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From K Yoshimoto <kenn...@sdsc.edu>
Subject Re: xbaya-gui distribution?
Date Wed, 29 Oct 2014 19:27:48 GMT

Looks like my classpath has version 1.7.2, rather than 1.7.6.
I was trying a new git pull, mvn clean install to try to see
where I'm getting the bad path.  My mvn clean install is hanging
trying to run an experiment.  Is the big refactoring making things
unstable right now?

mvn clean install
...
[INFO] Running job in localhost
[INFO] ========================
[INFO] Adding applications...
[INFO] Creating experiment...
[INFO] Experiment Id returned : echoExperiment_ca564d17-8d7f-4d3d-821b-18735ac2ace4
[INFO] Experiment launched successfully

[INFO] Monitoring job in localhost
[INFO] ===========================
[INFO] echoExperiment_ca564d17-8d7f-4d3d-821b-18735ac2ace4 : CREATED [Wed Oct 29 11:58:31
PDT 2014]
[INFO] echoExperiment_ca564d17-8d7f-4d3d-821b-18735ac2ace4 : LAUNCHED [Wed Oct 29 11:58:33
PDT 2014]
[INFO] echoExperiment_ca564d17-8d7f-4d3d-821b-18735ac2ace4 : EXECUTING [Wed Oct 29 11:58:36
PDT 2014]



On Fri, Oct 24, 2014 at 09:46:59PM -0400, Shameera Rathnayaka wrote:
> Hi Kenneth,
> 
> Check that slf4j-api-1.7.6.jar is in your class path? if not add it to the
> class path, normally this should be added to class path when we run "mvn
> clean install"(download the jar) and "mvn eclipse:eclipse" (Added jar to
> the project classpath). not sure why that is not in classpath.
> 
> Yes, that warning can be ignored.
> 
> Thanks,
> Shameera.
> 
> On Fri, Oct 24, 2014 at 7:07 PM, K Yoshimoto <kenneth@sdsc.edu> wrote:
> 
> >
> > Thanks for the hints, Shameera.
> > I'm not seeing red libraries or other errors in the run configurations
> > or build path.
> >
> > I'm seeing this error now:
> > Exception in thread "main" java.lang.NoClassDefFoundError:
> > org/slf4j/LoggerFactory
> >         at org.apache.airavata.xbaya.XBaya.<clinit>(XBaya.java:35)
> > Caused by: java.lang.ClassNotFoundException: org.slf4j.LoggerFactory
> >         at java.net.URLClassLoader$1.run(URLClassLoader.java:217)
> >         at java.security.AccessController.doPrivileged(Native Method)
> >         at java.net.URLClassLoader.findClass(URLClassLoader.java:205)
> >         at java.lang.ClassLoader.loadClass(ClassLoader.java:323)
> >         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294)
> >         at java.lang.ClassLoader.loadClass(ClassLoader.java:268)
> >         ... 1 more
> > Could not find the main class: org.apache.airavata.xbaya.XBaya. Program
> > will exit.
> >
> > From mvn clean install, I do get this warning:
> >
> > Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.031 sec
> > Running org.apache.airavata.security.userstore.JDBCUserStoreTest
> > SLF4J: Class path contains multiple SLF4J bindings.
> > SLF4J: Found binding in
> > [jar:file:/home/john/.m2/repository/org/slf4j/slf4j-log4j12/1.7.6/slf4j-log4j12-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> > SLF4J: Found binding in
> > [jar:file:/home/john/.m2/repository/org/slf4j/slf4j-simple/1.7.6/slf4j-simple-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> > SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
> > explanation.
> > SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
> > log4j:WARN No appenders could be found for logger
> > (org.apache.airavata.security.util.PasswordDigester).
> > log4j:WARN Please initialize the log4j system properly.
> > log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for
> > more info.
> > Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 57.169 sec
> > Running org.apache.airavata.security.userstore.SessionDBUserStoreTest
> >
> > Is the warning ignorable, or could this be causing a failure to find main?
> >
> > Kenneth
> >
> > On Thu, Oct 23, 2014 at 08:32:47PM -0400, Shameera Rathnayaka wrote:
> > > Hi Kenneth,
> > >
> > > I am not much familiar with eclipse. But after googling the above issue
> > > found following will help you to resolve classpath issue.
> > >
> > > 1) Run Configurations
> > >
> > >    - Right click on your project
> > >       - then click "Run" -> "Run Configurations..."
> > >       - there check your settings for you project
> > >       - here look into you tab "Classpath" under "User Entries"
> > >
> > > 2) Project classpath
> > >
> > >    - Right click on your project -> "Properties" -> "Java Build Path"
> > >       - now check the "Source" Tab as well as your "Libraries" Tab
> > >       - Problems should be marked red in the "Libraries" tab
> > >
> > > Thanks,
> > > Shameera.
> > >
> > > On Thu, Oct 23, 2014 at 5:45 PM, K Yoshimoto <kenneth@sdsc.edu> wrote:
> > >
> > > >
> > > > I did
> > > > git pull
> > > > mvn clean install
> > > > mvn eclipse:clean
> > > > mvn eclipse:eclipse
> > > >
> > > > I am getting an error when trying to run XBaya from Eclipse:
> > > > "The project: airavata-workflow-model-core which is referenced by the
> > > > classpath, does not exist."
> > > >
> > > > Maybe I have some garbage left over in my config somewhere?  Or is
> > > > airavata-workflow-model-core supposed to be there?
> > > >
> > > > I think mvn eclipse:eclipse worked:
> > > > ...
> > > > [INFO]
> > > > [INFO] <<< maven-eclipse-plugin:2.9:eclipse (default-cli) @
> > > > airavata-xbaya-gui <<<
> > > > [INFO]
> > > > [INFO] --- maven-eclipse-plugin:2.9:eclipse (default-cli) @
> > > > airavata-xbaya-gui ---
> > > > [INFO] Using Eclipse Workspace: null
> > > > [INFO] Adding default classpath container:
> > > > org.eclipse.jdt.launching.JRE_CONTAINER
> > > > [INFO] Wrote Eclipse project for "airavata-xbaya-gui" to
> > > > /media/scigap/scigap/javaclient/airavata/modules/xbaya-gui.
> > > > [INFO]
> > > > [INFO]
> > > >
> > ------------------------------------------------------------------------
> > > > [INFO] Reactor Summary:
> > > > [INFO]
> > > > [INFO] Airavata .......................................... SUCCESS
> > [1.564s]
> > > > [INFO] Airavata Configuration ............................ SUCCESS
> > [0.042s]
> > > > [INFO] Airavata Server Configuration ..................... SUCCESS
> > [0.065s]
> > > > [INFO] Airavata Client Configuration ..................... SUCCESS
> > [0.060s]
> > > > [INFO] Airavata API ...................................... SUCCESS
> > [0.086s]
> > > > [INFO] Airavata Data Models .............................. SUCCESS
> > [0.488s]
> > > > [INFO] Airavata Generated Stubs Skeltons ................. SUCCESS
> > [0.211s]
> > > > [INFO] Airavata Model Utilities .......................... SUCCESS
> > [0.157s]
> > > > [INFO] Airavata Commons .................................. SUCCESS
> > [0.063s]
> > > > [INFO] Airavata Common Utilities ......................... SUCCESS
> > [2.065s]
> > > > [INFO] Airavata GFac Schema Utilities .................... SUCCESS
> > [1.323s]
> > > > [INFO] Airavata Credential Store ......................... SUCCESS
> > [1.085s]
> > > > [INFO] Airavata Registry ................................. SUCCESS
> > [0.026s]
> > > > [INFO] Airavata Registry CPI ............................. SUCCESS
> > [0.353s]
> > > > [INFO] Airavata JPA Registry ............................. SUCCESS
> > [1.008s]
> > > > [INFO] Airavata Application Catalog ...................... SUCCESS
> > [0.063s]
> > > > [INFO] Airavata Application Catalog CPI .................. SUCCESS
> > [0.532s]
> > > > [INFO] Airavata Application Catalog Data ................. SUCCESS
> > [0.544s]
> > > > [INFO] Airavata Workflow Execution Context ............... SUCCESS
> > [0.598s]
> > > > [INFO] Airavata WS Messenger ............................. SUCCESS
> > [0.054s]
> > > > [INFO] Airavata Messenger Commons ........................ SUCCESS
> > [0.863s]
> > > > [INFO] Airavata Messenger Client ......................... SUCCESS
> > [0.690s]
> > > > [INFO] Airavata Workflow Tracking ........................ SUCCESS
> > [0.817s]
> > > > [INFO] Airavata Messaging Framework ...................... SUCCESS
> > [0.022s]
> > > > [INFO] Airavata Messaging Framework Core ................. SUCCESS
> > [0.365s]
> > > > [INFO] Airavata GFac ..................................... SUCCESS
> > [0.021s]
> > > > [INFO] Airavata GFac Core ................................ SUCCESS
> > [0.542s]
> > > > [INFO] Airavata Gfac Service ............................. SUCCESS
> > [0.705s]
> > > > [INFO] GSISSH Library .................................... SUCCESS
> > [0.282s]
> > > > [INFO] Airavata GFac GSI-SSH implementation .............. SUCCESS
> > [0.575s]
> > > > [INFO] Airavata GFac SSH implementation .................. SUCCESS
> > [0.737s]
> > > > [INFO] Airavata GFac Grid Job Monitor .................... SUCCESS
> > [2.168s]
> > > > [INFO] Airavata GFac Local implementation ................ SUCCESS
> > [1.005s]
> > > > [INFO] Airavata Orchestrator ............................. SUCCESS
> > [0.046s]
> > > > [INFO] Airavata Orchestrator Core ........................ SUCCESS
> > [1.460s]
> > > > [INFO] Airavata Orchestrator Service ..................... SUCCESS
> > [1.036s]
> > > > [INFO] Airavata Workflow Model Parent .................... SUCCESS
> > [0.023s]
> > > > [INFO] Airavata Workflow Model Core ...................... SUCCESS
> > [0.469s]
> > > > [INFO] Airavata Workflow Component ....................... SUCCESS
> > [0.547s]
> > > > [INFO] Airavata WS Monitor ............................... SUCCESS
> > [0.500s]
> > > > [INFO] Airavata GFac EC2 Implementation .................. SUCCESS
> > [0.638s]
> > > > [INFO] Airavata Workflow Engine .......................... SUCCESS
> > [0.770s]
> > > > [INFO] Airavata API Server ............................... SUCCESS
> > [0.762s]
> > > > [INFO] Airavata Client SDKS .............................. SUCCESS
> > [0.019s]
> > > > [INFO] Apache Airavata PHP SDK ........................... SUCCESS
> > [0.023s]
> > > > [INFO] Airavata Client CPP SDK ........................... SUCCESS
> > [0.045s]
> > > > [INFO] Airavata Client Samples ........................... SUCCESS
> > [0.101s]
> > > > [INFO] Airavata Client ................................... SUCCESS
> > [0.545s]
> > > > [INFO] Airavata GFac Hadoop implementation ............... SUCCESS
> > [1.878s]
> > > > [INFO] Airavata GFac GRAM implementation ................. SUCCESS
> > [0.472s]
> > > > [INFO] Airavata GFac BES implementation .................. SUCCESS
> > [1.400s]
> > > > [INFO] Airavata Security Implementation .................. SUCCESS
> > [0.221s]
> > > > [INFO] Airavata Credential Store Service ................. SUCCESS
> > [0.018s]
> > > > [INFO] airavata-credential-store-webapp .................. SUCCESS
> > [0.359s]
> > > > [INFO] Airavata Orchestrator Client SDK .................. SUCCESS
> > [0.390s]
> > > > [INFO] Airavata Tools .................................... SUCCESS
> > [0.020s]
> > > > [INFO] registry-tool ..................................... SUCCESS
> > [0.052s]
> > > > [INFO] Airavata Standalone Server ........................ SUCCESS
> > [0.493s]
> > > > [INFO] Airavata Test Suite ............................... SUCCESS
> > [0.576s]
> > > > [INFO] distribution ...................................... SUCCESS
> > [0.044s]
> > > > [INFO] Airavata server distribution ...................... SUCCESS
> > [1.686s]
> > > > [INFO] Airavata Client Distribution Parent ............... SUCCESS
> > [0.022s]
> > > > [INFO] Airavata Client Java Distribution ................. SUCCESS
> > [0.522s]
> > > > [INFO] Airavata release artifacts ........................ SUCCESS
> > [0.035s]
> > > > [INFO] Airavata Integration Tests ........................ SUCCESS
> > [0.695s]
> > > > [INFO] Airavata XBaya .................................... SUCCESS
> > [0.680s]
> > > > [INFO]
> > > >
> > ------------------------------------------------------------------------
> > > > [INFO] BUILD SUCCESS
> > > > [INFO]
> > > >
> > ------------------------------------------------------------------------
> > > > [INFO] Total time: 38.665s
> > > > [INFO] Finished at: Thu Oct 23 14:20:59 PDT 2014
> > > > [INFO] Final Memory: 45M/273M
> > > > [INFO]
> > > >
> > ------------------------------------------------------------------------
> > > >
> > > >
> > > >
> > > > On Thu, Oct 23, 2014 at 01:26:57PM -0700, K Yoshimoto wrote:
> > > > >
> > > > > Shameera,
> > > > >
> > > > >  Thanks for the info.  I did not do the mvn eclipse:eclipse.
> > > > > I'll update my repo, then do mvn eclipse:eclipse and delete/load
> > > > > XBaya.  I'll update if it works or if I run into something else.
> > > > >
> > > > > Kenneth
> > > > >
> > > > > On Thu, Oct 23, 2014 at 04:13:34PM -0400, Shameera Rathnayaka wrote:
> > > > > > Hi Yoshimoto,
> > > > > >
> > > > > > I just try to build the latest trunk and i don't see any
> > compilation
> > > > error.
> > > > > > To narrow down the issue, I have few questions for you.
> > > > > > 1. are you working on latest trunk or previous released version?
> > if it
> > > > is
> > > > > > trunk make sure you have latest revision. if it is previous
> > version,
> > > > which
> > > > > > version you are using?
> > > > > > 2. Could you able to build the source code using "mvn clean
> > install"
> > > > > > without any issue?
> > > > > > 3. Did you run mvn eclispse:eclipse command before you open
the
> > project
> > > > > > from eclipse?
> > > > > >
> > > > > > According to the error stack it seems eclipse project doesn't
has
> > all
> > > > > > required jar in class path."mvn eclipse:eclipse" will solve
this
> > issue
> > > > but
> > > > > > to effect the changes, delete the airavata eclipse project and
> > reopen
> > > > the
> > > > > > source code as new project, in other ward reload the eclipse
> > project.
> > > > Now
> > > > > > try to run the XBaya class.
> > > > > >
> > > > > > I am waiting for you answers to my above questions, please let
me
> > know
> > > > if
> > > > > > you hit any issue down the path.
> > > > > >
> > > > > > Thanks,
> > > > > > Shameera.
> > > > > >
> > > > > > On Thu, Oct 23, 2014 at 3:46 PM, K Yoshimoto <kenneth@sdsc.edu>
> > wrote:
> > > > > >
> > > > > > >
> > > > > > > Hi,
> > > > > > >
> > > > > > >  I am trying to start up the XBaya GUI from Eclipse, but
get
> > > > > > > an error about missing type ErrorWindow.  Has anyone seen
this?
> > > > > > > Where is ErrorWindow supposed to come from?
> > > > > > >
> > > > > > > SLF4J: Class path contains multiple SLF4J bindings.
> > > > > > > SLF4J: Found binding in
> > > > > > >
> > > >
> > [jar:file:/media/scigap/scigap/javaclient/airavata/modules/credential-store-service/credential-store-webapp/target/credential-store/WEB-INF/lib/slf4j-log4j12-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> > > > > > > SLF4J: Found binding in
> > > > > > >
> > > >
> > [jar:file:/media/scigap/scigap/javaclient/airavata/modules/credential-store-service/credential-store-webapp/target/credential-store/WEB-INF/lib/slf4j-simple-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> > > > > > > SLF4J: Found binding in
> > > > > > >
> > > >
> > [jar:file:/media/scigap/scigap/javaclient/airavata/modules/integration-tests/target/apache-airavata-server-0.14-SNAPSHOT/lib/slf4j-log4j12-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> > > > > > > SLF4J: Found binding in
> > > > > > >
> > > >
> > [jar:file:/media/scigap/scigap/javaclient/airavata/modules/workflow-model/workflow-engine/target/jnlp/lib/slf4j-log4j12-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> > > > > > > SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings
> > for an
> > > > > > > explanation.
> > > > > > > SLF4J: Actual binding is of type
> > [org.slf4j.impl.Log4jLoggerFactory]
> > > > > > > Exception in thread "main" java.lang.Error: Unresolved
> > compilation
> > > > > > > problems:
> > > > > > >         The method getErrorWindow() from the type XBayaGUI
> > refers to
> > > > the
> > > > > > > missing type ErrorWindow
> > > > > > >         The method getErrorWindow() from the type XBayaGUI
> > refers to
> > > > the
> > > > > > > missing type ErrorWindow
> > > > > > >
> > > > > > >         at org.apache.airavata.xbaya.XBaya.<init>(XBaya.java:56)
> > > > > > >         at org.apache.airavata.xbaya.XBaya.main(XBaya.java:270)
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Kenneth
> > > > > > >
> > > > > > > On Thu, Oct 16, 2014 at 08:19:36AM -0400, ishara premadasa
wrote:
> > > > > > > > Hi Kenneth,
> > > > > > > >
> > > > > > > > I have attached a sample guide on how to run a simple
workflow
> > with
> > > > > > > > Airavata in the thread 'Unable to start Airavata after
the
> > source
> > > > build'
> > > > > > > .
> > > > > > > > I think you can refer to that till the Quickstart
tutorials are
> > > > > > > officially
> > > > > > > > online.
> > > > > > > >
> > > > > > > > In order to answer you question, the XBaya GUI binary
> > distribution
> > > > is not
> > > > > > > > yet present in the trunk. Therefore at present XBaya
GUI can't
> > be
> > > > started
> > > > > > > > by extracting XBaya GUI archive. Instead the GUI client
is
> > started
> > > > by
> > > > > > > > directly running org.apache.airavata.xbaya.XBaya class
through
> > an
> > > > IDE.
> > > > > > > >
> > > > > > > > Hope this helps.
> > > > > > > >
> > > > > > > > Thanks!
> > > > > > > > Ishara
> > > > > > > >
> > > > > > > > On Wed, Oct 15, 2014 at 4:03 PM, K Yoshimoto <kenneth@sdsc.edu
> > >
> > > > wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > Thanks, Suresh.  I'll keep an eye on the dev
list to see when
> > > > > > > > > things are more up-to-date.  If you notice things
are ready,
> > > > > > > > > could you ping me also?
> > > > > > > > >
> > > > > > > > > Kenneth
> > > > > > > > >
> > > > > > > > > On Wed, Oct 15, 2014 at 03:56:46PM -0400, Suresh
Marru wrote:
> > > > > > > > > > Hi Kenneth,
> > > > > > > > > >
> > > > > > > > > > Sorry the tutorials are out of date and
we are trying to
> > fix
> > > > them
> > > > > > > with
> > > > > > > > > the 0.14 release.
> > > > > > > > > >
> > > > > > > > > > Shameera is close to bring these tutorials
back online,
> > some
> > > > > > > discussion
> > > > > > > > > here - http://markmail.org/thread/6dtvhd7posjosnvv
> > > > > > > > > >
> > > > > > > > > > Suresh
> > > > > > > > > >
> > > > > > > > > > On Oct 15, 2014, at 3:34 PM, K Yoshimoto
<kenneth@sdsc.edu
> > >
> > > > wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > I'm playing with airavata 0.14.  I
am going through some
> > of
> > > > the
> > > > > > > > > > > quickstart tutorials:
> > > > > > > > > > >
> > > > http://airavata.apache.org/documentation/quickstart-tutorials.html
> > > > > > > > > > >
> > > > > > > > > > > I'm at the step of firing up xbaya-gui,
but I'm not
> > seeing
> > > > > > > > > > > an obvious release distribution for
it.  Is it somewhere
> > > > > > > > > > > else in the tree?  I was looking in
release-artifacts,
> > but
> > > > > > > > > > > only see:
> > > > > > > > > > >
> > > > > > > > > > > release-artifacts$ ls
> > > > > > > > > > > apache-airavata-client-cpp-sdk-0.14-SNAPSHOT-bin.tar.gz
> > > > > > > > > > > apache-airavata-client-cpp-sdk-0.14-SNAPSHOT-bin.zip
> > > > > > > > > > > apache-airavata-client-java-sdk-0.14-SNAPSHOT-bin.tar.gz
> > > > > > > > > > > apache-airavata-client-java-sdk-0.14-SNAPSHOT-bin.zip
> > > > > > > > > > > apache-airavata-client-php-sdk-0.14-SNAPSHOT-bin.tar.gz
> > > > > > > > > > > apache-airavata-client-php-sdk-0.14-SNAPSHOT-bin.zip
> > > > > > > > > > > apache-airavata-server-0.14-SNAPSHOT-bin.tar.gz
> > > > > > > > > > > apache-airavata-server-0.14-SNAPSHOT-bin.zip
> > > > > > > > > > >
> > > > > > > > > > > Should I look someplace else?  Did
I miss a build step?
> > > > > > > > > > >
> > > > > > > > > > > Kenneth
> > > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > --
> > > > > > > > *Best Regards.*
> > > > > > > >
> > > > > > > > *Ishara Premadasa,*
> > > > > > > > http://isharapremadasa.blogspot.com
> > > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > --
> > > > > > Best Regards,
> > > > > > Shameera Rathnayaka.
> > > > > >
> > > > > > email: shameera AT apache.org , shameerainfo AT gmail.com
> > > > > > Blog : http://shameerarathnayaka.blogspot.com/
> > > >
> > >
> > >
> > >
> > > --
> > > Best Regards,
> > > Shameera Rathnayaka.
> > >
> > > email: shameera AT apache.org , shameerainfo AT gmail.com
> > > Blog : http://shameerarathnayaka.blogspot.com/
> >
> 
> 
> 
> -- 
> Best Regards,
> Shameera Rathnayaka.
> 
> email: shameera AT apache.org , shameerainfo AT gmail.com
> Blog : http://shameerarathnayaka.blogspot.com/

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