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From "Pierce, Marlon" <marpi...@iu.edu>
Subject /file/location bug
Date Tue, 08 Mar 2016 19:32:50 GMT
For the record, here is the stack trace from the bug discussed on hangout:

Marlon

============================

2016-04-04 08:35:39,448 [pool-25-thread-1] INFO  org.apache.airavata.gfac.impl.HPCRemoteCluster
 - Transferring login.host.name.org:/home/pga.submit/PGA_files/PROCESS_003523f0-37fb-4f9f-adb2-c5f484a48981/MUSCLE.stderr
To localhost:/file/location

2016-04-04 08:35:39,508 [pool-25-thread-1] ERROR org.apache.airavata.gfac.impl.SSHUtils  -
/file/location (No such file or directory)

java.io.FileNotFoundException: /file/location (No such file or directory)

at java.io.FileOutputStream.open0(Native Method)

at java.io.FileOutputStream.open(FileOutputStream.java:270)

at java.io.FileOutputStream.<init>(FileOutputStream.java:213)

at java.io.FileOutputStream.<init>(FileOutputStream.java:101)

at org.apache.airavata.gfac.impl.SSHUtils.scpFrom(SSHUtils.java:223)

at org.apache.airavata.gfac.impl.HPCRemoteCluster.copyFrom(HPCRemoteCluster.java:146)

at org.apache.airavata.gfac.impl.task.DataStageTask.execute(DataStageTask.java:75)

at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:718)

at org.apache.airavata.gfac.impl.GFacEngineImpl.outputDataStaging(GFacEngineImpl.java:671)

at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:295)

at org.apache.airavata.gfac.impl.GFacEngineImpl.continueProcess(GFacEngineImpl.java:635)

at org.apache.airavata.gfac.impl.GFacWorker.continueTaskExecution(GFacWorker.java:197)

at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:97)

at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)

at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)

at java.lang.Thread.run(Thread.java:745)

2016-04-04 08:35:39,509 [pool-25-thread-1] INFO  org.apache.airavata.gfac.core.context.TaskContext
 - expId: 123_118298cc-742b-4ebd-bbfa-1e7ce3086f74, processId: PROCESS_003523f0-37fb-4f9f-adb2-c5f484a48981,
taskId: TASK_c22f1b73-54b2-4564-a8fd-cbb22a065029, type: DATA_STAGING:- Task status changed
EXECUTING -> COMPLETED

2016-04-04 08:35:39,517 [pool-25-thread-1] INFO  org.apache.airavata.messaging.core.impl.RabbitMQStatusPublisher
 - Publishing status to rabbitmq...

2016-04-04 08:35:39,517 [pool-25-thread-1] INFO  org.apache.airavata.gfac.core.context.ProcessContext
 - expId: 123_118298cc-742b-4ebd-bbfa-1e7ce3086f74, processId: PROCESS_003523f0-37fb-4f9f-adb2-c5f484a48981
:- Process status changed OUTPUT_DATA_STAGING -> OUTPUT_DATA_STAGING

2016-04-04 08:35:39,526 [pool-25-thread-1] INFO  org.apache.airavata.messaging.core.impl.RabbitMQStatusPublisher
 - Publishing status to rabbitmq...

2016-04-04 08:35:39,527 [pool-25-thread-1] INFO  org.apache.airavata.gfac.core.context.TaskContext
 - expId: 123_118298cc-742b-4ebd-bbfa-1e7ce3086f74, processId: PROCESS_003523f0-37fb-4f9f-adb2-c5f484a48981,
taskId: TASK_5c610fa4-3357-4f22-b14a-464330228b2a, type: DATA_STAGING:- Task status changed
CREATED -> EXECUTING

2016-04-04 08:35:39,528 [pool-8-thread-20] INFO  org.apache.airavata.orchestrator.server.OrchestratorServerHandler
 - expId: 123_118298cc-742b-4ebd-bbfa-1e7ce3086f74, processId: PROCESS_003523f0-37fb-4f9f-adb2-c5f484a48981
:- Process status changed event received for status OUTPUT_DATA_STAGING

2016-04-04 08:35:39,533 [pool-25-thread-1] INFO  org.apache.airavata.messaging.core.impl.RabbitMQStatusPublisher
 - Publishing status to rabbitmq...

2016-04-04 08:35:39,533 [pool-25-thread-1] INFO  org.apache.airavata.gfac.impl.HPCRemoteCluster
 - Transferring login.scinet.ars.usda.gov:/home/pga.submit/PGA_files/PROCESS_003523f0-37fb-4f9f-adb2-c5f484a48981/MUSCLE.stdout
To localhost:/file/location

2016-04-04 08:35:39,594 [pool-25-thread-1] ERROR org.apache.airavata.gfac.impl.SSHUtils  -
/file/location (No such file or directory)

java.io.FileNotFoundException: /file/location (No such file or directory)

at java.io.FileOutputStream.open0(Native Method)

at java.io.FileOutputStream.open(FileOutputStream.java:270)

at java.io.FileOutputStream.<init>(FileOutputStream.java:213)

at java.io.FileOutputStream.<init>(FileOutputStream.java:101)

at org.apache.airavata.gfac.impl.SSHUtils.scpFrom(SSHUtils.java:223)

at org.apache.airavata.gfac.impl.HPCRemoteCluster.copyFrom(HPCRemoteCluster.java:146)

at org.apache.airavata.gfac.impl.task.DataStageTask.execute(DataStageTask.java:75)

at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:718)

at org.apache.airavata.gfac.impl.GFacEngineImpl.outputDataStaging(GFacEngineImpl.java:671)

at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:295)

at org.apache.airavata.gfac.impl.GFacEngineImpl.continueProcess(GFacEngineImpl.java:635)

at org.apache.airavata.gfac.impl.GFacWorker.continueTaskExecution(GFacWorker.java:197)

at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:97)

at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)

at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)

at java.lang.Thread.run(Thread.java:745)

2016-04-04 08:35:39,595 [pool-25-thread-1] INFO  org.apache.airavata.gfac.core.context.TaskContext
 - expId: 123_118298cc-742b-4ebd-bbfa-1e7ce3086f74, processId: PROCESS_003523f0-37fb-4f9f-adb2-c5f484a48981,
taskId: TASK_5c610fa4-3357-4f22-b14a-464330228b2a, type: DATA_STAGING:- Task status changed
EXECUTING -> COMPLETED

2016-04-04 08:35:39,602 [pool-25-thread-1] INFO  org.apache.airavata.messaging.core.impl.RabbitMQStatusPublisher
 - Publishing status to rabbitmq...

2016-04-04 08:35:39,602 [pool-25-thread-1] INFO  org.apache.airavata.gfac.core.context.ProcessContext
 - expId: 123_118298cc-742b-4ebd-bbfa-1e7ce3086f74, processId: PROCESS_003523f0-37fb-4f9f-adb2-c5f484a48981
:- Process status changed OUTPUT_DATA_STAGING -> COMPLETED
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