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From "Marru, Suresh" <sma...@iu.edu>
Subject Re: [SciGaP-Project] How to get experiment output?
Date Wed, 29 Apr 2015 17:00:29 GMT
Hi Kenneth,

Sorry we dropped the ball on this one. We will look into your errors and get back.

Suresh

> On Apr 29, 2015, at 12:23 PM, K Yoshimoto <kenneth@sdsc.edu> wrote:
> 
> 
> The test-drive sdsc portal is still failing.  Now, I can't
> even look at old successful expermients.  The error is:
> 
> Allowed memory size of 134217728 bytes exhausted (tried to allocate 184549633 bytes)
> 
> 
> On Wed, Apr 22, 2015 at 10:10:05AM -0700, K Yoshimoto wrote:
>> 
>> Just following up on this failure.  I'm going to cc scigap list
>> also.
>> 
>> Kenneth
>> 
>> On Fri, Apr 17, 2015 at 11:19:33AM -0700, K Yoshimoto wrote:
>>> 
>>> Hi Nipurn,
>>> 
>>> The Echo example works for me now.  I can see STDOUT when
>>> the job is completed.  Do you have a commandline client example
>>> of retrieving this?  Java client call is fine, Python is better.
>>> 
>>> I am running into a problem running a test experiment of my own.
>>> 
>>> Is there a way to get the full stack trace or other logs?
>>> 
>>> I get the following error output:
>>> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_9041c4bd-5af4-4485-bfe5-1baa062ce664
>>> 
>>> Compute resource 	trestles-login2.sdsc.edu
>>> Experiment Status 	FAILED
>>> Job Status 	SETUP
>>> Creation time 	2015-04-17 18:15:06
>>> Update time 	2015-04-17 18:15:10
>>> Inputs 	
>>> 
>>> arg1: -c
>>> 
>>> arg2: /bin/hostname
>>> Outputs 	Experiment hasn't completed. Experiment Status is : FAILED
>>> Errors 	Error while initializing provider org.apache.airavata.gfac.ssh.provider.impl.SSHProvider.

>>> 
>>> Kenneth
>>> 
>>> On Fri, Apr 17, 2015 at 11:11:00AM -0400, Nipurn Doshi wrote:
>>>> Hi Kenneth,
>>>> 
>>>> The issue is resolved. You can now use -
>>>> http://dev.test-drive.airavata.org/portal/sdsc/public/
>>>> We ran several echo jobs and all seem to be good.
>>>> 
>>>> 
>>>> 
>>>> On Thu, Apr 16, 2015 at 9:31 PM, Chathuri Wimalasena <kamalasini@gmail.com>
>>>> wrote:
>>>> 
>>>>> Dev PGA should be working now Kenneth.
>>>>> 
>>>>> On Thu, Apr 16, 2015 at 5:46 PM, K Yoshimoto <kenneth@sdsc.edu>
wrote:
>>>>> 
>>>>>> 
>>>>>> Nipurn,
>>>>>> 
>>>>>> Thanks for looking into this.  Please send an email update
>>>>>> to the list when it's good to try again.
>>>>>> 
>>>>>> Kenneth
>>>>>> 
>>>>>> On Thu, Apr 16, 2015 at 05:42:01PM -0400, Nipurn Doshi wrote:
>>>>>>> Hi Kenneth,
>>>>>>> 
>>>>>>> We figured out the errors and found out that some of the old
PGA code
>>>>>>> hadn't made their way to the commits.
>>>>>>> Although, we fixed them, right now we are facing the issue of
>>>>>> Experiments
>>>>>>> not launching on SDSC Dev Portal. The problem looks trivial and
we hope
>>>>>> to
>>>>>>> fix it by either today evening or max tomorrow morning.
>>>>>>> 
>>>>>>> 
>>>>>>> 
>>>>>>> On Thu, Apr 16, 2015 at 4:03 PM, Nipurn Doshi <nidoshi@umail.iu.edu>
>>>>>> wrote:
>>>>>>> 
>>>>>>>> We checked and this error exists in sdsc portal. We will
report as
>>>>>> soon as
>>>>>>>> the bug is fixed.
>>>>>>>> 
>>>>>>>> 
>>>>>>>> On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <kenneth@sdsc.edu>
>>>>>> wrote:
>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> My Experiment Summary does not have STDOUT and STDERR
links,
>>>>>>>>> rather it just has this text:
>>>>>>>>> 
>>>>>>>>> Outputs         Experiment hasn't completed. Experiment
Status is :
>>>>>>>>> COMPLETED
>>>>>>>>> 
>>>>>>>>> Is there someone who can investigate this experiment?
>>>>>>>>> 
>>>>>>>>> 
>>>>>> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe
wrote:
>>>>>>>>>> Hi Kenneth,
>>>>>>>>>> 
>>>>>>>>>> If the experiment is completed successfully; should
be able to
>>>>>> click on
>>>>>>>>> the
>>>>>>>>>> STDOUT link and view the output.
>>>>>>>>>> Please see the attached image
>>>>>>>>>> 
>>>>>>>>>> Hope this helps
>>>>>>>>>> 
>>>>>>>>>> Thanks,
>>>>>>>>>> Eroma
>>>>>>>>>> 
>>>>>>>>>> On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <kenneth@sdsc.edu>
>>>>>> wrote:
>>>>>>>>>> 
>>>>>>>>>>> 
>>>>>>>>>>> Thanks, Eroma.
>>>>>>>>>>> 
>>>>>>>>>>> I see the Experiment Summary for this experiment.
 There is
>>>>>>>>>>> no STDOUT field.  This is for the echo experiment.
 There is
>>>>>>>>>>> an Outputs field:
>>>>>>>>>>> 
>>>>>>>>>>> Outputs         Experiment hasn't completed.
Experiment Status
>>>>>> is :
>>>>>>>>>>> COMPLETED
>>>>>>>>>>> 
>>>>>>>>>>> Kenneth
>>>>>>>>>>> 
>>>>>>>>>>> On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma
Abeysinghe wrote:
>>>>>>>>>>>> Hi Kenneth,
>>>>>>>>>>>> 
>>>>>>>>>>>> If you are using the portal (
>>>>>>>>> http://dev.test-drive.airavata.org/portal)
>>>>>>>>>>>> you can view the output in STDOUT
>>>>>>>>>>>> 
>>>>>>>>>>>> For this search for the experiment (Main
Menu --> Experiment
>>>>>> -->
>>>>>>>>> Search
>>>>>>>>>>>> Page) and STDOUT is in the Experiment Summary
Page
>>>>>>>>>>>> 
>>>>>>>>>>>> Hope this helps
>>>>>>>>>>>> 
>>>>>>>>>>>> Thanks,
>>>>>>>>>>>> Eroma
>>>>>>>>>>>> 
>>>>>>>>>>>> On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto
<kenneth@sdsc.edu
>>>>>>> 
>>>>>>>>> wrote:
>>>>>>>>>>>> 
>>>>>>>>>>>>> 
>>>>>>>>>>>>> I am able to run the echo application
in an experiment on
>>>>>>>>>>>>> the test-drive portal.  How do I get
the output from the
>>>>>>>>>>>>> experiment?
>>>>>>>>>>>>> 
>>>>>>>>>>>>> Kenneth
>>>>>>>>>>>>> 
>>>>>>>>>>>>> 
>>>>>>>>>>>> 
>>>>>>>>>>>> 
>>>>>>>>>>>> --
>>>>>>>>>>>> Thank You,
>>>>>>>>>>>> Best Regards,
>>>>>>>>>>>> Eroma
>>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> --
>>>>>>>>>> Thank You,
>>>>>>>>>> Best Regards,
>>>>>>>>>> Eroma
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> --
>>>>>>>> -Sincerely,
>>>>>>>> Nipurn Doshi
>>>>>>>> 
>>>>>>> 
>>>>>>> 
>>>>>>> 
>>>>>>> --
>>>>>>> -Sincerely,
>>>>>>> Nipurn Doshi
>>>>>> 
>>>>> 
>>>>> 
>>>> 
>>>> 
>>>> -- 
>>>> -Sincerely,
>>>> Nipurn Doshi
> 
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