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From Chathuri Wimalasena <kamalas...@gmail.com>
Subject Re: Error during start up of Airavata
Date Mon, 07 Jul 2014 14:20:02 GMT
Hi Lahiru,

There is no separate app-catalog server now. App-catalog database will
start when airavata server starts. All the app-catalog API methods will be
at the same airavata-api.


On Mon, Jul 7, 2014 at 10:14 AM, Lahiru Gunathilake <glahiru@gmail.com>
wrote:

> Hi Saminda,
>
> Is there any sample that I can test a simple scenario ? Now I can build
> but I can see app-catalog server is not starting because its disabled in
> airavata-server.properties.
>
> Please let me know when its ready.
>
> Lahiru
>
>
> On Mon, Jul 7, 2014 at 9:33 AM, Marlon Pierce <marpierc@iu.edu> wrote:
>
>> git pull updated a pom.xml,  This time I got to the end but failed on
>> "Airavata release artifacts".  It looks like there are more commits after I
>> started the build, so I'll be patient.
>>
>> Marlon
>>
>>
>> On 7/7/14, 9:25 AM, Suresh Marru wrote:
>>
>>> Looks like a missing dependency. Can u take a pull and retry?
>>>
>>> Suresh
>>>
>>> On Jul 7, 2014, at 9:19 AM, Marlon Pierce <marpierc@iu.edu> wrote:
>>>
>>>  Same problems for me.
>>>>
>>>> On 7/7/14, 9:08 AM, Lahiru Gunathilake wrote:
>>>>
>>>>> I get this error during building,
>>>>>
>>>>> [ERROR] Failed to execute goal
>>>>> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
>>>>> (default-compile) on project airavata-client-api: Compilation failure:
>>>>> Compilation failure:
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[28,31]
>>>>> package org.apache.airavata.api does not exist
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[56,21]
>>>>> package Airavata does not exist
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[59,39]
>>>>> package Airavata does not exist
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[28,31]
>>>>> package org.apache.airavata.api does not exist
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[56,21]
>>>>> package Airavata does not exist
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[59,39]
>>>>> package Airavata does not exist
>>>>> [ERROR] -> [Help 1]
>>>>> [ERROR]
>>>>> [ERROR] To see the full stack trace of the errors, re-run Maven with
>>>>> the -e
>>>>> switch.
>>>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
>>>>> [ERROR]
>>>>> [ERROR] For more information about the errors and possible solutions,
>>>>> please read the following articles:
>>>>> [ERROR] [Help 1]
>>>>> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
>>>>> [ERROR]
>>>>> [ERROR] After correcting the problems, you can resume the build with
>>>>> the
>>>>> command
>>>>> [ERROR]   mvn <goals> -rf :airavata-client-api
>>>>>
>>>>>
>>>>>
>>>>> On Mon, Jul 7, 2014 at 9:04 AM, Lahiru Gunathilake <glahiru@gmail.com>
>>>>> wrote:
>>>>>
>>>>>  Hi Saminda,
>>>>>>
>>>>>> I got more updates just now. I will build again and see.
>>>>>>
>>>>>> Thanks
>>>>>> Lahiru
>>>>>>
>>>>>>
>>>>>> On Mon, Jul 7, 2014 at 8:45 AM, Saminda Wijeratne <samindaw@gmail.com
>>>>>> >
>>>>>> wrote:
>>>>>>
>>>>>>  hmm... I thought I fixed this issue yesterday. Do you have the latest
>>>>>>> trunk?
>>>>>>>
>>>>>>>
>>>>>>> On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <
>>>>>>> glahiru@gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>  [ERROR] Error occurred while executing :  /* * * Licensed to
the
>>>>>>>> Apache
>>>>>>>> Software Foundation (ASF) under one * or more contributor
license
>>>>>>>> agreements.  See the NOTICE file * distributed with this
work for
>>>>>>>> additional information * regarding copyright ownership. 
The ASF
>>>>>>>> licenses
>>>>>>>> this file * to you under the Apache License, Version 2.0
(the *
>>>>>>>> "License");
>>>>>>>> you may not use this file except in compliance * with the
License.
>>>>>>>>  You may
>>>>>>>> obtain a copy of the License at * *
>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required
by
>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>> under the
>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES
OR
>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied.  See
the
>>>>>>>> License for
>>>>>>>> the * specific language governing permissions and limitations
*
>>>>>>>> under the
>>>>>>>> License. * */  /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>> VARCHAR(255),
>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>> java.lang.Exception: Error occurred while executing :  /*
* *
>>>>>>>> Licensed
>>>>>>>> to the Apache Software Foundation (ASF) under one * or more
>>>>>>>> contributor
>>>>>>>> license agreements.  See the NOTICE file * distributed with
this
>>>>>>>> work for
>>>>>>>> additional information * regarding copyright ownership. 
The ASF
>>>>>>>> licenses
>>>>>>>> this file * to you under the Apache License, Version 2.0
(the *
>>>>>>>> "License");
>>>>>>>> you may not use this file except in compliance * with the
License.
>>>>>>>>  You may
>>>>>>>> obtain a copy of the License at * *
>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required
by
>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>> under the
>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES
OR
>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied.  See
the
>>>>>>>> License for
>>>>>>>> the * specific language governing permissions and limitations
*
>>>>>>>> under the
>>>>>>>> License. * */  /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>> VARCHAR(255),
>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>>   at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>>>   at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(
>>>>>>>> DatabaseCreator.java:234)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>>>   at
>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>> initializeDB(AppCatalogInitUtil.java:80)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>>>   at
>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>>> at
>>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>>> ServerMain.java:266)
>>>>>>>>   at
>>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>>> ServerMain.java:121)
>>>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error
at line
>>>>>>>> 1,
>>>>>>>> column 982.  Encountered: <EOF> after : "".
>>>>>>>> at
>>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>>> getSQLException(Unknown
>>>>>>>> Source)
>>>>>>>>   at org.apache.derby.client.am.SqlException.getSQLException(
>>>>>>>> Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>>>   at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>>> ... 9 more
>>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical
error
>>>>>>>> at
>>>>>>>> line 1, column 982.  Encountered: <EOF> after : "".
>>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>>> Source)
>>>>>>>>   at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> parsePrepareError(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>>> Source)
>>>>>>>>   at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>> Source)
>>>>>>>>   at
>>>>>>>> org.apache.derby.client.net.NetStatement.
>>>>>>>> readPrepareDescribeOutput_(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>>> Unknown
>>>>>>>> Source)
>>>>>>>>   at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown
Source)
>>>>>>>>   ... 11 more
>>>>>>>> [ERROR] Server Start Error:
>>>>>>>> java.lang.RuntimeException: Database failure
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>> initializeDB(AppCatalogInitUtil.java:87)
>>>>>>>>   at
>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>>>   at
>>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>>> ServerMain.java:266)
>>>>>>>> at
>>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>>> ServerMain.java:121)
>>>>>>>>   at org.apache.airavata.server.ServerMain.main(ServerMain.
>>>>>>>> java:113)
>>>>>>>> Caused by: java.lang.Exception: Error occurred while executing
:
>>>>>>>>  /* * *
>>>>>>>> Licensed to the Apache Software Foundation (ASF) under one
* or more
>>>>>>>> contributor license agreements.  See the NOTICE file * distributed
>>>>>>>> with
>>>>>>>> this work for additional information * regarding copyright
>>>>>>>> ownership.  The
>>>>>>>> ASF licenses this file * to you under the Apache License,
Version
>>>>>>>> 2.0 (the
>>>>>>>> * "License"); you may not use this file except in compliance
* with
>>>>>>>> the
>>>>>>>> License.  You may obtain a copy of the License at * *
>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required
by
>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>> under the
>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES
OR
>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied.  See
the
>>>>>>>> License for
>>>>>>>> the * specific language governing permissions and limitations
*
>>>>>>>> under the
>>>>>>>> License. * */  /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>> VARCHAR(255),
>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>>   at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>>>   at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(
>>>>>>>> DatabaseCreator.java:234)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>>>   at
>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>> initializeDB(AppCatalogInitUtil.java:80)
>>>>>>>> ... 5 more
>>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error
at line
>>>>>>>> 1,
>>>>>>>> column 982.  Encountered: <EOF> after : "".
>>>>>>>> at
>>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>>> getSQLException(Unknown
>>>>>>>> Source)
>>>>>>>>   at org.apache.derby.client.am.SqlException.getSQLException(
>>>>>>>> Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>>>   at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>>> ... 9 more
>>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical
error
>>>>>>>> at
>>>>>>>> line 1, column 982.  Encountered: <EOF> after : "".
>>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>>> Source)
>>>>>>>>   at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> parsePrepareError(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>>> Source)
>>>>>>>>   at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>> Source)
>>>>>>>>   at
>>>>>>>> org.apache.derby.client.net.NetStatement.
>>>>>>>> readPrepareDescribeOutput_(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>>> Unknown
>>>>>>>> Source)
>>>>>>>>   at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown
Source)
>>>>>>>>   ... 11 more
>>>>>>>> [INFO] Initiating client connection, con
>>>>>>>>
>>>>>>>> --
>>>>>>>> System Analyst Programmer
>>>>>>>> PTI Lab
>>>>>>>> Indiana University
>>>>>>>>
>>>>>>>>  --
>>>>>> System Analyst Programmer
>>>>>> PTI Lab
>>>>>> Indiana University
>>>>>>
>>>>>>
>>>>>
>>
>
>
> --
> System Analyst Programmer
> PTI Lab
> Indiana University
>

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