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From Lahiru Gunathilake <glah...@gmail.com>
Subject Re: Error during start up of Airavata
Date Mon, 07 Jul 2014 14:14:57 GMT
Hi Saminda,

Is there any sample that I can test a simple scenario ? Now I can build but
I can see app-catalog server is not starting because its disabled in
airavata-server.properties.

Please let me know when its ready.

Lahiru


On Mon, Jul 7, 2014 at 9:33 AM, Marlon Pierce <marpierc@iu.edu> wrote:

> git pull updated a pom.xml,  This time I got to the end but failed on
> "Airavata release artifacts".  It looks like there are more commits after I
> started the build, so I'll be patient.
>
> Marlon
>
>
> On 7/7/14, 9:25 AM, Suresh Marru wrote:
>
>> Looks like a missing dependency. Can u take a pull and retry?
>>
>> Suresh
>>
>> On Jul 7, 2014, at 9:19 AM, Marlon Pierce <marpierc@iu.edu> wrote:
>>
>>  Same problems for me.
>>>
>>> On 7/7/14, 9:08 AM, Lahiru Gunathilake wrote:
>>>
>>>> I get this error during building,
>>>>
>>>> [ERROR] Failed to execute goal
>>>> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
>>>> (default-compile) on project airavata-client-api: Compilation failure:
>>>> Compilation failure:
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[28,31]
>>>> package org.apache.airavata.api does not exist
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[56,21]
>>>> package Airavata does not exist
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[59,39]
>>>> package Airavata does not exist
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[28,31]
>>>> package org.apache.airavata.api does not exist
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[56,21]
>>>> package Airavata does not exist
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[59,39]
>>>> package Airavata does not exist
>>>> [ERROR] -> [Help 1]
>>>> [ERROR]
>>>> [ERROR] To see the full stack trace of the errors, re-run Maven with
>>>> the -e
>>>> switch.
>>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
>>>> [ERROR]
>>>> [ERROR] For more information about the errors and possible solutions,
>>>> please read the following articles:
>>>> [ERROR] [Help 1]
>>>> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
>>>> [ERROR]
>>>> [ERROR] After correcting the problems, you can resume the build with the
>>>> command
>>>> [ERROR]   mvn <goals> -rf :airavata-client-api
>>>>
>>>>
>>>>
>>>> On Mon, Jul 7, 2014 at 9:04 AM, Lahiru Gunathilake <glahiru@gmail.com>
>>>> wrote:
>>>>
>>>>  Hi Saminda,
>>>>>
>>>>> I got more updates just now. I will build again and see.
>>>>>
>>>>> Thanks
>>>>> Lahiru
>>>>>
>>>>>
>>>>> On Mon, Jul 7, 2014 at 8:45 AM, Saminda Wijeratne <samindaw@gmail.com>
>>>>> wrote:
>>>>>
>>>>>  hmm... I thought I fixed this issue yesterday. Do you have the latest
>>>>>> trunk?
>>>>>>
>>>>>>
>>>>>> On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <glahiru@gmail.com
>>>>>> >
>>>>>> wrote:
>>>>>>
>>>>>>  [ERROR] Error occurred while executing :  /* * * Licensed to the
>>>>>>> Apache
>>>>>>> Software Foundation (ASF) under one * or more contributor license
>>>>>>> agreements.  See the NOTICE file * distributed with this work
for
>>>>>>> additional information * regarding copyright ownership.  The
ASF
>>>>>>> licenses
>>>>>>> this file * to you under the Apache License, Version 2.0 (the
*
>>>>>>> "License");
>>>>>>> you may not use this file except in compliance * with the License.
>>>>>>>  You may
>>>>>>> obtain a copy of the License at * *
>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required
by
>>>>>>> applicable law or agreed to in writing, * software distributed
under
>>>>>>> the
>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES
OR
>>>>>>> CONDITIONS OF ANY * KIND, either express or implied.  See the
>>>>>>> License for
>>>>>>> the * specific language governing permissions and limitations
*
>>>>>>> under the
>>>>>>> License. * */  /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>> VARCHAR(255),
>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>> KEY(RESOURCE_ID) )
>>>>>>> java.lang.Exception: Error occurred while executing :  /* * *
>>>>>>> Licensed
>>>>>>> to the Apache Software Foundation (ASF) under one * or more
>>>>>>> contributor
>>>>>>> license agreements.  See the NOTICE file * distributed with this
>>>>>>> work for
>>>>>>> additional information * regarding copyright ownership.  The
ASF
>>>>>>> licenses
>>>>>>> this file * to you under the Apache License, Version 2.0 (the
*
>>>>>>> "License");
>>>>>>> you may not use this file except in compliance * with the License.
>>>>>>>  You may
>>>>>>> obtain a copy of the License at * *
>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required
by
>>>>>>> applicable law or agreed to in writing, * software distributed
under
>>>>>>> the
>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES
OR
>>>>>>> CONDITIONS OF ANY * KIND, either express or implied.  See the
>>>>>>> License for
>>>>>>> the * specific language governing permissions and limitations
*
>>>>>>> under the
>>>>>>> License. * */  /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>> VARCHAR(255),
>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>   at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>>   at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(
>>>>>>> DatabaseCreator.java:234)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>>   at
>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(
>>>>>>> AppCatalogInitUtil.java:80)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>>   at
>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>> at
>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>> ServerMain.java:266)
>>>>>>>   at
>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>> ServerMain.java:121)
>>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at
line
>>>>>>> 1,
>>>>>>> column 982.  Encountered: <EOF> after : "".
>>>>>>> at
>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>> getSQLException(Unknown
>>>>>>> Source)
>>>>>>>   at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>>   at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>> ... 9 more
>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error
at
>>>>>>> line 1, column 982.  Encountered: <EOF> after : "".
>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>> Source)
>>>>>>>   at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> parsePrepareError(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>> Source)
>>>>>>>   at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>> Source)
>>>>>>>   at
>>>>>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(
>>>>>>> Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>> Unknown
>>>>>>> Source)
>>>>>>>   at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>>>   ... 11 more
>>>>>>> [ERROR] Server Start Error:
>>>>>>> java.lang.RuntimeException: Database failure
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(
>>>>>>> AppCatalogInitUtil.java:87)
>>>>>>>   at
>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>>   at
>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>> ServerMain.java:266)
>>>>>>> at
>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>> ServerMain.java:121)
>>>>>>>   at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>>>>> Caused by: java.lang.Exception: Error occurred while executing
:  /*
>>>>>>> * *
>>>>>>> Licensed to the Apache Software Foundation (ASF) under one *
or more
>>>>>>> contributor license agreements.  See the NOTICE file * distributed
>>>>>>> with
>>>>>>> this work for additional information * regarding copyright
>>>>>>> ownership.  The
>>>>>>> ASF licenses this file * to you under the Apache License, Version
>>>>>>> 2.0 (the
>>>>>>> * "License"); you may not use this file except in compliance
* with
>>>>>>> the
>>>>>>> License.  You may obtain a copy of the License at * *
>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required
by
>>>>>>> applicable law or agreed to in writing, * software distributed
under
>>>>>>> the
>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES
OR
>>>>>>> CONDITIONS OF ANY * KIND, either express or implied.  See the
>>>>>>> License for
>>>>>>> the * specific language governing permissions and limitations
*
>>>>>>> under the
>>>>>>> License. * */  /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>> VARCHAR(255),
>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>   at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>>   at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(
>>>>>>> DatabaseCreator.java:234)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>>   at
>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(
>>>>>>> AppCatalogInitUtil.java:80)
>>>>>>> ... 5 more
>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at
line
>>>>>>> 1,
>>>>>>> column 982.  Encountered: <EOF> after : "".
>>>>>>> at
>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>> getSQLException(Unknown
>>>>>>> Source)
>>>>>>>   at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>>   at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>> ... 9 more
>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error
at
>>>>>>> line 1, column 982.  Encountered: <EOF> after : "".
>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>> Source)
>>>>>>>   at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> parsePrepareError(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>> Source)
>>>>>>>   at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>> Source)
>>>>>>>   at
>>>>>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(
>>>>>>> Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>> Unknown
>>>>>>> Source)
>>>>>>>   at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>>>   ... 11 more
>>>>>>> [INFO] Initiating client connection, con
>>>>>>>
>>>>>>> --
>>>>>>> System Analyst Programmer
>>>>>>> PTI Lab
>>>>>>> Indiana University
>>>>>>>
>>>>>>>  --
>>>>> System Analyst Programmer
>>>>> PTI Lab
>>>>> Indiana University
>>>>>
>>>>>
>>>>
>


-- 
System Analyst Programmer
PTI Lab
Indiana University

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