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From Lahiru Gunathilake <glah...@gmail.com>
Subject Re: airavata-server.sh fails to start?
Date Tue, 14 Oct 2014 23:11:26 GMT
Hi Kennath,

I am not sure why it is but if you give execute permission you can try. I
remember having the same issue with some projects I used when I use ubuntu
bash.

Ex:

 sh ./zkServer.sh start

JMX enabled by default

./zkServer.sh: 81: /usr/local/zookeeper/zookeeper-3.4.6/bin/zkEnv.sh:
Syntax error: "(" unexpected (expecting "fi")

sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$

sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$

sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$ sh
zkServer.sh star

JMX enabled by default

zkServer.sh: 81: /usr/local/zookeeper/zookeeper-3.4.6/bin/zkEnv.sh: Syntax
error: "(" unexpected (expecting "fi")

sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$
./zkServer.sh start

JMX enabled by default

Using config: /usr/local/zookeeper/zookeeper-3.4.6/bin/../conf/zoo.cfg

Starting zookeeper ... STARTED

On Tue, Oct 14, 2014 at 7:08 PM, K Yoshimoto <kenneth@sdsc.edu> wrote:

>
> As unpacked from the distribition, it does not have execute mode
> set:
>
> ./airavata-server.sh
> bash: ./airavata-server.sh: Permission denied
>
>
> On Tue, Oct 14, 2014 at 07:05:31PM -0400, Lahiru Gunathilake wrote:
> > Hi Kennath,
> >
> > Can you please try ./airavata-server.sh ?
> >
> > Regards
> > Lahiru
> >
> > On Tue, Oct 14, 2014 at 6:55 PM, K Yoshimoto <kenneth@sdsc.edu> wrote:
> >
> > >
> > > sh ./airavata-server.sh
> > >
> > > On Tue, Oct 14, 2014 at 04:20:13PM -0400, Saminda Wijeratne wrote:
> > > > Just curious, are you starting the server like,
> > > >
> > > > $ sh airavata-server.sh
> > > >
> > > > or
> > > >
> > > > $ ./airavata-server.sh
> > > >
> > > >
> > > >
> > > > On Tue, Oct 14, 2014 at 1:55 PM, K Yoshimoto <kenneth@sdsc.edu>
> wrote:
> > > >
> > > > >
> > > > > Yes, something is probably sitting on the port.  But should I
> > > > > comment out the syntax error part of airavata-server.sh for
> > > > > startup?
> > > > >
> > > > > On Tue, Oct 14, 2014 at 01:44:55PM -0400, Marlon Pierce wrote:
> > > > > > I'm guessing you have some old processes that you may need to
> > > manually
> > > > > > kill (ps -elf|grep java to find).
> > > > > >
> > > > > > Marlon
> > > > > >
> > > > > > On 10/14/14, 1:38 PM, K Yoshimoto wrote:
> > > > > > >It gets further, then stops with an address-in-use, maybe
> unrelated
> > > > > issue.
> > > > > > >
> > > > > > >
> > > > > > >...
> > > > > > >[INFO] Finished starting ZK: State:CONNECTED Timeout:6000
> > > > > > >sessionid:0x1490fb31c030003 local:/127.0.0.1:42013
> > > > > > >remoteserver:localhost/127.0.0.1:2181 lastZxid:13 xid:8
sent:8
> > > recv:9
> > > > > > >queuedpkts:0 pendingresp:0 queuedevents:0
> > > > > > >[ERROR] Cannot connect to a RabbitMQ Server:
> > > > > > >java.net.ConnectException: Connection refused
> > > > > > >         at java.net.PlainSocketImpl.socketConnect(Native
> Method)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:327)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:193)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:180)
> > > > > > >         at
> > > java.net.SocksSocketImpl.connect(SocksSocketImpl.java:385)
> > > > > > >         at java.net.Socket.connect(Socket.java:546)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> com.rabbitmq.client.ConnectionFactory.createFrameHandler(ConnectionFactory.java:445)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> com.rabbitmq.client.ConnectionFactory.newConnection(ConnectionFactory.java:504)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> com.rabbitmq.client.ConnectionFactory.newConnection(ConnectionFactory.java:533)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> org.apache.airavata.gfac.monitor.impl.push.amqp.SimpleJobFinishConsumer.listen(SimpleJobFinishConsumer.java:50)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> org.apache.airavata.gfac.monitor.impl.pull.qstat.HPCPullMonitor.<init>(HPCPullMonitor.java:96)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> org.apache.airavata.gfac.monitor.handlers.GridPullMonitorHandler.initProperties(GridPullMonitorHandler.java:71)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.startDaemonHandlers(BetterGfacImpl.java:181)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> org.apache.airavata.gfac.server.GfacServerHandler.<init>(GfacServerHandler.java:108)
> > > > > > >         at
> > > > > > >
> > > > >
> org.apache.airavata.gfac.server.GfacServer.start(GfacServer.java:102)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:289)
> > > > > > >         at
> > > > > > >
> > > > >
> > >
> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:141)
> > > > > > >         at
> > > > > org.apache.airavata.server.ServerMain.main(ServerMain.java:130)
> > > > > > >[INFO] ------------- Push monitoring for HPC jobs is disabled
> > > > > -------------
> > > > > > >[INFO] Registering listener:
> > > > > > >org.apache.airavata.gfac.core.monitor.AiravataJobStatusUpdator
> > > > > > >[INFO] Registering listener:
> > > > > > >org.apache.airavata.gfac.core.monitor.AiravataTaskStatusUpdator
> > > > > > >[INFO] Registering listener:
> > > > > >
> > >
> >org.apache.airavata.gfac.core.monitor.AiravataWorkflowNodeStatusUpdator
> > > > > > >[INFO] Registering listener:
> > > > > >
> > >
> >org.apache.airavata.api.server.listener.AiravataExperimentStatusUpdator
> > > > > > >[INFO] Registering listener:
> > > > > > >org.apache.airavata.gfac.core.monitor.GfacInternalStatusUpdator
> > > > > > >[INFO] Registering listener:
> > > > > > >org.apache.airavata.workflow.engine.util.ProxyMonitorPublisher
> > > > > > >[INFO] Starting Gfac Server on Port 8950
> > > > > > >[INFO] Listening to Gfac Clients ....
> > > > > > >Tue Oct 14 10:29:07 PDT 2014 : Could not listen on port
1527 on
> host
> > > > > > >0.0.0.0:
> > > > > > >  java.net.BindException: Address already in use
> > > > > > >[INFO] Database already created for App Catalog!
> > > > > > >[INFO] Starting Airavata Workflow Server on Port 8931
> > > > > > >[INFO] Listening to Workflow API Clients ....
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >On Tue, Oct 14, 2014 at 01:21:42PM -0400, Saminda Wijeratne
> wrote:
> > > > > > >>If you comment-out or remove the section relating to
> > > "f_split=(${f//_/
> > > > > > >>});", does the script works for you afterwards as expected
to
> > > start the
> > > > > > >>server?
> > > > > > >>
> > > > > > >>On Tue, Oct 14, 2014 at 1:06 PM, K Yoshimoto <kenneth@sdsc.edu
> >
> > > wrote:
> > > > > > >>
> > > > > > >>>I'm running Ubuntu 12.04LTS.
> > > > > > >>>
> > > > > > >>>On Tue, Oct 14, 2014 at 11:11:36AM -0400, Chathuri
Wimalasena
> > > wrote:
> > > > > > >>>>Hi Kenneth,
> > > > > > >>>>
> > > > > > >>>>I was able to build and run airavata server
in ubuntu 12.10
> > > without
> > > > > any
> > > > > > >>>>issues.
> > > > > > >>>>
> > > > > > >>>>Thanks..
> > > > > > >>>>Chathuri
> > > > > > >>>>
> > > > > > >>>>On Mon, Oct 13, 2014 at 9:05 AM, Marlon Pierce
<
> marpierc@iu.edu>
> > > > > wrote:
> > > > > > >>>>
> > > > > > >>>>>Hi Kenneth--
> > > > > > >>>>>
> > > > > > >>>>>What OS are you using?
> > > > > > >>>>>
> > > > > > >>>>>Marlon
> > > > > > >>>>>
> > > > > > >>>>>
> > > > > > >>>>>On 10/11/14, 2:23 PM, K Yoshimoto wrote:
> > > > > > >>>>>
> > > > > > >>>>>>It looks like this line:
> > > > > > >>>>>>
> > > > > > >>>>>>                  f_split=(${f//_/ });
> > > > > > >>>>>>
> > > > > > >>>>>>
> > > > > > >>>>>>apache-airavata-server-0.14-SNAPSHOT/bin$
sh
> airavata-server.sh
> > > > > >
> >>>>>>...._....................._..............._...._............
> > > > > > >>>>>>.........._.........
> > > > > > >>>>>>.../ \..._.__...__._..___| |__...___...../
> > > > > > >>>\..(_)_.__.__.___...____._|.|_
> > > > > > >>>>>>.__._..
> > > > > > >>>>>>../ _ \.| '_ \./ _` |/ __| '_ \./ _
\.../ _ \.| | '__/ _` \
> > > \./ /
> > > > > _` |
> > > > > > >>>>>>__/ _` |.
> > > > > > >>>>>>./ ___ \| |_) | (_| | (__| |.| |  __/../
___ \| | |.| (_|
> |\ V
> > > /
> > > > > (_|
> > > > > > >>>| ||
> > > > > > >>>>>>(_| |.
> > > > > > >>>>>>/_/...\_\
> > > > > .__/.\__,_|\___|_|.|_|\___|./_/...\_\_|_|..\__,_|.\_/.\__,_|
> > > > > > >>>>>>\__\__,_|.
> > > > > >
> >>>>>>........|_|.................................................
> > > > > > >>>>>>....................
> > > > > >
> >>>>>>............................................................
> > > > > > >>>>>>....................
> > > > > >
> >>>>>>................,+????++~..~~++..+????????+??++.++~...~+=???
> > > > > > >>>>>>+++.................
> > > > > >
> >>>>>>..............:???????....:::...~??????????????.~..::...=???
> > > > > > >>>>>>?????...............
> > > > > >
> >>>>>>............????????..~~..?????..??????????????.?????..~~~.~
> > > > > > >>>>>>???????.............
> > > > > >
> >>>>>>...........?????????I,~I~~??????.+????????????.~??????~=~..?
> > > > > > >>>>>>????????~...........
> > > > > >
> >>>>>>.........?????++??????..????????:.??????????I..????????..???
> > > > > > >>>>>>?????+????..........
> > > > > >
> >>>>>>........??.....???????....???????...???????+..+??????+.I.???
> > > > > > >>>>>>?????.....?,........
> > > > > >
> >>>>>>........????==????????..??..?????..=???????=..?????,.=+?.???
> > > > > > >>>>>>??????===??=........
> > > > > >
> >>>>>>......=??????????+????..+??=.???=.~??????????,.???=,???,.???
> > > > > > >>>>>>?=+??????????.......
> > > > > > >>>>>>....??????????+...+I++..???,=...:??????????????.....+??..++
> > > > > > >>>>>>I?+..,??????????.....
> > > > > >
> >>>>>>....???????=??..........??..+??.:=:.???????......??..??=....
> > > > > > >>>>>>......?=???????=....
> > > > > >
> >>>>>>....??????..?...........+?..???.....???????......???.??.....
> > > > > > >>>>>>......~=.??????=....
> > > > > >
> >>>>>>....~???~.~..............?..???.~=..,??????...7..???.?.:....
> > > > > > >>>>>>..........~????:....
> > > > > > >>>>>>...7....7 ...............?..????. ...??????...
> > > > > .????.?.?.............I
> > > > > > >>>>>>..:.:....
> > > > > >
> >>>>>>.....+7=,.+?................????:,I...?????..=.?????.?......
> > > > > > >>>>>>.......??~.=7+......
> > > > > >
> >>>>>>..........????..............??????~...~??..~~??????..?......
> > > > > > >>>>>>.....+???,..........
> > > > > >
> >>>>>>...........???............=.+???????,.?+:.?????????..+......
> > > > > > >>>>>>.....???+...........
> > > > > >
> >>>>>>............??............?,.??????.,??..??????????.,.......
> > > > > > >>>>>>.....???............
> > > > > >
> >>>>>>...........??,.............=.,????.?+....????????I.I........
> > > > > > >>>>>>......=?............
> > > > > >
> >>>>>>..........I?..................+??.:?~.....=??????...........
> > > > > > >>>>>>.......??...........
> > > > > >
> >>>>>>..........??...?...............??.:?=......??????...........
> > > > > > >>>>>>...?...??...........
> > > > > >
> >>>>>>............++?..............?.????...?....??????.+.........
> > > > > > >>>>>>.....++I............
> > > > > >
> >>>>>>.............................?.??????~....???????.?.........
> > > > > > >>>>>>....................
> > > > > >
> >>>>>>............................~~.??????......??????...........
> > > > > > >>>>>>....................
> > > > > >
> >>>>>>.............................=???????......???????+.........
> > > > > > >>>>>>....................
> > > > > >
> >>>>>>..........................=I??++?+++?......?+++++++?+.......
> > > > > > >>>>>>....................
> > > > > > >>>>>>..........................,..77..77.........
 ..
> > > > > > >>>>>>...7..........................
> > > > > >
> >>>>>>............................................................
> > > > > > >>>>>>....................
> > > > > > >>>>>>airavata-server.sh: 86: airavata-server.sh:
Syntax error:
> "("
> > > > > > >>>unexpected
> > > > > > >>>>>>(expecting "done")
> > > > > > >>>>>>
> > > > > > >>>>>>bash --version
> > > > > > >>>>>>GNU bash, version 4.2.25(1)-release
(x86_64-pc-linux-gnu)
> > > > > > >>>>>>Copyright (C) 2011 Free Software Foundation,
Inc.
> > > > > > >>>>>>License GPLv3+: GNU GPL version 3 or
later <
> > > > > > >>>http://gnu.org/licenses/gpl.
> > > > > > >>>>>>html>
> > > > > > >>>>>>
> > > > > > >>>>>>This is free software; you are free
to change and
> redistribute
> > > it.
> > > > > > >>>>>>There is NO WARRANTY, to the extent
permitted by law.
> > > > > > >>>>>>
> > > > > > >>>>>>
> > > > > > >>>>>>On Sat, Oct 11, 2014 at 01:47:45PM -0400,
Raminder Singh
> wrote:
> > > > > > >>>>>>
> > > > > > >>>>>>>I build everything from head this
morning and did not run
> > > into any
> > > > > > >>>>>>>problem. I am using Airavata distribution
in
> > > > > > >>>modules/distribution/server/
> > > > > > >>>>>>>target/apache-airavata-server-0.14-SNAPSHOT-bin.tar.gz.
> Only
> > > > > > >>>exception
> > > > > > >>>>>>>i am getting is related to RabbitMQ
server but this is a
> > > optional
> > > > > > >>>service.
> > > > > > >>>>>>>   2014-10-11 13:44:45,800 [main]
ERROR
> > > org.apache.airavata.gfac.
> > > > > > >>>>>>>monitor.impl.push.amqp.SimpleJobFinishConsumer
 - Cannot
> > > connect
> > > > > to a
> > > > > > >>>>>>>RabbitMQ Server:
> > > > > > >>>>>>>java.net.ConnectException: Connection
refused
> > > > > > >>>>>>>
> > > > > > >>>>>>>Please share more details about
the failure.
> > > > > > >>>>>>>
> > > > > > >>>>>>>Thanks
> > > > > > >>>>>>>Raminder
> > > > > > >>>>>>>
> > > > > > >>>>>>>On Oct 10, 2014, at 7:01 PM, K Yoshimoto
<
> kenneth@sdsc.edu>
> > > > > wrote:
> > > > > > >>>>>>>
> > > > > > >>>>>>>  I'm getting an error when trying
to startup an airavata
> > > server:
> > > > > > >>>>>>>>airavata-server.sh: 86: airavata-server.sh:
Syntax
> error: "("
> > > > > > >>>>>>>>unexpected (expecting "done")
> > > > > > >>>>>>>>
> > > > > > >>>>>>>>
> > > > > > >>>>>>>>
> > > > >
> > >
> >
> >
> >
> > --
> > Research Assistant
> > Science Gateways Group
> > Indiana University
>



-- 
Research Assistant
Science Gateways Group
Indiana University

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