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From K Yoshimoto <kenn...@sdsc.edu>
Subject Re: How to get experiment output?
Date Wed, 29 Apr 2015 16:23:16 GMT

The test-drive sdsc portal is still failing.  Now, I can't
even look at old successful expermients.  The error is:

Allowed memory size of 134217728 bytes exhausted (tried to allocate 184549633 bytes)


On Wed, Apr 22, 2015 at 10:10:05AM -0700, K Yoshimoto wrote:
> 
> Just following up on this failure.  I'm going to cc scigap list
> also.
> 
> Kenneth
> 
> On Fri, Apr 17, 2015 at 11:19:33AM -0700, K Yoshimoto wrote:
> > 
> > Hi Nipurn,
> > 
> >  The Echo example works for me now.  I can see STDOUT when
> > the job is completed.  Do you have a commandline client example
> > of retrieving this?  Java client call is fine, Python is better.
> > 
> >  I am running into a problem running a test experiment of my own.
> > 
> > Is there a way to get the full stack trace or other logs?
> > 
> > I get the following error output:
> > http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_9041c4bd-5af4-4485-bfe5-1baa062ce664
> > 
> > Compute resource 	trestles-login2.sdsc.edu
> > Experiment Status 	FAILED
> > Job Status 	SETUP
> > Creation time 	2015-04-17 18:15:06
> > Update time 	2015-04-17 18:15:10
> > Inputs 	
> > 
> > arg1: -c
> > 
> > arg2: /bin/hostname
> > Outputs 	Experiment hasn't completed. Experiment Status is : FAILED
> > Errors 	Error while initializing provider org.apache.airavata.gfac.ssh.provider.impl.SSHProvider.

> > 
> > Kenneth
> > 
> > On Fri, Apr 17, 2015 at 11:11:00AM -0400, Nipurn Doshi wrote:
> > > Hi Kenneth,
> > > 
> > > The issue is resolved. You can now use -
> > > http://dev.test-drive.airavata.org/portal/sdsc/public/
> > > We ran several echo jobs and all seem to be good.
> > > 
> > > 
> > > 
> > > On Thu, Apr 16, 2015 at 9:31 PM, Chathuri Wimalasena <kamalasini@gmail.com>
> > > wrote:
> > > 
> > > > Dev PGA should be working now Kenneth.
> > > >
> > > > On Thu, Apr 16, 2015 at 5:46 PM, K Yoshimoto <kenneth@sdsc.edu>
wrote:
> > > >
> > > >>
> > > >> Nipurn,
> > > >>
> > > >>  Thanks for looking into this.  Please send an email update
> > > >> to the list when it's good to try again.
> > > >>
> > > >> Kenneth
> > > >>
> > > >> On Thu, Apr 16, 2015 at 05:42:01PM -0400, Nipurn Doshi wrote:
> > > >> > Hi Kenneth,
> > > >> >
> > > >> > We figured out the errors and found out that some of the old
PGA code
> > > >> > hadn't made their way to the commits.
> > > >> > Although, we fixed them, right now we are facing the issue of
> > > >> Experiments
> > > >> > not launching on SDSC Dev Portal. The problem looks trivial and
we hope
> > > >> to
> > > >> > fix it by either today evening or max tomorrow morning.
> > > >> >
> > > >> >
> > > >> >
> > > >> > On Thu, Apr 16, 2015 at 4:03 PM, Nipurn Doshi <nidoshi@umail.iu.edu>
> > > >> wrote:
> > > >> >
> > > >> > > We checked and this error exists in sdsc portal. We will
report as
> > > >> soon as
> > > >> > > the bug is fixed.
> > > >> > >
> > > >> > >
> > > >> > > On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <kenneth@sdsc.edu>
> > > >> wrote:
> > > >> > >
> > > >> > >>
> > > >> > >> My Experiment Summary does not have STDOUT and STDERR
links,
> > > >> > >> rather it just has this text:
> > > >> > >>
> > > >> > >> Outputs         Experiment hasn't completed. Experiment
Status is :
> > > >> > >> COMPLETED
> > > >> > >>
> > > >> > >> Is there someone who can investigate this experiment?
> > > >> > >>
> > > >> > >>
> > > >> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
> > > >> > >>
> > > >> > >>
> > > >> > >> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe
wrote:
> > > >> > >> > Hi Kenneth,
> > > >> > >> >
> > > >> > >> > If the experiment is completed successfully; should
be able to
> > > >> click on
> > > >> > >> the
> > > >> > >> > STDOUT link and view the output.
> > > >> > >> > Please see the attached image
> > > >> > >> >
> > > >> > >> > Hope this helps
> > > >> > >> >
> > > >> > >> > Thanks,
> > > >> > >> > Eroma
> > > >> > >> >
> > > >> > >> > On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <kenneth@sdsc.edu>
> > > >> wrote:
> > > >> > >> >
> > > >> > >> > >
> > > >> > >> > > Thanks, Eroma.
> > > >> > >> > >
> > > >> > >> > >  I see the Experiment Summary for this experiment.
 There is
> > > >> > >> > > no STDOUT field.  This is for the echo experiment.
 There is
> > > >> > >> > > an Outputs field:
> > > >> > >> > >
> > > >> > >> > > Outputs         Experiment hasn't completed.
Experiment Status
> > > >> is :
> > > >> > >> > > COMPLETED
> > > >> > >> > >
> > > >> > >> > > Kenneth
> > > >> > >> > >
> > > >> > >> > > On Thu, Apr 16, 2015 at 03:08:50PM -0400,
Eroma Abeysinghe wrote:
> > > >> > >> > > > Hi Kenneth,
> > > >> > >> > > >
> > > >> > >> > > > If you are using the portal (
> > > >> > >> http://dev.test-drive.airavata.org/portal)
> > > >> > >> > > > you can view the output in STDOUT
> > > >> > >> > > >
> > > >> > >> > > > For this search for the experiment (Main
Menu --> Experiment
> > > >> -->
> > > >> > >> Search
> > > >> > >> > > > Page) and STDOUT is in the Experiment
Summary Page
> > > >> > >> > > >
> > > >> > >> > > > Hope this helps
> > > >> > >> > > >
> > > >> > >> > > > Thanks,
> > > >> > >> > > > Eroma
> > > >> > >> > > >
> > > >> > >> > > > On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto
<kenneth@sdsc.edu
> > > >> >
> > > >> > >> wrote:
> > > >> > >> > > >
> > > >> > >> > > > >
> > > >> > >> > > > > I am able to run the echo application
in an experiment on
> > > >> > >> > > > > the test-drive portal.  How do I
get the output from the
> > > >> > >> > > > > experiment?
> > > >> > >> > > > >
> > > >> > >> > > > > Kenneth
> > > >> > >> > > > >
> > > >> > >> > > > >
> > > >> > >> > > >
> > > >> > >> > > >
> > > >> > >> > > > --
> > > >> > >> > > > Thank You,
> > > >> > >> > > > Best Regards,
> > > >> > >> > > > Eroma
> > > >> > >> > >
> > > >> > >> >
> > > >> > >> >
> > > >> > >> >
> > > >> > >> > --
> > > >> > >> > Thank You,
> > > >> > >> > Best Regards,
> > > >> > >> > Eroma
> > > >> > >>
> > > >> > >>
> > > >> > >>
> > > >> > >
> > > >> > >
> > > >> > > --
> > > >> > > -Sincerely,
> > > >> > > Nipurn Doshi
> > > >> > >
> > > >> >
> > > >> >
> > > >> >
> > > >> > --
> > > >> > -Sincerely,
> > > >> > Nipurn Doshi
> > > >>
> > > >
> > > >
> > > 
> > > 
> > > -- 
> > > -Sincerely,
> > > Nipurn Doshi

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