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From "Hudson (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (AMBARI-15282) Accumulo Service Check fails due to timeout after deployment
Date Thu, 03 Mar 2016 14:14:18 GMT

    [ https://issues.apache.org/jira/browse/AMBARI-15282?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15177850#comment-15177850
] 

Hudson commented on AMBARI-15282:
---------------------------------

FAILURE: Integrated in Ambari-branch-2.2 #460 (See [https://builds.apache.org/job/Ambari-branch-2.2/460/])
AMBARI-15282. Accumulo Service Check fails due to timeout after (aonishuk: [http://git-wip-us.apache.org/repos/asf?p=ambari.git&a=commit&h=58fb6839f9dac923c59b8b4fa663a15060dc65c2])
* ambari-server/src/main/resources/common-services/ACCUMULO/1.6.1.2.2.0/package/scripts/service_check.py


> Accumulo Service Check fails due to timeout after deployment
> ------------------------------------------------------------
>
>                 Key: AMBARI-15282
>                 URL: https://issues.apache.org/jira/browse/AMBARI-15282
>             Project: Ambari
>          Issue Type: Bug
>            Reporter: Andrew Onischuk
>            Assignee: Andrew Onischuk
>             Fix For: 2.2.2
>
>         Attachments: AMBARI-15282.patch
>
>
> After deployment accumulo service check is failing with the below error.
>     
>     
>     
>     {
>       "href" : "https://172.22.118.198:8443/api/v1/clusters/cl1/requests/5/tasks/188",
>       "Tasks" : {
>         "attempt_cnt" : 1,
>         "cluster_name" : "cl1",
>         "command" : "SERVICE_CHECK",
>         "command_detail" : "SERVICE_CHECK ACCUMULO",
>         "end_time" : 1456880285591,
>         "error_log" : "/var/lib/ambari-agent/data/errors-188.txt",
>         "exit_code" : 1,
>         "host_name" : "os-r6-ucmvau-ambari-us-21nf-3-5.novalocal",
>         "id" : 188,
>         "output_log" : "/var/lib/ambari-agent/data/output-188.txt",
>         "request_id" : 5,
>         "role" : "ACCUMULO_SERVICE_CHECK",
>         "stage_id" : 5,
>         "start_time" : 1456880242827,
>         "status" : "FAILED",
>         "stderr" : "Traceback (most recent call last):\n  File \"/var/lib/ambari-agent/cache/common-services/ACCUMULO/1.6.1.2.2.0/package/scripts/service_check.py\",
line 64, in <module>\n    AccumuloServiceCheck().execute()\n  File \"/usr/lib/python2.6/site-packages/resource_management/libraries/script/script.py\",
line 219, in execute\n    method(env)\n  File \"/var/lib/ambari-agent/cache/common-services/ACCUMULO/1.6.1.2.2.0/package/scripts/service_check.py\",
line 53, in service_check\n    logoutput=True)\n  File \"/usr/lib/python2.6/site-packages/resource_management/core/base.py\",
line 154, in __init__\n    self.env.run()\n  File \"/usr/lib/python2.6/site-packages/resource_management/core/environment.py\",
line 158, in run\n    self.run_action(resource, action)\n  File \"/usr/lib/python2.6/site-packages/resource_management/core/environment.py\",
line 121, in run_action\n    provider_action()\n  File \"/usr/lib/python2.6/site-packages/resource_management/core/providers/system.py\",
line 238, in action_run\n    tries=self.resource.tries, try_sleep=self.resource.try_sleep)\n
 File \"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\", line 70, in
inner\n    result = function(command, **kwargs)\n  File \"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\",
line 92, in checked_call\n    tries=tries, try_sleep=try_sleep)\n  File \"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\",
line 140, in _call_wrapper\n    result = _call(command, **kwargs_copy)\n  File \"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\",
line 285, in _call\n    raise ExecuteTimeoutException(err_msg)\nresource_management.core.exceptions.ExecuteTimeoutException:
Execution of 'ambari-sudo.sh su ambari-qa -l -s /bin/bash -c 'export  PATH='\"'\"'/usr/sbin:/sbin:/usr/lib/ambari-server/*:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/agentslava/bin:/var/lib/ambari-agent'\"'\"'
; /usr/hdp/current/accumulo-client/bin/accumulo shell -u ambari-qa -p smoke -f /var/lib/ambari-agent/tmp/cmds''
was killed due timeout after 30 seconds",
>         "stdout" : "2016-03-02 00:57:33,504 - Using hadoop conf dir: /usr/hdp/current/hadoop-client/conf\n2016-03-02
00:57:33,512 - File['/var/lib/ambari-agent/tmp/cmds'] {'content': InlineTemplate(...), 'owner':
'ambari-qa', 'group': 'hadoop', 'mode': 0600}\n2016-03-02 00:57:33,578 - Writing File['/var/lib/ambari-agent/tmp/cmds']
because it doesn't exist\n2016-03-02 00:57:33,627 - Changing owner for /var/lib/ambari-agent/tmp/cmds
from 0 to ambari-qa\n2016-03-02 00:57:33,628 - Changing group for /var/lib/ambari-agent/tmp/cmds
from 0 to hadoop\n2016-03-02 00:57:33,667 - Changing permission for /var/lib/ambari-agent/tmp/cmds
from 640 to 600\n2016-03-02 00:57:33,689 - Execute['/usr/hdp/current/accumulo-client/bin/accumulo
shell -u ambari-qa -p smoke -f /var/lib/ambari-agent/tmp/cmds'] {'logoutput': True, 'user':
'ambari-qa', 'timeout': 30}\n######## Hortonworks #############\nThis is MOTD message, added
for testing in qe infra\n2016-03-02 00:57:36,175 [trace.DistributedTrace] INFO : SpanReceiver
org.apache.accumulo.tracer.ZooTraceClient was loaded successfully.\nrow cf:cq []    val\n2016-03-02
00:57:38,606 [shell.Shell] INFO : Flush of table testtable completed.\nrow cf:cq []    val",
>         "structured_out" : { }
>       }
>     
> This issue is intermittent and is not reproduced in all the runs  
> Noticed the below in accumulo logs
>     
>     
>     
>     2016-03-02 01:07:51,101 [tserver.TabletServer] INFO : Waiting for tablet server lock
>     2016-03-02 01:07:52,654 [tserver.TabletServer] WARN : Got getScans message from master
before lock acquired, ignoring...
>     2016-03-02 01:07:52,659 [tserver.TabletServer$ThriftClientHandler] ERROR: Lock not
acquired
>     java.lang.RuntimeException: Lock not acquired
>     	at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
>     	at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
>     	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>     	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>     	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>     	at java.lang.reflect.Method.invoke(Method.java:497)
>     	at org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
>     	at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
>     	at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
>     	at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>     	at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>     	at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
>     	at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
>     	at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
>     	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>     	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>     	at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
>     	at java.lang.Thread.run(Thread.java:745)
>     2016-03-02 01:07:52,668 [thrift.ProcessFunction] ERROR: Internal error processing
getActiveScans
>     org.apache.thrift.TException: Lock not acquired
>     	at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
>     	at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
>     	at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>     	at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>     	at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
>     	at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
>     	at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
>     	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>     	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>     	at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
>     	at java.lang.Thread.run(Thread.java:745)
>     2016-03-02 01:07:56,118 [tserver.TabletServer] INFO : Waiting for tablet server lock
>     2016-03-02 01:07:57,706 [tserver.TabletServer] WARN : Got getScans message from master
before lock acquired, ignoring...
>     2016-03-02 01:07:57,707 [tserver.TabletServer$ThriftClientHandler] ERROR: Lock not
acquired
>     java.lang.RuntimeException: Lock not acquired
>     	at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
>     	at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
>     	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>     	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>     	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>     	at java.lang.reflect.Method.invoke(Method.java:497)
>     	at org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
>     	at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
>     	at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
>     	at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>     	at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>     	at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
>     	at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
>     	at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
>     	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>     	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>     	at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
>     	at java.lang.Thread.run(Thread.java:745)
>     2016-03-02 01:07:57,710 [thrift.ProcessFunction] ERROR: Internal error processing
getActiveScans
>     org.apache.thrift.TException: Lock not acquired
>     	at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
>     	at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
>     	at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>     	at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>     	at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
>     	at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
>     	at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
>     	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>     	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>     	at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
>     	at java.lang.Thread.run(Thread.java:745)
>     2016-03-02 01:08:01,137 [tserver.TabletServer] INFO : Waiting for tablet server lock
>     2016-03-02 01:08:02,730 [tserver.TabletServer] WARN : Got getScans message from master
before lock acquired, ignoring...
>     2016-03-02 01:08:02,731 [tserver.TabletServer$ThriftClientHandler] ERROR: Lock not
acquired
>     java.lang.RuntimeException: Lock not acquired
>     	at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
>     	at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
>     	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>     	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>     	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>     	at java.lang.reflect.Method.invoke(Method.java:497)
>     	at org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
>     	at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
>     	at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
>     	at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>     	at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>     	at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
>     	at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
>     	at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
>     	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>     	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>     	at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
>     	at java.lang.Thread.run(Thread.java:745)
>     2016-03-02 01:08:02,732 [thrift.ProcessFunction] ERROR: Internal error processing
getActiveScans
>     org.apache.thrift.TException: Lock not acquired
>     	at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
>     	at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
>     	at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>     	at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>     	at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
>     	at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
>     	at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
>     	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>     	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>     	at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
>     	at java.lang.Thread.run(Thread.java:745)
>     2016-03-02 01:08:06,162 [tserver.TabletServer] INFO : Waiting for tablet server lock
>     2016-03-02 01:08:07,754 [tserver.TabletServer] WARN : Got getScans message from master
before lock acquired, ignoring...
>     2016-03-02 01:08:07,755 [tserver.TabletServer$ThriftClientHandler] ERROR: Lock not
acquired
>     java.lang.RuntimeException: Lock not acquired
>     	at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
>     	at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
>     	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>     	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>     	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>     	at java.lang.reflect.Method.invoke(Method.java:497)
>     	at org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
>     	at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
>     	at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
>     	at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>     	at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>     	at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
>     	at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
>     	at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
>     	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>     	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>     	at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
>     	at java.lang.Thread.run(Thread.java:745)
>     2016-03-02 01:08:07,759 [thrift.ProcessFunction] ERROR: Internal error processing
getActiveScans
>     org.apache.thrift.TException: Lock not acquired
>     	at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
>     	at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
>     	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
>     	at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>     	at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>     	at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
>     	at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
>     	at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
>     	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>     	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>     	at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
>     	at java.lang.Thread.run(Thread.java:745)
>     2016-03-02 01:08:11,247 [tserver.TabletServer] INFO : Started replication service
on os-r6-ucmvau-ambari-us-21nf-3-5.novalocal:10002
>     2016-03-02 01:17:49,532 [server.Accumulo] WARN : System swappiness setting is greater
than ten (60) which can cause time-sensitive operations to be delayed.  Accumulo is time sensitive
because it needs to maintain distributed lock agreement.
>     
> Please help take a look so that we can avoid this intermittent issues as well.



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