder: BP-1353722456-192.168.32.2-1567318003360:blk_1073741826_1002,
type=LAST_IN_PIPELINE terminating
namenode_1  | 19/09/01 06:07:40 INFO hdfs.StateChange: DIR* completeFile: /beam-temp-py-wordcount-integration-cd81b920cc7e11e9b3640242c0a82004/0bf77893-e651-492c-8cc9-ffd713e47431.py-wordcount-integration
is closed by DFSClient_NONMAPREDUCE_-939851178_69
test_1      | INFO:root:Running (write/Write/WriteImpl/GroupByKey/Read)+((ref_AppliedPTransform_write/Write/WriteImpl/Extract_25)+(ref_PCollection_PCollection_17/Write))
test_1      | INFO:root:Running ((ref_PCollection_PCollection_9/Read)+(ref_AppliedPTransform_write/Write/WriteImpl/PreFinalize_26))+(ref_PCollection_PCollection_18/Write)
test_1      | INFO:root:Running (ref_PCollection_PCollection_9/Read)+(ref_AppliedPTransform_write/Write/WriteImpl/FinalizeWrite_27)
test_1      | INFO:root:Starting finalize_write threads with num_shards: 1 (skipped: 0), batches:
1, num_threads: 1
test_1      | INFO:root:Renamed 1 shards in 0.14 seconds.
test_1      | INFO:root:number of empty lines: 1663
test_1      | INFO:root:average word length: 4
hdfs_it-jenkins-beam_postcommit_python2-359_test_1 exited with code 0
Stopping hdfs_it-jenkins-beam_postcommit_python2-359_datanode_1 ... 
Stopping hdfs_it-jenkins-beam_postcommit_python2-359_namenode_1 ... 
Stopping hdfs_it-jenkins-beam_postcommit_python2-359_datanode_1 ... done
Stopping hdfs_it-jenkins-beam_postcommit_python2-359_namenode_1 ... done
Aborting on container exit...

real	1m37.339s
user	0m1.153s
sys	0m0.175s
+ finally
+ docker-compose -p hdfs_IT-jenkins-beam_PostCommit_Python2-359 --no-ansi down
Removing hdfs_it-jenkins-beam_postcommit_python2-359_test_1     ... 
Removing hdfs_it-jenkins-beam_postcommit_python2-359_datanode_1 ... 
Removing hdfs_it-jenkins-beam_postcommit_python2-359_namenode_1 ... 
Removing hdfs_it-jenkins-beam_postcommit_python2-359_datanode_1 ... done
Removing hdfs_it-jenkins-beam_postcommit_python2-359_namenode_1 ... done
Removing hdfs_it-jenkins-beam_postcommit_python2-359_test_1     ... done
Removing network hdfs_it-jenkins-beam_postcommit_python2-359_test_net

real	0m0.802s
user	0m0.574s
sys	0m0.120s

> Task :sdks:python:test-suites:direct:py2:mongodbioIT
Using default tag: latest
latest: Pulling from library/mongo
35c102085707: Pulling fs layer
251f5509d51d: Pulling fs layer
8e829fe70a46: Pulling fs layer
6001e1789921: Pulling fs layer
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c73353d62de1: Pulling fs layer
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76be8dc9ea13: Waiting
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6001e1789921: Waiting
24c524d289d7: Pulling fs layer
c73353d62de1: Waiting
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306b575ddfff: Pulling fs layer
62fb80b8f88c: Waiting
87b9bd03dc66: Waiting
ee1475733b36: Pulling fs layer
306b575ddfff: Waiting
ee1475733b36: Waiting
251f5509d51d: Verifying Checksum
251f5509d51d: Download complete
8e829fe70a46: Verifying Checksum
8e829fe70a46: Download complete
35c102085707: Verifying Checksum
35c102085707: Download complete
6001e1789921: Verifying Checksum
6001e1789921: Download complete
62fb80b8f88c: Verifying Checksum
76be8dc9ea13: Verifying Checksum
76be8dc9ea13: Download complete
9dfe7c37b46c: Verifying Checksum
9dfe7c37b46c: Download complete
c73353d62de1: Verifying Checksum
c73353d62de1: Download complete
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87b9bd03dc66: Verifying Checksum
87b9bd03dc66: Download complete
ee1475733b36: Verifying Checksum
ee1475733b36: Download complete
306b575ddfff: Verifying Checksum
306b575ddfff: Download complete
35c102085707: Pull complete
251f5509d51d: Pull complete
8e829fe70a46: Pull complete
6001e1789921: Pull complete
24c524d289d7: Verifying Checksum
24c524d289d7: Download complete
62fb80b8f88c: Pull complete
76be8dc9ea13: Pull complete
c73353d62de1: Pull complete
9dfe7c37b46c: Pull complete
1fdf813927b6: Pull complete
87b9bd03dc66: Pull complete
24c524d289d7: Pull complete
306b575ddfff: Pull complete
ee1475733b36: Pull complete
Digest: sha256:93c98ffc714faa1fa501297d35670a62835dbb7e62243cee0c491433ea523f30
Status: Downloaded newer image for mongo:latest
94369352cb510ca8acd3c93dd84a8787248fc13b1117620d01b83148543d813b
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade
your Python as Python 2.7 won't be maintained after that date. A future version of pip will
drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Obtaining file://<https://builds.apache.org/job/beam_PostCommit_Python2/ws/src/sdks/python>
Requirement already satisfied: crcmod<2.0,>=1.7 in <https://builds.apache.org/job/beam_PostCommit_Python2/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages>
(from apache-beam==2.16.0.dev0) (1.7)
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(from apache-beam==2.16.0.dev0) (0.2.9)
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(from apache-beam==2.16.0.dev0) (0.21.24)
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(from apache-beam==2.16.0.dev0) (2019.2)
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(from apache-beam==2.16.0.dev0) (3.13)
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(from apache-beam==2.16.0.dev0) (1.9.0)
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Requirement already satisfied: chardet<3.1.0,>=3.0.2 in <https://builds.apache.org/job/beam_PostCommit_Python2/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages>
(from requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.16.0.dev0) (3.0.4)
Requirement already satisfied: idna<2.9,>=2.5 in <https://builds.apache.org/job/beam_PostCommit_Python2/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages>
(from requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.16.0.dev0) (2.8)
Installing collected packages: apache-beam
  Found existing installation: apache-beam 2.16.0.dev0
    Not uninstalling apache-beam at <https://builds.apache.org/job/beam_PostCommit_Python2/ws/src/sdks/python,>
outside environment <https://builds.apache.org/job/beam_PostCommit_Python2/ws/src/build/gradleenv/45127155>
    Can't uninstall 'apache-beam'. No files were found to uninstall.
  Running setup.py develop for apache-beam
Successfully installed apache-beam
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:root:Writing 100000 documents to mongodb
<https://builds.apache.org/job/beam_PostCommit_Python2/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:68:
FutureWarning: WriteToMongoDB is experimental.
  known_args.batch_size)
INFO:root:==================== <function annotate_downstream_side_inputs at 0x7ff22f1d6f50>
====================
INFO:root:==================== <function fix_side_input_pcoll_coders at 0x7ff22d64e0c8>
====================
INFO:root:==================== <function lift_combiners at 0x7ff22d64e140> ====================
INFO:root:==================== <function expand_sdf at 0x7ff22d64e1b8> ====================
INFO:root:==================== <function expand_gbk at 0x7ff22d64e230> ====================
INFO:root:==================== <function sink_flattens at 0x7ff22d64e320> ====================
INFO:root:==================== <function greedily_fuse at 0x7ff22d64e398> ====================
INFO:root:==================== <function read_to_impulse at 0x7ff22d64e410> ====================
INFO:root:==================== <function impulse_to_input at 0x7ff22d64e488> ====================
INFO:root:==================== <function inject_timer_pcollections at 0x7ff22d64e5f0>
====================
INFO:root:==================== <function sort_stages at 0x7ff22d64e668> ====================
INFO:root:==================== <function window_pcollection_coders at 0x7ff22d64e6e0>
====================
INFO:root:Running (ref_AppliedPTransform_Create documents/Read_3)+((ref_AppliedPTransform_WriteToMongoDB/ParDo(_GenerateObjectIdFn)_5)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/AddRandomKeys_7)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/Map(reify_timestamps)_9)+(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Write))))
INFO:root:Running ((WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Read)+(ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/FlatMap(restore_timestamps)_14))+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/RemoveRandomKeys_15)+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_WriteMongoFn)_16))
INFO:root:Writing 100000 documents to mongodb finished in 54.843 seconds
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:root:Reading from mongodb beam_mongodbio_it_db:integration_test_1567318096
<https://builds.apache.org/job/beam_PostCommit_Python2/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:83:
FutureWarning: ReadFromMongoDB is experimental.
  | 'Map' >> beam.Map(lambda doc: doc['number'])
INFO:root:==================== <function annotate_downstream_side_inputs at 0x7ff22f1d6f50>
====================
INFO:root:==================== <function fix_side_input_pcoll_coders at 0x7ff22d64e0c8>
====================
INFO:root:==================== <function lift_combiners at 0x7ff22d64e140> ====================
INFO:root:==================== <function expand_sdf at 0x7ff22d64e1b8> ====================
INFO:root:==================== <function expand_gbk at 0x7ff22d64e230> ====================
INFO:root:==================== <function sink_flattens at 0x7ff22d64e320> ====================
INFO:root:==================== <function greedily_fuse at 0x7ff22d64e398> ====================
INFO:root:==================== <function read_to_impulse at 0x7ff22d64e410> ====================
INFO:root:==================== <function impulse_to_input at 0x7ff22d64e488> ====================
INFO:root:==================== <function inject_timer_pcollections at 0x7ff22d64e5f0>
====================
INFO:root:==================== <function sort_stages at 0x7ff22d64e668> ====================
INFO:root:==================== <function window_pcollection_coders at 0x7ff22d64e6e0>
====================
INFO:root:Running ((ref_AppliedPTransform_assert_that/Create/Read_7)+((ref_AppliedPTransform_assert_that/Group/pair_with_0_11)+(assert_that/Group/Flatten/Transcode/0)))+(assert_that/Group/Flatten/Write/0)
INFO:root:Running ((ref_AppliedPTransform_ReadFromMongoDB/Read_3)+((ref_AppliedPTransform_Map_4)+((ref_AppliedPTransform_assert_that/WindowInto(WindowIntoFn)_8)+((ref_AppliedPTransform_assert_that/ToVoidKey_9)+((ref_AppliedPTransform_assert_that/Group/pair_with_1_12)+(assert_that/Group/Flatten/Transcode/1))))))+(assert_that/Group/Flatten/Write/1)
INFO:root:Running (assert_that/Group/Flatten/Read)+(assert_that/Group/GroupByKey/Write)
INFO:root:Running (assert_that/Group/GroupByKey/Read)+((ref_AppliedPTransform_assert_that/Group/Map(_merge_tagged_vals_under_key)_18)+((ref_AppliedPTransform_assert_that/Unkey_19)+(ref_AppliedPTransform_assert_that/Match_20)))
INFO:root:Read 100000 documents from mongodb finished in 21.681 seconds
mongoioit27347
mongoioit27347

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':sdks:python:setupVirtualenv'.
> Process 'command 'sh'' finished with non-zero exit value 1

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to
get more log output. Run with --scan to get full insights.

* Get more help at https://help.gradle.org

Deprecated Gradle features were used in this build, making it incompatible with Gradle 6.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/5.2.1/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 7m 3s
103 actionable tasks: 78 executed, 22 from cache, 3 up-to-date

Publishing build scan...
https://gradle.com/s/vduic5rx5pfpk

Build step 'Invoke Gradle script' changed build result to FAILURE
Build step 'Invoke Gradle script' marked build as failure

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