From issues-return-14179-archive-asf-public=cust-asf.ponee.io@airavata.apache.org Fri Jun 15 17:18:06 2018 Return-Path: X-Original-To: archive-asf-public@cust-asf.ponee.io Delivered-To: archive-asf-public@cust-asf.ponee.io Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by mx-eu-01.ponee.io (Postfix) with SMTP id 0FE691807A1 for ; Fri, 15 Jun 2018 17:18:04 +0200 (CEST) Received: (qmail 28091 invoked by uid 500); 15 Jun 2018 15:18:04 -0000 Mailing-List: contact issues-help@airavata.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Delivered-To: mailing list issues@airavata.apache.org Received: (qmail 28082 invoked by uid 99); 15 Jun 2018 15:18:04 -0000 Received: from pnap-us-west-generic-nat.apache.org (HELO spamd4-us-west.apache.org) (209.188.14.142) by apache.org (qpsmtpd/0.29) with ESMTP; Fri, 15 Jun 2018 15:18:04 +0000 Received: from localhost (localhost [127.0.0.1]) by spamd4-us-west.apache.org (ASF Mail Server at spamd4-us-west.apache.org) with ESMTP id A9CF7C02C9 for ; Fri, 15 Jun 2018 15:18:03 +0000 (UTC) X-Virus-Scanned: Debian amavisd-new at spamd4-us-west.apache.org X-Spam-Flag: NO X-Spam-Score: -110.301 X-Spam-Level: X-Spam-Status: No, score=-110.301 tagged_above=-999 required=6.31 tests=[ENV_AND_HDR_SPF_MATCH=-0.5, RCVD_IN_DNSWL_MED=-2.3, SPF_PASS=-0.001, USER_IN_DEF_SPF_WL=-7.5, USER_IN_WHITELIST=-100] autolearn=disabled Received: from mx1-lw-eu.apache.org ([10.40.0.8]) by localhost (spamd4-us-west.apache.org [10.40.0.11]) (amavisd-new, port 10024) with ESMTP id fcjFyofZZpRK for ; Fri, 15 Jun 2018 15:18:02 +0000 (UTC) Received: from mailrelay1-us-west.apache.org (mailrelay1-us-west.apache.org [209.188.14.139]) by mx1-lw-eu.apache.org (ASF Mail Server at mx1-lw-eu.apache.org) with ESMTP id 977325F430 for ; Fri, 15 Jun 2018 15:18:01 +0000 (UTC) Received: from jira-lw-us.apache.org (unknown [207.244.88.139]) by mailrelay1-us-west.apache.org (ASF Mail Server at mailrelay1-us-west.apache.org) with ESMTP id C6FAAE050B for ; Fri, 15 Jun 2018 15:18:00 +0000 (UTC) Received: from jira-lw-us.apache.org (localhost [127.0.0.1]) by jira-lw-us.apache.org (ASF Mail Server at jira-lw-us.apache.org) with ESMTP id 314E62183F for ; Fri, 15 Jun 2018 15:18:00 +0000 (UTC) Date: Fri, 15 Jun 2018 15:18:00 +0000 (UTC) From: "Eroma (JIRA)" To: issues@airavata.apache.org Message-ID: In-Reply-To: References: Subject: [jira] [Created] (AIRAVATA-2833) Several experiments failed at various stages of job submission due to connection lost MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-JIRA-FingerPrint: 30527f35849b9dde25b450d4833f0394 Eroma created AIRAVATA-2833: ------------------------------- Summary: Several experiments failed at various stages of job s= ubmission due to connection lost Key: AIRAVATA-2833 URL: https://issues.apache.org/jira/browse/AIRAVATA-2833 Project: Airavata Issue Type: Bug Components: helix implementation Affects Versions: 0.18 Environment: https://staging.seagrid.org/ Reporter: Eroma Assignee: Dimuthu Upeksha Fix For: 0.18 While submitting a batch of jobs, several failed in a single cluster due to= connection lost. Experiment has failed at uploading input file, output transfer and creating= archive.tar. Error in log [1]. Anything we could do here? Try again? resub= mit the task? =C2=A0 =C2=A0 Exi ID:=C2=A0 SLM001-QEspresso-JS:2_d01e50dd-74fe-434a-87b3-e4668b827da5 SLM001-QEspresso-JS:1_b29c6476-8944-4f6d-8946-b2e9f20b2acf SLM001-QEspresso-JS:0_cd3d980d-017e-4ebe-91f7-85d1157feb94 =C2=A0 [1] org.apache.airavata.helix.impl.task.TaskOnFailException: Error Code : cc1c8= 295-e5ec-44bf-b705-eceddfca3b1a, Task TASK_b6ea333e-7468-4221-8b87-09050d7d= 053c failed due to Failed uploading the input file to /N/SEAGrid_scratch/PR= OCESS_1694a674-3dd7-4693-868e-b74444fd2b8d/ from local path /tmp/PROCESS_16= 94a674-3dd7-4693-868e-b74444fd2b8d/temp_inputs/Al.sample1.in, net.schmizz.s= shj.connection.ConnectionException: [CONNECTION_LOST] Did not receive any k= eep-alive response for 25 seconds at org.apache.airavata.helix.impl.task.Ai= ravataTask.onFail(AiravataTask.java:102) at org.apache.airavata.helix.impl.= task.staging.InputDataStagingTask.onRun(InputDataStagingTask.java:137) at o= rg.apache.airavata.helix.impl.task.AiravataTask.onRun(AiravataTask.java:311= ) at org.apache.airavata.helix.core.AbstractTask.run(AbstractTask.java:90) = at org.apache.helix.task.TaskRunner.run(TaskRunner.java:71) at java.util.co= ncurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.co= ncurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.Schedu= ledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExe= cutor.java:180) at java.util.concurrent.ScheduledThreadPoolExecutor$Schedul= edFutureTask.run(ScheduledThreadPoolExecutor.java:293) at java.util.concurr= ent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util= .concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at j= ava.lang.Thread.run(Thread.java:748) Caused by: org.apache.airavata.agents.= api.AgentException: net.schmizz.sshj.connection.ConnectionException: [CONNE= CTION_LOST] Did not receive any keep-alive response for 25 seconds at org.a= pache.airavata.helix.adaptor.SSHJAgentAdaptor.copyFileTo(SSHJAgentAdaptor.j= ava:155) at org.apache.airavata.helix.impl.task.staging.InputDataStagingTas= k.onRun(InputDataStagingTask.java:119) ... 10 more Caused by: net.schmizz.s= shj.connection.ConnectionException: [CONNECTION_LOST] Did not receive any k= eep-alive response for 25 seconds at net.schmizz.keepalive.KeepAliveRunner.= checkMaxReached(KeepAliveRunner.java:64) at net.schmizz.keepalive.KeepAlive= Runner.doKeepAlive(KeepAliveRunner.java:56) at net.schmizz.keepalive.KeepAl= ive.run(KeepAlive.java:63) -- This message was sent by Atlassian JIRA (v7.6.3#76005)