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From Lahiru Gunathilake <glah...@gmail.com>
Subject Re: airavata-server.sh fails to start?
Date Tue, 14 Oct 2014 23:14:27 GMT
Hi Kenneth,

I was able to reproduce the issue with Ubuntu. My sugession works fine but
I will look in to this and fix it to work with all cases.

Thanks for pointing this out.

Again: I think ./airavata-server.sh will work.

Regards
Lahiru

On Tue, Oct 14, 2014 at 7:11 PM, Lahiru Gunathilake <glahiru@gmail.com>
wrote:

> Hi Kennath,
>
> I am not sure why it is but if you give execute permission you can try. I
> remember having the same issue with some projects I used when I use ubuntu
> bash.
>
> Ex:
>
>  sh ./zkServer.sh start
>
> JMX enabled by default
>
> ./zkServer.sh: 81: /usr/local/zookeeper/zookeeper-3.4.6/bin/zkEnv.sh:
> Syntax error: "(" unexpected (expecting "fi")
>
> sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$
>
> sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$
>
> sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$ sh
> zkServer.sh star
>
> JMX enabled by default
>
> zkServer.sh: 81: /usr/local/zookeeper/zookeeper-3.4.6/bin/zkEnv.sh: Syntax
> error: "(" unexpected (expecting "fi")
>
> sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$
> ./zkServer.sh start
>
> JMX enabled by default
>
> Using config: /usr/local/zookeeper/zookeeper-3.4.6/bin/../conf/zoo.cfg
>
> Starting zookeeper ... STARTED
>
> On Tue, Oct 14, 2014 at 7:08 PM, K Yoshimoto <kenneth@sdsc.edu> wrote:
>
>>
>> As unpacked from the distribition, it does not have execute mode
>> set:
>>
>> ./airavata-server.sh
>> bash: ./airavata-server.sh: Permission denied
>>
>>
>> On Tue, Oct 14, 2014 at 07:05:31PM -0400, Lahiru Gunathilake wrote:
>> > Hi Kennath,
>> >
>> > Can you please try ./airavata-server.sh ?
>> >
>> > Regards
>> > Lahiru
>> >
>> > On Tue, Oct 14, 2014 at 6:55 PM, K Yoshimoto <kenneth@sdsc.edu> wrote:
>> >
>> > >
>> > > sh ./airavata-server.sh
>> > >
>> > > On Tue, Oct 14, 2014 at 04:20:13PM -0400, Saminda Wijeratne wrote:
>> > > > Just curious, are you starting the server like,
>> > > >
>> > > > $ sh airavata-server.sh
>> > > >
>> > > > or
>> > > >
>> > > > $ ./airavata-server.sh
>> > > >
>> > > >
>> > > >
>> > > > On Tue, Oct 14, 2014 at 1:55 PM, K Yoshimoto <kenneth@sdsc.edu>
>> wrote:
>> > > >
>> > > > >
>> > > > > Yes, something is probably sitting on the port.  But should I
>> > > > > comment out the syntax error part of airavata-server.sh for
>> > > > > startup?
>> > > > >
>> > > > > On Tue, Oct 14, 2014 at 01:44:55PM -0400, Marlon Pierce wrote:
>> > > > > > I'm guessing you have some old processes that you may need
to
>> > > manually
>> > > > > > kill (ps -elf|grep java to find).
>> > > > > >
>> > > > > > Marlon
>> > > > > >
>> > > > > > On 10/14/14, 1:38 PM, K Yoshimoto wrote:
>> > > > > > >It gets further, then stops with an address-in-use,
maybe
>> unrelated
>> > > > > issue.
>> > > > > > >
>> > > > > > >
>> > > > > > >...
>> > > > > > >[INFO] Finished starting ZK: State:CONNECTED Timeout:6000
>> > > > > > >sessionid:0x1490fb31c030003 local:/127.0.0.1:42013
>> > > > > > >remoteserver:localhost/127.0.0.1:2181 lastZxid:13 xid:8
sent:8
>> > > recv:9
>> > > > > > >queuedpkts:0 pendingresp:0 queuedevents:0
>> > > > > > >[ERROR] Cannot connect to a RabbitMQ Server:
>> > > > > > >java.net.ConnectException: Connection refused
>> > > > > > >         at java.net.PlainSocketImpl.socketConnect(Native
>> Method)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:327)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:193)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:180)
>> > > > > > >         at
>> > > java.net.SocksSocketImpl.connect(SocksSocketImpl.java:385)
>> > > > > > >         at java.net.Socket.connect(Socket.java:546)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> com.rabbitmq.client.ConnectionFactory.createFrameHandler(ConnectionFactory.java:445)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> com.rabbitmq.client.ConnectionFactory.newConnection(ConnectionFactory.java:504)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> com.rabbitmq.client.ConnectionFactory.newConnection(ConnectionFactory.java:533)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> org.apache.airavata.gfac.monitor.impl.push.amqp.SimpleJobFinishConsumer.listen(SimpleJobFinishConsumer.java:50)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> org.apache.airavata.gfac.monitor.impl.pull.qstat.HPCPullMonitor.<init>(HPCPullMonitor.java:96)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> org.apache.airavata.gfac.monitor.handlers.GridPullMonitorHandler.initProperties(GridPullMonitorHandler.java:71)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.startDaemonHandlers(BetterGfacImpl.java:181)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> org.apache.airavata.gfac.server.GfacServerHandler.<init>(GfacServerHandler.java:108)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> org.apache.airavata.gfac.server.GfacServer.start(GfacServer.java:102)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:289)
>> > > > > > >         at
>> > > > > > >
>> > > > >
>> > >
>> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:141)
>> > > > > > >         at
>> > > > > org.apache.airavata.server.ServerMain.main(ServerMain.java:130)
>> > > > > > >[INFO] ------------- Push monitoring for HPC jobs is
disabled
>> > > > > -------------
>> > > > > > >[INFO] Registering listener:
>> > > > > > >org.apache.airavata.gfac.core.monitor.AiravataJobStatusUpdator
>> > > > > > >[INFO] Registering listener:
>> > > > > > >org.apache.airavata.gfac.core.monitor.AiravataTaskStatusUpdator
>> > > > > > >[INFO] Registering listener:
>> > > > > >
>> > >
>> >org.apache.airavata.gfac.core.monitor.AiravataWorkflowNodeStatusUpdator
>> > > > > > >[INFO] Registering listener:
>> > > > > >
>> > >
>> >org.apache.airavata.api.server.listener.AiravataExperimentStatusUpdator
>> > > > > > >[INFO] Registering listener:
>> > > > > > >org.apache.airavata.gfac.core.monitor.GfacInternalStatusUpdator
>> > > > > > >[INFO] Registering listener:
>> > > > > > >org.apache.airavata.workflow.engine.util.ProxyMonitorPublisher
>> > > > > > >[INFO] Starting Gfac Server on Port 8950
>> > > > > > >[INFO] Listening to Gfac Clients ....
>> > > > > > >Tue Oct 14 10:29:07 PDT 2014 : Could not listen on port
1527
>> on host
>> > > > > > >0.0.0.0:
>> > > > > > >  java.net.BindException: Address already in use
>> > > > > > >[INFO] Database already created for App Catalog!
>> > > > > > >[INFO] Starting Airavata Workflow Server on Port 8931
>> > > > > > >[INFO] Listening to Workflow API Clients ....
>> > > > > > >
>> > > > > > >
>> > > > > > >
>> > > > > > >On Tue, Oct 14, 2014 at 01:21:42PM -0400, Saminda Wijeratne
>> wrote:
>> > > > > > >>If you comment-out or remove the section relating
to
>> > > "f_split=(${f//_/
>> > > > > > >>});", does the script works for you afterwards as
expected to
>> > > start the
>> > > > > > >>server?
>> > > > > > >>
>> > > > > > >>On Tue, Oct 14, 2014 at 1:06 PM, K Yoshimoto <
>> kenneth@sdsc.edu>
>> > > wrote:
>> > > > > > >>
>> > > > > > >>>I'm running Ubuntu 12.04LTS.
>> > > > > > >>>
>> > > > > > >>>On Tue, Oct 14, 2014 at 11:11:36AM -0400, Chathuri
Wimalasena
>> > > wrote:
>> > > > > > >>>>Hi Kenneth,
>> > > > > > >>>>
>> > > > > > >>>>I was able to build and run airavata server
in ubuntu 12.10
>> > > without
>> > > > > any
>> > > > > > >>>>issues.
>> > > > > > >>>>
>> > > > > > >>>>Thanks..
>> > > > > > >>>>Chathuri
>> > > > > > >>>>
>> > > > > > >>>>On Mon, Oct 13, 2014 at 9:05 AM, Marlon
Pierce <
>> marpierc@iu.edu>
>> > > > > wrote:
>> > > > > > >>>>
>> > > > > > >>>>>Hi Kenneth--
>> > > > > > >>>>>
>> > > > > > >>>>>What OS are you using?
>> > > > > > >>>>>
>> > > > > > >>>>>Marlon
>> > > > > > >>>>>
>> > > > > > >>>>>
>> > > > > > >>>>>On 10/11/14, 2:23 PM, K Yoshimoto wrote:
>> > > > > > >>>>>
>> > > > > > >>>>>>It looks like this line:
>> > > > > > >>>>>>
>> > > > > > >>>>>>                  f_split=(${f//_/
});
>> > > > > > >>>>>>
>> > > > > > >>>>>>
>> > > > > > >>>>>>apache-airavata-server-0.14-SNAPSHOT/bin$
sh
>> airavata-server.sh
>> > > > > >
>> >>>>>>...._....................._..............._...._............
>> > > > > > >>>>>>.........._.........
>> > > > > > >>>>>>.../ \..._.__...__._..___| |__...___...../
>> > > > > > >>>\..(_)_.__.__.___...____._|.|_
>> > > > > > >>>>>>.__._..
>> > > > > > >>>>>>../ _ \.| '_ \./ _` |/ __| '_ \./
_ \.../ _ \.| | '__/ _`
>> \
>> > > \./ /
>> > > > > _` |
>> > > > > > >>>>>>__/ _` |.
>> > > > > > >>>>>>./ ___ \| |_) | (_| | (__| |.| |
 __/../ ___ \| | |.| (_|
>> |\ V
>> > > /
>> > > > > (_|
>> > > > > > >>>| ||
>> > > > > > >>>>>>(_| |.
>> > > > > > >>>>>>/_/...\_\
>> > > > > .__/.\__,_|\___|_|.|_|\___|./_/...\_\_|_|..\__,_|.\_/.\__,_|
>> > > > > > >>>>>>\__\__,_|.
>> > > > > >
>> >>>>>>........|_|.................................................
>> > > > > > >>>>>>....................
>> > > > > >
>> >>>>>>............................................................
>> > > > > > >>>>>>....................
>> > > > > >
>> >>>>>>................,+????++~..~~++..+????????+??++.++~...~+=???
>> > > > > > >>>>>>+++.................
>> > > > > >
>> >>>>>>..............:???????....:::...~??????????????.~..::...=???
>> > > > > > >>>>>>?????...............
>> > > > > >
>> >>>>>>............????????..~~..?????..??????????????.?????..~~~.~
>> > > > > > >>>>>>???????.............
>> > > > > >
>> >>>>>>...........?????????I,~I~~??????.+????????????.~??????~=~..?
>> > > > > > >>>>>>????????~...........
>> > > > > >
>> >>>>>>.........?????++??????..????????:.??????????I..????????..???
>> > > > > > >>>>>>?????+????..........
>> > > > > >
>> >>>>>>........??.....???????....???????...???????+..+??????+.I.???
>> > > > > > >>>>>>?????.....?,........
>> > > > > >
>> >>>>>>........????==????????..??..?????..=???????=..?????,.=+?.???
>> > > > > > >>>>>>??????===??=........
>> > > > > >
>> >>>>>>......=??????????+????..+??=.???=.~??????????,.???=,???,.???
>> > > > > > >>>>>>?=+??????????.......
>> > > > > >
>> >>>>>>....??????????+...+I++..???,=...:??????????????.....+??..++
>> > > > > > >>>>>>I?+..,??????????.....
>> > > > > >
>> >>>>>>....???????=??..........??..+??.:=:.???????......??..??=....
>> > > > > > >>>>>>......?=???????=....
>> > > > > >
>> >>>>>>....??????..?...........+?..???.....???????......???.??.....
>> > > > > > >>>>>>......~=.??????=....
>> > > > > >
>> >>>>>>....~???~.~..............?..???.~=..,??????...7..???.?.:....
>> > > > > > >>>>>>..........~????:....
>> > > > > > >>>>>>...7....7 ...............?..????.
...??????...
>> > > > > .????.?.?.............I
>> > > > > > >>>>>>..:.:....
>> > > > > >
>> >>>>>>.....+7=,.+?................????:,I...?????..=.?????.?......
>> > > > > > >>>>>>.......??~.=7+......
>> > > > > >
>> >>>>>>..........????..............??????~...~??..~~??????..?......
>> > > > > > >>>>>>.....+???,..........
>> > > > > >
>> >>>>>>...........???............=.+???????,.?+:.?????????..+......
>> > > > > > >>>>>>.....???+...........
>> > > > > >
>> >>>>>>............??............?,.??????.,??..??????????.,.......
>> > > > > > >>>>>>.....???............
>> > > > > >
>> >>>>>>...........??,.............=.,????.?+....????????I.I........
>> > > > > > >>>>>>......=?............
>> > > > > >
>> >>>>>>..........I?..................+??.:?~.....=??????...........
>> > > > > > >>>>>>.......??...........
>> > > > > >
>> >>>>>>..........??...?...............??.:?=......??????...........
>> > > > > > >>>>>>...?...??...........
>> > > > > >
>> >>>>>>............++?..............?.????...?....??????.+.........
>> > > > > > >>>>>>.....++I............
>> > > > > >
>> >>>>>>.............................?.??????~....???????.?.........
>> > > > > > >>>>>>....................
>> > > > > >
>> >>>>>>............................~~.??????......??????...........
>> > > > > > >>>>>>....................
>> > > > > >
>> >>>>>>.............................=???????......???????+.........
>> > > > > > >>>>>>....................
>> > > > > >
>> >>>>>>..........................=I??++?+++?......?+++++++?+.......
>> > > > > > >>>>>>....................
>> > > > > > >>>>>>..........................,..77..77.........
 ..
>> > > > > > >>>>>>...7..........................
>> > > > > >
>> >>>>>>............................................................
>> > > > > > >>>>>>....................
>> > > > > > >>>>>>airavata-server.sh: 86: airavata-server.sh:
Syntax error:
>> "("
>> > > > > > >>>unexpected
>> > > > > > >>>>>>(expecting "done")
>> > > > > > >>>>>>
>> > > > > > >>>>>>bash --version
>> > > > > > >>>>>>GNU bash, version 4.2.25(1)-release
(x86_64-pc-linux-gnu)
>> > > > > > >>>>>>Copyright (C) 2011 Free Software
Foundation, Inc.
>> > > > > > >>>>>>License GPLv3+: GNU GPL version
3 or later <
>> > > > > > >>>http://gnu.org/licenses/gpl.
>> > > > > > >>>>>>html>
>> > > > > > >>>>>>
>> > > > > > >>>>>>This is free software; you are free
to change and
>> redistribute
>> > > it.
>> > > > > > >>>>>>There is NO WARRANTY, to the extent
permitted by law.
>> > > > > > >>>>>>
>> > > > > > >>>>>>
>> > > > > > >>>>>>On Sat, Oct 11, 2014 at 01:47:45PM
-0400, Raminder Singh
>> wrote:
>> > > > > > >>>>>>
>> > > > > > >>>>>>>I build everything from head
this morning and did not run
>> > > into any
>> > > > > > >>>>>>>problem. I am using Airavata
distribution in
>> > > > > > >>>modules/distribution/server/
>> > > > > > >>>>>>>target/apache-airavata-server-0.14-SNAPSHOT-bin.tar.gz.
>> Only
>> > > > > > >>>exception
>> > > > > > >>>>>>>i am getting is related to RabbitMQ
server but this is a
>> > > optional
>> > > > > > >>>service.
>> > > > > > >>>>>>>   2014-10-11 13:44:45,800 [main]
ERROR
>> > > org.apache.airavata.gfac.
>> > > > > > >>>>>>>monitor.impl.push.amqp.SimpleJobFinishConsumer
 - Cannot
>> > > connect
>> > > > > to a
>> > > > > > >>>>>>>RabbitMQ Server:
>> > > > > > >>>>>>>java.net.ConnectException: Connection
refused
>> > > > > > >>>>>>>
>> > > > > > >>>>>>>Please share more details about
the failure.
>> > > > > > >>>>>>>
>> > > > > > >>>>>>>Thanks
>> > > > > > >>>>>>>Raminder
>> > > > > > >>>>>>>
>> > > > > > >>>>>>>On Oct 10, 2014, at 7:01 PM,
K Yoshimoto <
>> kenneth@sdsc.edu>
>> > > > > wrote:
>> > > > > > >>>>>>>
>> > > > > > >>>>>>>  I'm getting an error when
trying to startup an airavata
>> > > server:
>> > > > > > >>>>>>>>airavata-server.sh: 86:
airavata-server.sh: Syntax
>> error: "("
>> > > > > > >>>>>>>>unexpected (expecting "done")
>> > > > > > >>>>>>>>
>> > > > > > >>>>>>>>
>> > > > > > >>>>>>>>
>> > > > >
>> > >
>> >
>> >
>> >
>> > --
>> > Research Assistant
>> > Science Gateways Group
>> > Indiana University
>>
>
>
>
> --
> Research Assistant
> Science Gateways Group
> Indiana University
>



-- 
Research Assistant
Science Gateways Group
Indiana University

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