Return-Path: X-Original-To: apmail-airavata-dev-archive@www.apache.org Delivered-To: apmail-airavata-dev-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id D29581921D for ; Mon, 11 Apr 2016 19:44:30 +0000 (UTC) Received: (qmail 73002 invoked by uid 500); 11 Apr 2016 19:44:30 -0000 Delivered-To: apmail-airavata-dev-archive@airavata.apache.org Received: (qmail 72959 invoked by uid 500); 11 Apr 2016 19:44:30 -0000 Mailing-List: contact dev-help@airavata.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: dev@airavata.apache.org Delivered-To: mailing list dev@airavata.apache.org Received: (qmail 72949 invoked by uid 99); 11 Apr 2016 19:44:30 -0000 Received: from mail-relay.apache.org (HELO mail-relay.apache.org) (140.211.11.15) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 11 Apr 2016 19:44:30 +0000 Received: from 140-182-203-216.dhcp-bl.indiana.edu (140-182-203-216.dhcp-bl.indiana.edu [140.182.203.216]) by mail-relay.apache.org (ASF Mail Server at mail-relay.apache.org) with ESMTPSA id 3578E1A0098 for ; Mon, 11 Apr 2016 19:44:30 +0000 (UTC) From: Suresh Marru Content-Type: multipart/alternative; boundary="Apple-Mail=_3B389A8F-2612-4646-AB13-CDC8DC433331" Message-Id: <0ABEF148-B7E2-425B-85B3-5FDC06E4A1A2@apache.org> Mime-Version: 1.0 (Mac OS X Mail 9.3 \(3124\)) Subject: Re: [GSoC Proposal] In-Situ Simulation Monitoring and Analysis Using Apache Airavata Date: Mon, 11 Apr 2016 15:44:28 -0400 References: To: Airavata Dev In-Reply-To: X-Mailer: Apple Mail (2.3124) --Apple-Mail=_3B389A8F-2612-4646-AB13-CDC8DC433331 Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset=utf-8 Nice work Jeff. Briefly skimming through the code, I see you are writing = the tool from a general sense and not OpenMM specific, great. I was able = to follow your instructions and start the web interface, very slick = indeed.=20 Suresh > On Apr 11, 2016, at 3:12 PM, Jeffery Kinnison = wrote: >=20 > Hi all, >=20 > Sorry for the long silence, my semester hit peak workload about the = same time as the proposal deadline. >=20 > I've written a small POC in Python for parallel data collection and = streaming, available at https://github.com/jeffkinnison/simstream = . The current idea is to spin = up a small server > alongside a job, and within the server to implement a REST API for = retrieving collected data. Currently, event monitoring and handling are = not implemented, but I'm planing on working on that this week.=20 >=20 > Any comments or suggestions would be much appreciated. >=20 > Best, > Jeff K. >=20 > On Fri, Mar 25, 2016 at 12:46 PM, Sandra Gesing > wrote: > Great! >=20 > Best, > Sandra >=20 > = --------------------------------------------------------------------------= ---------------------------------- > Sandra Gesing > Research Assistant Professor, Department of Computer Science and = Engineering > Computational Scientist, Center for Research Computing > University of Notre Dame > http://www3.nd.edu/~sgesing > = --------------------------------------------------------------------------= ---------------------------------- >=20 > On Fri, Mar 25, 2016 at 12:45 PM, Jeffery Kinnison = > = wrote: > Thank you, again, for all of your help. I have submitted the proposal = and will update the wiki to reflect the final version. >=20 > Best, > Jeff K. >=20 > On Fri, Mar 25, 2016 at 12:34 PM, Pierce, Marlon > wrote: > Agreed, looks good. Please update your submission. >=20 > From: Suresh Marru > > Reply-To: "dev@airavata.apache.org " = > > Date: Friday, March 25, 2016 at 12:32 PM > To: Airavata Dev > >=20 > Subject: Re: [GSoC Proposal] In-Situ Simulation Monitoring and = Analysis Using Apache Airavata >=20 > You did a great uplift of the proposal, great job.I suggest submit a = final copy immediately.=20 >=20 > Suresh >=20 >> On Mar 25, 2016, at 12:28 PM, Jeffery Kinnison = > = wrote: >>=20 >> Thank you all for your feedback. I have addressed the many fantastic = suggestions and believe that the proposal is just about complete in = terms of content. >>=20 >> If the team could review the updated proposal, I would much = appreciate it. >>=20 >> = https://docs.google.com/document/d/16BCTV__tA9h2Pnx1annaBIJaU2Jmma1ayTHV6B= NMzNA/edit?usp=3Dsharing = >>=20 >> Best, >> Jeff K. >>=20 >> On Thu, Mar 24, 2016 at 5:47 AM, Sandra Gesing > wrote: >> Hi Jeff, >>=20 >> I think a graphical sketch of the architecture of the services would = be a great addition to your proposal. >>=20 >> Thanks, >> Sandra >>=20 >> = --------------------------------------------------------------------------= ---------------------------------- >> Sandra Gesing >> Research Assistant Professor, Department of Computer Science and = Engineering >> Computational Scientist, Center for Research Computing >> University of Notre Dame >> http://www3.nd.edu/~sgesing >> = --------------------------------------------------------------------------= ---------------------------------- >>=20 >> On Wed, Mar 23, 2016 at 1:50 PM, Miller, Mark > wrote: >> I like this proposal also very much, and agree with what Sandy said = as well. >>=20 >> =20 >>=20 >> Mark >>=20 >> =20 >>=20 >> =C2=A0 <> >> From: Sandra Gesing [mailto:sandra.gesing@nd.edu = ]=20 >> Sent: Tuesday, March 22, 2016 6:12 PM >> To: dev@airavata.apache.org >> Subject: Re: [GSoC Proposal] In-Situ Simulation Monitoring and = Analysis Using Apache Airavata >>=20 >> =20 >>=20 >> Hi Jeff, >>=20 >>=20 >> the proposal looks already excellent. I think it would be beneficial = to have the feature in Airavata that users can directly search for = certain terms in a log file and intermediate results additionally to see = the whole log file and intermediate values. >>=20 >> Thanks, >>=20 >> Sandra >>=20 >>=20 >>=20 >> = --------------------------------------------------------------------------= ---------------------------------- >> Sandra Gesing >>=20 >> Research Assistant Professor, Department of Computer Science and = Engineering >>=20 >> Computational Scientist, Center for Research Computing >>=20 >> University of Notre Dame >> http://www3.nd.edu/~sgesing >> = --------------------------------------------------------------------------= ---------------------------------- >>=20 >> =20 >>=20 >> On Tue, Mar 22, 2016 at 8:03 PM, Jeffery Kinnison = > = wrote: >>=20 >> Hello Dev Team, >>=20 >> I have created a draft of my GSoC proposal and made it available as = at the link below. >>=20 >>=20 >> = https://docs.google.com/document/d/16BCTV__tA9h2Pnx1annaBIJaU2Jmma1ayTHV6B= NMzNA/edit?usp=3Dsharing = >> I would appreciate any comments to improve this proposal. >>=20 >> Best, >>=20 >> Jeff Kinnison >>=20 >> =20 >>=20 >>=20 >>=20 >=20 >=20 >=20 >=20 --Apple-Mail=_3B389A8F-2612-4646-AB13-CDC8DC433331 Content-Transfer-Encoding: quoted-printable Content-Type: text/html; charset=us-ascii Nice work Jeff. Briefly skimming through the code, I see you = are writing the tool from a general sense and not OpenMM specific, = great. I was able to follow your instructions and start the web = interface, very slick indeed. 

Suresh


On Apr 11, 2016, at 3:12 PM, = Jeffery Kinnison <Jeffery.D.Kinnison.1@nd.edu> wrote:

Hi all,

Sorry for the long silence, my semester hit peak = workload about the same time as the proposal deadline.

I've written a small POC in Python for parallel data = collection and streaming, available at https://github.com/jeffkinnison/simstream. The current = idea is to spin up a small server
 alongside a = job, and within the server to implement a REST API for retrieving = collected data. Currently, event monitoring and handling are not = implemented, but I'm planing on working on that this week.

Any comments or suggestions would be = much appreciated.

Best,
Jeff K.

On Fri, = Mar 25, 2016 at 12:46 PM, Sandra Gesing <sandra.gesing@nd.edu> wrote:
Great!

Best,
Sandra

---------------------------------------------------------------= ---------------------------------------------
Sandra = Gesing
Research Assistant Professor, Department of = Computer Science and Engineering
Computational = Scientist, Center for Research Computing
University = of Notre Dame
http://www3.nd.edu/~sgesing
---------------------------------------------------------------= ---------------------------------------------

On Fri, Mar 25, 2016 at 12:45 PM, Jeffery Kinnison = <Jeffery.D.Kinnison.1@nd.edu> wrote:
Thank you, again, for all of = your help. I have submitted the proposal and will update the wiki to = reflect the final version.

Best,
Jeff K.

On Fri, Mar 25, 2016 at 12:34 PM, Pierce, Marlon = <marpierc@iu.edu> wrote:
Agreed, looks good. Please update your submission.

From: Suresh Marru = <smarru@apache.org>
Reply-To: "dev@airavata.apache.org" <dev@airavata.apache.org>
Date: Friday, March = 25, 2016 at 12:32 PM
To: Airavata Dev = <dev@airavata.apache.org>

Subject: Re: [GSoC = Proposal] In-Situ Simulation Monitoring and Analysis Using Apache = Airavata

You did a great uplift of the proposal, great job.I suggest submit a = final copy immediately. 

Suresh

On Mar 25, 2016, at 12:28 PM, Jeffery Kinnison <Jeffery.D.Kinnison.1@nd.edu> wrote:

Thank you all for your feedback. I have addressed the = many fantastic suggestions and believe that the proposal is just about = complete in terms of content.

If the team could review the updated proposal, I would = much appreciate it.

https://docs.google.com/document/d/16BCTV__tA9h2Pnx1annaBIJaU2J= mma1ayTHV6BNMzNA/edit?usp=3Dsharing

Best,
Jeff K.

On Thu, Mar 24, 2016 at 5:47 AM, Sandra = Gesing <sandra.gesing@nd.edu> wrote:
Hi Jeff,

I think a graphical sketch of the architecture of the services would be = a great addition to your proposal.

Thanks,
Sandra

---------------------------------------------------------------= ---------------------------------------------
Sandra Gesing
Research Assistant Professor, Department of Computer Science and = Engineering
Computational Scientist, Center for Research Computing
University of Notre Dame
http://www3.nd.edu/~sgesing
= --------------------------------------------------------------------------= ----------------------------------
On Wed, Mar 23, 2016 at 1:50 PM, Miller, Mark = <mmiller@sdsc.edu> wrote:

I like this proposal also very much, and agree with = what Sandy said as well.

 

Mark

 

 

From: Sandra Gesing [mailto:sandra.gesing@nd.edu]
Sent: Tuesday, March 22, 2016 6:12 PM
To: dev@airavata.apache.org
Subject: Re: [GSoC Proposal] In-Situ Simulation = Monitoring and Analysis Using Apache Airavata

 

Hi Jeff,


the proposal looks already excellent. I think it would be beneficial to = have the feature in Airavata that users can directly search for certain = terms in a log file and intermediate results additionally to see the = whole log file and intermediate values.

Thanks,

Sandra


------------------------------------------------------= ------------------------------------------------------
Sandra Gesing

Research Assistant Professor, Department of = Computer Science and Engineering

Computational Scientist, Center for = Research Computing

University of Notre Dame
http://www3.nd.edu/~sgesing
= --------------------------------------------------------------------------= ----------------------------------

=

 

On Tue, Mar 22, 2016 at 8:03 PM, = Jeffery Kinnison <Jeffery.D.Kinnison.1@nd.edu> = wrote:

Hello Dev Team,

I have created a draft of my GSoC proposal = and made it available as at the link below.


https://docs.google.com/document/d/16BCTV__tA9h2Pnx1annaBIJaU2J= mma1ayTHV6BNMzNA/edit?usp=3Dsharing

I = would appreciate any comments to improve this proposal.

Best,

Jeff Kinnison

 




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