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From Marlon Pierce <marpi...@iu.edu>
Subject Re: [SciGaP-Dev] CIPRES-Airavata integration proposal]]
Date Wed, 30 Jul 2014 20:52:35 GMT
Does it work if you use  mvn -o clean install?

What do you get when you run ls -tlr 
~/.m2/repository/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/ ?

Mine looks like this:

mpierce$ ls -tlr 
~/.m2/repository/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/
total 1432
-rw-r--r--  1 mpierce  staff    5044 Jul 22 15:28 
airavata-client-api-0.14-SNAPSHOT.pom
-rw-r--r--  1 mpierce  staff     241 Jul 30 16:09 
airavata-client-api-0.14-SNAPSHOT.pom.lastUpdated
-rw-r--r--  1 mpierce  staff     241 Jul 30 16:09 
airavata-client-api-0.14-SNAPSHOT.jar.lastUpdated
-rw-r--r--  1 mpierce  staff     721 Jul 30 16:11 maven-metadata-local.xml
-rw-r--r--  1 mpierce  staff  704373 Jul 30 16:11 
airavata-client-api-0.14-SNAPSHOT.jar
-rw-r--r--  1 mpierce  staff     206 Jul 30 16:11 _maven.repositories
-rw-r--r--  1 mpierce  staff     231 Jul 30 16:49 resolver-status.properties


On 7/30/14, 4:45 PM, K Yoshimoto wrote:
> I get a different error now:
>
> java-client-samples$ mvn clean install -U -DskipTests=true -f pom.xml
> [INFO] Scanning for projects...
> [INFO]
> [INFO] ------------------------------------------------------------------------
> [INFO] Building Airavata Client Samples 0.14-SNAPSHOT
> [INFO] ------------------------------------------------------------------------
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-data-models/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-api/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-model-utils/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-common-utils/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/commons/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/airavata-client-api-0.14-SNAPSHOT.pom
> [WARNING] The POM for org.apache.airavata:airavata-client-api:jar:0.14-SNAPSHOT is missing, no dependency information available
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-gfac-schema-utils/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-jpa-registry/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/registry/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-registry-api/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-workflow-execution-context/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-credential-store/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-registry-cpi/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-api-stubs/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-configuration/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-configuration/0.14-SNAPSHOT/maven-metadata.xml
> Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/airavata-client-api-0.14-SNAPSHOT.jar
> [INFO] ------------------------------------------------------------------------
> [INFO] BUILD FAILURE
> [INFO] ------------------------------------------------------------------------
> [INFO] Total time: 6.780s
> [INFO] Finished at: Wed Jul 30 13:43:44 PDT 2014
> [INFO] Final Memory: 8M/148M
> [INFO] ------------------------------------------------------------------------
> [ERROR] Failed to execute goal on project airavata-client-samples: Could not resolve dependencies for project org.apache.airavata:airavata-client-samples:jar:0.14-SNAPSHOT: Could not find artifact org.apache.airavata:airavata-client-api:jar:0.14-SNAPSHOT in apache.snapshots (http://repository.apache.org/snapshots) -> [Help 1]
> [ERROR]
> [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
> [ERROR]
> [ERROR] For more information about the errors and possible solutions, please read the following articles:
> [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
>
>
> On Wed, Jul 30, 2014 at 04:20:01PM -0400, Marlon Pierce wrote:
>> Hi Kenneth--
>>
>> You should first build the entire Airavata project (mvn clean install at
>> the top level).  This should fix the missing dependency problems you see
>> below. You can then do the java-client-samples only build as often as
>> you want from there.
>>
>> I just verified this, but let us know if you have problems. The build
>> took ~6 minutes on my laptop over wireless, but your first build may
>> take a little longer as you'll need additional jars.
>>
>> Marlon
>>
>> On 7/30/14, 4:05 PM, K Yoshimoto wrote:
>>> I wanted to play a bit more with the existing java client examples,
>>> in parallel with the new ones that are being written.  I tried
>>> building them but got an error about missing files.
>>> This was run from airavata-api/airavata-client-sdks/java-client-samples.
>>>
>>>
>>> mvn clean install -DskipTests=true -f pom.xml[INFO] Scanning for
>>> projects...
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [INFO] Building Airavata Client Samples
>>> [INFO]    task-segment: [clean, install]
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [INFO] [clean:clean {execution: default-clean}]
>>> [debug] execute contextualize
>>> [INFO] [resources:copy-resources {execution: copy-resources}]
>>> [INFO] Using 'UTF-8' encoding to copy filtered resources.
>>> [INFO] skip non existing resourceDirectory
>>> /media/785F-C62B/scigap/phpclientsamples/airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/assembly/dist
>>> [INFO] [remote-resources:process {execution: default}]
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-data-models/0.14-SNAPSHOT/airavata-data-models-0.14-SNAPSHOT.pom
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-data-models:pom:0.14-SNAPSHOT' in repository
>>> apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-model-utils/0.14-SNAPSHOT/airavata-model-utils-0.14-SNAPSHOT.pom
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-model-utils:pom:0.14-SNAPSHOT' in repository
>>> apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-common-utils/0.14-SNAPSHOT/airavata-common-utils-0.14-SNAPSHOT.pom
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-common-utils:pom:0.14-SNAPSHOT' in
>>> repository apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/airavata-client-api-0.14-SNAPSHOT.pom
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-client-api:pom:0.14-SNAPSHOT' in repository
>>> apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-gfac-schema-utils/0.14-SNAPSHOT/airavata-gfac-schema-utils-0.14-SNAPSHOT.pom
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-gfac-schema-utils:pom:0.14-SNAPSHOT' in
>>> repository apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-jpa-registry/0.14-SNAPSHOT/airavata-jpa-registry-0.14-SNAPSHOT.pom
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-jpa-registry:pom:0.14-SNAPSHOT' in
>>> repository apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-api-stubs/0.14-SNAPSHOT/airavata-api-stubs-0.14-SNAPSHOT.pom
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-api-stubs:pom:0.14-SNAPSHOT' in repository
>>> apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-configuration/0.14-SNAPSHOT/airavata-client-configuration-0.14-SNAPSHOT.pom
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-client-configuration:pom:0.14-SNAPSHOT' in
>>> repository apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-data-models/0.14-SNAPSHOT/airavata-data-models-0.14-SNAPSHOT.jar
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-data-models:jar:0.14-SNAPSHOT' in repository
>>> apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-model-utils/0.14-SNAPSHOT/airavata-model-utils-0.14-SNAPSHOT.jar
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-model-utils:jar:0.14-SNAPSHOT' in repository
>>> apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-common-utils/0.14-SNAPSHOT/airavata-common-utils-0.14-SNAPSHOT.jar
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-common-utils:jar:0.14-SNAPSHOT' in
>>> repository apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/airavata-client-api-0.14-SNAPSHOT.jar
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-client-api:jar:0.14-SNAPSHOT' in repository
>>> apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-gfac-schema-utils/0.14-SNAPSHOT/airavata-gfac-schema-utils-0.14-SNAPSHOT.jar
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-gfac-schema-utils:jar:0.14-SNAPSHOT' in
>>> repository apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-jpa-registry/0.14-SNAPSHOT/airavata-jpa-registry-0.14-SNAPSHOT.jar
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-jpa-registry:jar:0.14-SNAPSHOT' in
>>> repository apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-api-stubs/0.14-SNAPSHOT/airavata-api-stubs-0.14-SNAPSHOT.jar
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-api-stubs:jar:0.14-SNAPSHOT' in repository
>>> apache.snapshots (http://repository.apache.org/snapshots)
>>> Downloading:
>>> http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-configuration/0.14-SNAPSHOT/airavata-client-configuration-0.14-SNAPSHOT.jar
>>> [INFO] Unable to find resource
>>> 'org.apache.airavata:airavata-client-configuration:jar:0.14-SNAPSHOT' in
>>> repository apache.snapshots (http://repository.apache.org/snapshots)
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [ERROR] BUILD ERROR
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [INFO] Failed to resolve dependencies for one or more projects in the
>>> reactor. Reason: Missing:
>>> ----------
>>> 1) org.apache.airavata:airavata-data-models:jar:0.14-SNAPSHOT
>>>
>>> On Thu, Jul 24, 2014 at 04:19:36PM -0400, Lahiru Gunathilake wrote:
>>>> This is very true, I can create bunch of features/todos in airavata based
>>>> on this email thread.
>>>>
>>>> And I will do that and follow up :-)
>>>>
>>>>
>>>> On Thu, Jul 24, 2014 at 4:15 PM, Miller, Mark <mmiller@sdsc.edu> wrote:
>>>>
>>>>> I wanted to chime in and say,  that's really the point of Kenneth's
>>>>> activity.
>>>>> We do not expect you all to be able to provide everything that a new
>>>>> developer will need to know. I find it super-efficient to make a credible
>>>>> first pass, and assume there will be holes. He is a test case to drive
>>>>> requirements and help create documentation for all who follow....
>>>>>
>>>>> Mark
>>>>>
>>>>> -----Original Message-----
>>>>> From: Marlon Pierce [mailto:marpierc@iu.edu]
>>>>> Sent: Thursday, July 24, 2014 12:50 PM
>>>>> To: Yoshimoto, Kenneth; dev@airavata.apache.org
>>>>> Cc: dev@scigap.org
>>>>> Subject: Re: [SciGaP-Dev] CIPRES-Airavata integration proposal]]
>>>>>
>>>>> It's in airavata-api/thrift-interface-descriptions/ in your checkout, and
>>>>> in
>>>>> https://github.com/apache/airavata/tree/master/airavata-api/thrift-interface-descriptions
>>>>> on github.
>>>>>
>>>>> "You should dig around in the API to solve your problems" is not my
>>>>> preferred response.  We just don't have all the examples we need. Your
>>>>> feedback and contributions of use cases and scripts will help us pull
>>>>> these
>>>>> together.
>>>>>
>>>>> Marlon
>>>>>
>>>>> On 7/24/14, 3:44 PM, K Yoshimoto wrote:
>>>>>> Thanks, Marlon.  Where do I find experimentModel.thrift?
>>>>>>
>>>>>> On Thu, Jul 24, 2014 at 03:36:49PM -0400, Marlon Pierce wrote:
>>>>>>> Note in general that the PHP scripts are just illustrative and don't
>>>>>>> show everything.  However, you do have access to everything in the
>>>>>>> API in these scripts if you modify them.
>>>>>>>
>>>>>>> Maybe the best way to see what can be done is to look at the Thrift
>>>>>>> models. In this case, the experimentModel.thrift has the complete
>>>>>>> description.  These are all programmatically available in PHP.
>>>>>>>
>>>>>>>
>>>>>>> Marlon
>>>>>>>
>>>>>>>
>>>>>>> On 7/24/14, 3:31 PM, Singh, Raminder jeet wrote:
>>>>>>>> Kenneth,
>>>>>>>>
>>>>>>>> It looks like your application id is NULL.  Can you please look into
>>>>>>>> your sample experiment create/launch code? Ideally experiment
>>>>>>>> validator should though such exception to the user if application id
>>>>>>>> is not set. I will look into the validation code. I am working to
>>>>>>>> get experiment errors using a function call.
>>>>>>>>
>>>>>>>>> php getExperiment.php pwdtest_e08d60fb-62e9-4d54-bfe4-8688d894585d
>>>>>>>> object(Airavata\Model\Workspace\Experiment\Experiment)#6 (18) {
>>>>>>>>     ["experimentID"]=>
>>>>>>>>     string(44) "pwdtest_e08d60fb-62e9-4d54-bfe4-8688d894585d"
>>>>>>>>     ["projectID"]=>
>>>>>>>>     string(48) "kennethtest_deebd5c1-2b77-481b-a01c-9c8213cdc560"
>>>>>>>>     ["creationTime"]=>
>>>>>>>>     int(1406155998504)
>>>>>>>>     ["userName"]=>
>>>>>>>>     string(7) "kenneth"
>>>>>>>>     ["name"]=>
>>>>>>>>     string(7) "pwdtest"
>>>>>>>>     ["description"]=>
>>>>>>>>     NULL
>>>>>>>>     ["applicationId"]=>
>>>>>>>>     NULL
>>>>>>>>     ["applicationVersion"]=>
>>>>>>>>     NULL
>>>>>>>>
>>>>>>>> Thanks
>>>>>>>> Raminder
>>>>>>>>
>>>>>>>>
>>>>>>>> On Jul 24, 2014, at 2:36 PM, K Yoshimoto <kenneth@sdsc.edu> wrote:
>>>>>>>>
>>>>>>>>> I took a look through:
>>>>>>>>> RegisterSampleApplications.java
>>>>>>>>> RegisterSampleApplicationsUtils.java
>>>>>>>>>
>>>>>>>>> I see the examples for setting up the various apps and compute hosts.
>>>>>>>>>
>>>>>>>>> some questions:
>>>>>>>>> - is there an equivalent php sample set for doing this?
>>>>>>>>> - what's the easiest way to build the java samples, if those have
>>>>>>>>>    more example coverage than the php samples?
>>>>>>>>> - is there a document for supported strings for
>>>>> resourceJobManagerType?
>>>>>>>>> On Wed, Jul 23, 2014 at 10:45:12PM -0400, Lahiru Gunathilake wrote:
>>>>>>>>>> Did you have a look in to RegisterSampleApplications.java class ?
>>>>>>>>>>
>>>>>>>>>> registerXSEDEHosts method is registering bigred2.uits.iu.edu and
>>>>>>>>>> its an ssh host, but in your case your job manager type will be
>>>>>>>>>> FORK.
>>>>>>>>>>
>>>>>>>>>> If you can connect to this head node using ssh protocol airavata
>>>>>>>>>> should work if its gsissh then we do not support it at this point.
>>>>>>>>>> Configure your ssh key configurations in
>>>>>>>>>> airavata-server.properties (either username password or keys) or
>>>>>>>>>> You can store these information to the credential store and parse
>>>>>>>>>> the tokenId generated during credential storing and use that token
>>>>>>>>>> along the request.
>>>>>>>>>>
>>>>>>>>>> ################# ---------- For ssh key pair authentication
>>>>>>>>>> ------------------- ################ #public.ssh.key=/path to
>>>>>>>>>> public key for ssh #ssh.username=username for ssh connection
>>>>>>>>>> #private.ssh.key=/path to private key file for ssh
>>>>>>>>>> #ssh.keypass=passphrase for the private key
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> ################# ---------- For ssh key pair authentication
>>>>>>>>>> ------------------- ################ #ssh.username=username for
>>>>>>>>>> ssh connection #ssh.password=Password for ssh connection
>>>>>>>>>>
>>>>>>>>>> I will try to do the same thing in stampede and get back to you.
>>>>>>>>>>
>>>>>>>>>> Regards
>>>>>>>>>> Lahiru
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Jul 23, 2014, at 7:05 PM, K Yoshimoto wrote:
>>>>>>>>>>
>>>>>>>>>>> Great info!  How do I register a host as a non-hpc resource?
>>>>>>>>>>> I didn't see an obvious variable name in the
>>>>>>>>>>> registerComputeResource.php example script.
>>>>>>>>>>>
>>>>>>>>>>> On Wed, Jul 23, 2014 at 01:56:51PM -0400, Lahiru Gunathilake wrote:
>>>>>>>>>>>> On Jul 23, 2014, at 1:49 PM, K Yoshimoto wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> Hi, just following up on this query.  Could someone send a
>>>>>>>>>>>>> step-by-step on registering a new app and using it in an
>>>>>>>>>>>>> experiment?
>>>>>>>>>>>> Look at this class RegisterSampleApplications, Suresh is working
>>>>>>>>>>>> on the experiment creation code and soon it will be committed.
>>>>>>>>>>>>> Is there
>>>>>>>>>>>>> a way to specify that an app runs on the login node rather than
>>>>>>>>>>>>> in batch?
>>>>>>>>>>>> If you register the same host as a non-hpc resource then it will
>>>>>>>>>>>> be like a norma exec otherwise we create a PBS script and submit
>>>>>>>>>>>> the job to the job-manager.
>>>>>>>>>>>>> Also, could someone point me to the Take 1 integration code
>>>>>>>>>>>>> that Saminda developed?
>>>>>>>>>>>> No idea about this.
>>>>>>>>>>>>> Kenneth
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Fri, Jul 18, 2014 at 01:28:00PM -0700, K Yoshimoto wrote:
>>>>>>>>>>>>>> I can registerApplicationModule.php now.
>>>>>>>>>>>>>> registerApplicationInterface.php fails, even when I comment
>>>>>>>>>>>>>> out the disable().  What is the proper way to put in a new
>>>>>>>>>>>>>> Application?  Is there a way to specify an application that
>>>>>>>>>>>>>> runs directly on the submit node, rather than through a batch
>>>>>>>>>>>>>> job?
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On Fri, Jul 18, 2014 at 12:24:08PM -0400, Lahiru Gunathilake
>>>>> wrote:
>>>>>>>>>>>>>>> My plan is to use jobname to filter monitoring with an OR
>>>>> condition.
>>>>>>>>>>>>>>> Meantime I can experiment the two phase way of job submission
>>>>>>>>>>>>>>> where I can set the job Id.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> On Fri, Jul 18, 2014 at 12:12 PM, Lahiru Gunathilake
>>>>>>>>>>>>>>> <glahiru@gmail.com>
>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Verifying valid submit host (login4)...OK
>>>>>>>>>>>>>>>>>>> --> Verifying valid jobname...OK Enforcing max jobs per
>>>>>>>>>>>>>>>>>>> --> user...OK Verifying availability of your home dir
>>>>>>>>>>>>>>>>>>> (/home1/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>> --> Verifying availability of your work dir
>>>>>>>>>>>>>>>>>>> (/work/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>> --> Verifying availability of your scratch dir
>>>>>>>>>>>>>>>>>>> (/scratch/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>> --> Verifying valid ssh keys...OK Verifying access to
>>>>>>>>>>>>>>>>>>> --> desired queue (normal)...OK Verifying job request is
>>>>>>>>>>>>>>>>>>> --> within current queue limits...OK Checking available
>>>>>>>>>>>>>>>>>>> --> allocation (TG-STA110014S)...
>>>>>>>>>>>>>>>> Reason for the in interesting state is above output doesn't
>>>>>>>>>>>>>>>> have the job Id returned. This is a known issue. We will
>>>>>>>>>>>>>>>> provide a fix to this issue very soon.
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> On Fri, Jul 18, 2014 at 12:07 PM, K Yoshimoto
>>>>>>>>>>>>>>>> <kenneth@sdsc.edu>
>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Sending to dev@airavata.org also.
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> On 7/16/14, 4:22 PM, K Yoshimoto wrote:
>>>>>>>>>>>>>>>>>>> I got the hello, world experiment to run! I also modified
>>>>>>>>>>>>>>>>>>> createExperiment.php to play with different inputs.  That
>>>>>>>>>>>>>>>>>>> worked fine.
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> I was trying to create a new application with
>>>>>>>>>>>>>>>>>>> registerApplicationModule.php but got an error:
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> php registerApplicationModule.php pwd 1.0 'print working
>>>>>>>>>>>>>>>>>>> directory'
>>>>>>>>>>>>>>>>>>> Airavata System Exception: Error while adding application
>>>>>>>>>>>>>>>>>>> module.
>>>>>>>>>>>>>>>>>>> More info :
>>>>>>>>>>>>>>>>>>> org.airavata.appcatalog.cpi.AppCatalogException:
>>>>>>>>>>>>>>>>>>> <openjpa-2.2.0-r422266:1244990 fatal general error>
>>>>>>>>>>>>>>>>>>> org.apache.openjpa.persistence.PersistenceException: The
>>>>>>>>>>>>>>>>>>> last packet successfully received from the server was
>>>>>>>>>>>>>>>>>>> 197,463,645 milliseconds ago.  The last packet sent
>>>>>>>>>>>>>>>>>>> successfully to the server was
>>>>>>>>>>>>>>>>>>> 197,463,646
>>>>>>>>>>>>>>>>>>> milliseconds ago. is longer than the server configured
>>>>>>>>>>>>>>>>>>> value of 'wait_timeout'. You should consider either
>>>>>>>>>>>>>>>>>>> expiring and/or testing connection validity before use in
>>>>>>>>>>>>>>>>>>> your application, increasing the server configured values
>>>>>>>>>>>>>>>>>>> for client timeouts, or using the Connector/J connection
>>>>>>>>>>>>>>>>>>> property 'autoReconnect=true' to avoid this problem.
>>>>>>>>>>>>>>>>>>> FailedObject: pwd_64d83246-dd86-40ab-9890-5c0492766dcc
>>>>>>>>>>>>>>>>>>> [org.apache.openjpa.util.StringId] [java.lang.String]
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> On Thu, Jul 10, 2014 at 02:55:21PM -0700, K Yoshimoto
>>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>> Okay, now I'm getting a really interesting job status:
>>>>>>>>>>>>>>>>>>>> "UNKNOWN".
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> john@anya
>>>>>>>>>>>>>>>>> :/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap
>>>>>>>>>>>>>>>>> i/airavata-client-sdks/airavata-php-sdk/src/main/resources/
>>>>>>>>>>>>>>>>> php-cli-samples$
>>>>>>>>>>>>>>>>>>>> php getExperimentStatus.php
>>>>>>>>>>>>>>>>>>>> kennethexp4_5855ec6f-651b-4e01-83d0-67fb5b852eb1
>>>>>>>>>>>>>>>>>>>> experiment status = LAUNCHED <br> john@anya
>>>>>>>>>>>>>>>>> :/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap
>>>>>>>>>>>>>>>>> i/airavata-client-sdks/airavata-php-sdk/src/main/resources/
>>>>>>>>>>>>>>>>> php-cli-samples$
>>>>>>>>>>>>>>>>>>>> php getExperimentStatus.php
>>>>>>>>>>>>>>>>>>>> kennethexp4_5855ec6f-651b-4e01-83d0-67fb5b852eb1
>>>>>>>>>>>>>>>>>>>> experiment status = LAUNCHED <br> john@anya
>>>>>>>>>>>>>>>>> :/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap
>>>>>>>>>>>>>>>>> i/airavata-client-sdks/airavata-php-sdk/src/main/resources/
>>>>>>>>>>>>>>>>> php-cli-samples$
>>>>>>>>>>>>>>>>>>>> php getExperimentStatus.php
>>>>>>>>>>>>>>>>>>>> kennethexp4_5855ec6f-651b-4e01-83d0-67fb5b852eb1
>>>>>>>>>>>>>>>>>>>> experiment status = UNKNOWN <br> john@anya
>>>>>>>>>>>>>>>>> :/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap
>>>>>>>>>>>>>>>>> i/airavata-client-sdks/airavata-php-sdk/src/main/resources/
>>>>>>>>>>>>>>>>> php-cli-samples$
>>>>>>>>>>>>>>>>>>>> php getExperimentStatus.php
>>>>>>>>>>>>>>>>>>>> kennethexp4_5855ec6f-651b-4e01-83d0-67fb5b852eb1
>>>>>>>>>>>>>>>>>>>> experiment status = UNKNOWN <br> john@anya
>>>>>>>>>>>>>>>>> :/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap
>>>>>>>>>>>>>>>>> i/airavata-client-sdks/airavata-php-sdk/src/main/resources/
>>>>>>>>>>>>>>>>> php-cli-samples$
>>>>>>>>>>>>>>>>>>>> On Thu, Jul 10, 2014 at 05:37:12PM -0400, Raminderjeet
>>>>>>>>>>>>>>>>>>>> Singh
>>>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>>> I reported it already to TACC and working with them to
>>>>>>>>>>>>>>>>>>>>> get it resolved.
>>>>>>>>>>>>>>>>>>>>> This is an occasional issue. If you submit new job it
>>>>>>>>>>>>>>>>>>>>> will work.
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> Thanks
>>>>>>>>>>>>>>>>>>>>> Raminder
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> On Thu, Jul 10, 2014 at 5:15 PM, K Yoshimoto
>>>>>>>>>>>>>>>>>>>>> <kenneth@sdsc.edu>
>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>>>> I'm getting FAILED with stampede. Maybe allocation
>>>>>>>>>>>>>>>>>>>>>> check fails?
>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>> php getExperiment.php
>>>>>>>>>>>>>>>>>>>>>> kennethexp4_9acfe7f5-70ad-423e-9eee-602c09bc8ae4
>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>> ...
>>>>>>>>>>>>>>>>>>>>>>    [12]=>
>>>>>>>>>>>>>>>>>>>>>> object(Airavata\Model\Workspace\Experiment\ErrorDetail
>>>>>>>>>>>>>>>>>>>>>> s)#74
>>>>>>>>>>>>>>>>>>>>>> (9) {
>>>>>>>>>>>>>>>>>>>>>>      ["errorID"]=>
>>>>>>>>>>>>>>>>>>>>>>      string(4) "1077"
>>>>>>>>>>>>>>>>>>>>>>      ["creationTime"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(1405026660866)
>>>>>>>>>>>>>>>>>>>>>>      ["actualErrorMessage"]=>
>>>>>>>>>>>>>>>>>>>>>>      string(792) "Error submitting the job to host
>>>>>>>>>>>>>>>>>>>>>> stampede.tacc.xsede.org message:
>>>>>>>>>>>>>>>>>>>>>>
>>>>> -----------------------------------------------------------------
>>>>>>>>>>>>>>>>>>>>>>              Welcome to the Stampede Supercomputer
>>>>>>>>>>>>>>>>>>>>>> ------------------------------------------------------
>>>>>>>>>>>>>>>>>>>>>> -----------
>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid submit host (login4)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid jobname...OK Enforcing max jobs
>>>>>>>>>>>>>>>>>>>>>> --> per user...OK Verifying availability of your home
>>>>>>>>>>>>>>>>>>>>>> --> dir
>>>>>>>>>>>>>>>>>>>>>> (/home1/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying availability of your work dir
>>>>>>>>>>>>>>>>>>>>>> (/work/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying availability of your scratch dir
>>>>>>>>>>>>>>>>>>>>>> (/scratch/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid ssh keys...OK Verifying access to
>>>>>>>>>>>>>>>>>>>>>> --> desired queue (normal)...OK Verifying job request
>>>>>>>>>>>>>>>>>>>>>> --> is within current queue limits...OK Checking
>>>>>>>>>>>>>>>>>>>>>> --> available allocation (TG-STA110014S)..."
>>>>>>>>>>>>>>>>>>>>>>      ["userFriendlyMessage"]=>
>>>>>>>>>>>>>>>>>>>>>>      NULL
>>>>>>>>>>>>>>>>>>>>>>      ["errorCategory"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(6)
>>>>>>>>>>>>>>>>>>>>>>      ["transientOrPersistent"]=>
>>>>>>>>>>>>>>>>>>>>>>      bool(false)
>>>>>>>>>>>>>>>>>>>>>>      ["correctiveAction"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(1)
>>>>>>>>>>>>>>>>>>>>>>      ["actionableGroup"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(2)
>>>>>>>>>>>>>>>>>>>>>>      ["rootCauseErrorIdList"]=>
>>>>>>>>>>>>>>>>>>>>>>      NULL
>>>>>>>>>>>>>>>>>>>>>>    }
>>>>>>>>>>>>>>>>>>>>>>    [13]=>
>>>>>>>>>>>>>>>>>>>>>> object(Airavata\Model\Workspace\Experiment\ErrorDetail
>>>>>>>>>>>>>>>>>>>>>> s)#75
>>>>>>>>>>>>>>>>>>>>>> (9) {
>>>>>>>>>>>>>>>>>>>>>>      ["errorID"]=>
>>>>>>>>>>>>>>>>>>>>>>      string(4) "1078"
>>>>>>>>>>>>>>>>>>>>>>      ["creationTime"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(1405026660866)
>>>>>>>>>>>>>>>>>>>>>>      ["actualErrorMessage"]=>
>>>>>>>>>>>>>>>>>>>>>>      string(792) "Error submitting the job to host
>>>>>>>>>>>>>>>>>>>>>> stampede.tacc.xsede.org message:
>>>>>>>>>>>>>>>>>>>>>>
>>>>> -----------------------------------------------------------------
>>>>>>>>>>>>>>>>>>>>>>              Welcome to the Stampede Supercomputer
>>>>>>>>>>>>>>>>>>>>>> ------------------------------------------------------
>>>>>>>>>>>>>>>>>>>>>> -----------
>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid submit host (login4)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid jobname...OK Enforcing max jobs
>>>>>>>>>>>>>>>>>>>>>> --> per user...OK Verifying availability of your home
>>>>>>>>>>>>>>>>>>>>>> --> dir
>>>>>>>>>>>>>>>>>>>>>> (/home1/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying availability of your work dir
>>>>>>>>>>>>>>>>>>>>>> (/work/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying availability of your scratch dir
>>>>>>>>>>>>>>>>>>>>>> (/scratch/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid ssh keys...OK Verifying access to
>>>>>>>>>>>>>>>>>>>>>> --> desired queue (normal)...OK Verifying job request
>>>>>>>>>>>>>>>>>>>>>> --> is within current queue limits...OK Checking
>>>>>>>>>>>>>>>>>>>>>> --> available allocation (TG-STA110014S)..."
>>>>>>>>>>>>>>>>>>>>>>      ["userFriendlyMessage"]=>
>>>>>>>>>>>>>>>>>>>>>>      NULL
>>>>>>>>>>>>>>>>>>>>>>      ["errorCategory"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(6)
>>>>>>>>>>>>>>>>>>>>>>      ["transientOrPersistent"]=>
>>>>>>>>>>>>>>>>>>>>>>      bool(false)
>>>>>>>>>>>>>>>>>>>>>>      ["correctiveAction"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(1)
>>>>>>>>>>>>>>>>>>>>>>      ["actionableGroup"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(2)
>>>>>>>>>>>>>>>>>>>>>>      ["rootCauseErrorIdList"]=>
>>>>>>>>>>>>>>>>>>>>>>      NULL
>>>>>>>>>>>>>>>>>>>>>>    }
>>>>>>>>>>>>>>>>>>>>>>    [14]=>
>>>>>>>>>>>>>>>>>>>>>> object(Airavata\Model\Workspace\Experiment\ErrorDetail
>>>>>>>>>>>>>>>>>>>>>> s)#76
>>>>>>>>>>>>>>>>>>>>>> (9) {
>>>>>>>>>>>>>>>>>>>>>>      ["errorID"]=>
>>>>>>>>>>>>>>>>>>>>>>      string(4) "1079"
>>>>>>>>>>>>>>>>>>>>>>      ["creationTime"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(1405026660866)
>>>>>>>>>>>>>>>>>>>>>>      ["actualErrorMessage"]=>
>>>>>>>>>>>>>>>>>>>>>>      string(792) "Error submitting the job to host
>>>>>>>>>>>>>>>>>>>>>> stampede.tacc.xsede.org message:
>>>>>>>>>>>>>>>>>>>>>>
>>>>> -----------------------------------------------------------------
>>>>>>>>>>>>>>>>>>>>>>              Welcome to the Stampede Supercomputer
>>>>>>>>>>>>>>>>>>>>>> ------------------------------------------------------
>>>>>>>>>>>>>>>>>>>>>> -----------
>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid submit host (login4)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid jobname...OK Enforcing max jobs
>>>>>>>>>>>>>>>>>>>>>> --> per user...OK Verifying availability of your home
>>>>>>>>>>>>>>>>>>>>>> --> dir
>>>>>>>>>>>>>>>>>>>>>> (/home1/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying availability of your work dir
>>>>>>>>>>>>>>>>>>>>>> (/work/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying availability of your scratch dir
>>>>>>>>>>>>>>>>>>>>>> (/scratch/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid ssh keys...OK Verifying access to
>>>>>>>>>>>>>>>>>>>>>> --> desired queue (normal)...OK Verifying job request
>>>>>>>>>>>>>>>>>>>>>> --> is within current queue limits...OK Checking
>>>>>>>>>>>>>>>>>>>>>> --> available allocation (TG-STA110014S)..."
>>>>>>>>>>>>>>>>>>>>>>      ["userFriendlyMessage"]=>
>>>>>>>>>>>>>>>>>>>>>>      NULL
>>>>>>>>>>>>>>>>>>>>>>      ["errorCategory"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(6)
>>>>>>>>>>>>>>>>>>>>>>      ["transientOrPersistent"]=>
>>>>>>>>>>>>>>>>>>>>>>      bool(false)
>>>>>>>>>>>>>>>>>>>>>>      ["correctiveAction"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(1)
>>>>>>>>>>>>>>>>>>>>>>      ["actionableGroup"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(2)
>>>>>>>>>>>>>>>>>>>>>>      ["rootCauseErrorIdList"]=>
>>>>>>>>>>>>>>>>>>>>>>      NULL
>>>>>>>>>>>>>>>>>>>>>>    }
>>>>>>>>>>>>>>>>>>>>>>    [15]=>
>>>>>>>>>>>>>>>>>>>>>> object(Airavata\Model\Workspace\Experiment\ErrorDetail
>>>>>>>>>>>>>>>>>>>>>> s)#77
>>>>>>>>>>>>>>>>>>>>>> (9) {
>>>>>>>>>>>>>>>>>>>>>>      ["errorID"]=>
>>>>>>>>>>>>>>>>>>>>>>      string(4) "1080"
>>>>>>>>>>>>>>>>>>>>>>      ["creationTime"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(1405026660866)
>>>>>>>>>>>>>>>>>>>>>>      ["actualErrorMessage"]=>
>>>>>>>>>>>>>>>>>>>>>>      string(792) "Error submitting the job to host
>>>>>>>>>>>>>>>>>>>>>> stampede.tacc.xsede.org message:
>>>>>>>>>>>>>>>>>>>>>>
>>>>> -----------------------------------------------------------------
>>>>>>>>>>>>>>>>>>>>>>              Welcome to the Stampede Supercomputer
>>>>>>>>>>>>>>>>>>>>>> ------------------------------------------------------
>>>>>>>>>>>>>>>>>>>>>> -----------
>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid submit host (login4)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid jobname...OK Enforcing max jobs
>>>>>>>>>>>>>>>>>>>>>> --> per user...OK Verifying availability of your home
>>>>>>>>>>>>>>>>>>>>>> --> dir
>>>>>>>>>>>>>>>>>>>>>> (/home1/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying availability of your work dir
>>>>>>>>>>>>>>>>>>>>>> (/work/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying availability of your scratch dir
>>>>>>>>>>>>>>>>>>>>>> (/scratch/01437/ogce)...OK
>>>>>>>>>>>>>>>>>>>>>> --> Verifying valid ssh keys...OK Verifying access to
>>>>>>>>>>>>>>>>>>>>>> --> desired queue (normal)...OK Verifying job request
>>>>>>>>>>>>>>>>>>>>>> --> is within current queue limits...OK Checking
>>>>>>>>>>>>>>>>>>>>>> --> available allocation (TG-STA110014S)..."
>>>>>>>>>>>>>>>>>>>>>>      ["userFriendlyMessage"]=>
>>>>>>>>>>>>>>>>>>>>>>      NULL
>>>>>>>>>>>>>>>>>>>>>>      ["errorCategory"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(6)
>>>>>>>>>>>>>>>>>>>>>>      ["transientOrPersistent"]=>
>>>>>>>>>>>>>>>>>>>>>>      bool(false)
>>>>>>>>>>>>>>>>>>>>>>      ["correctiveAction"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(1)
>>>>>>>>>>>>>>>>>>>>>>      ["actionableGroup"]=>
>>>>>>>>>>>>>>>>>>>>>>      int(2)
>>>>>>>>>>>>>>>>>>>>>>      ["rootCauseErrorIdList"]=>
>>>>>>>>>>>>>>>>>>>>>>      NULL
>>>>>>>>>>>>>>>>>>>>>>    }
>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>> On Thu, Jul 10, 2014 at 08:53:06PM +0000, Singh,
>>>>>>>>>>>>>>>>>>>>>> Raminder jeet wrote:
>>>>>>>>>>>>>>>>>>>>>>> We setup a new database on Tuesday. Everything
>>>>>>>>>>>>>>>>>>>>>>> created after that should
>>>>>>>>>>>>>>>>>>>>>> exist.
>>>>>>>>>>>>>>>>>>>>>>> Thanks
>>>>>>>>>>>>>>>>>>>>>>> Raminder
>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>> On Jul 10, 2014, at 4:47 PM, K Yoshimoto
>>>>>>>>>>>>>>>>>>>>>>> <kenneth@sdsc.edu>
>>>>>>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>> Thanks, Raminder.  Did the old experiment, project
>>>>>>>>>>>>>>>>>>>>>>>> and user get wiped out or should they still be
>>>>>>>>>>>>>>>>>>>>>>>> there?
>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>> On Thu, Jul 10, 2014 at 08:38:24PM +0000, Singh,
>>>>>>>>>>>>>>>>>>>>>>>> Raminder jeet
>>>>>>>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>>>>>>> Hi Kenneth,
>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>> Create and launch should work now. I added default
>>>>>>>>>>>>>>>>>>>>>>>>> values for
>>>>>>>>>>>>>>>>>>>>>> applicationid and hostid in createExperiment for Echo
>>>>>>>>>>>>>>>>>>>>>> application on Stampede. I updated launchExperiment
>>>>>>>>>>>>>>>>>>>>>> with a valid airavata token for experiment to work
>>>>>>>>>>>>>>>>>>>>>> well. Please let me know if you face any other issue.
>>>>>>>>>>>>>>>>>>>>>> I am also in process of testing other scripts.
>>>>>>>>>>>>>>>>>>>>>>>>> Thanks
>>>>>>>>>>>>>>>>>>>>>>>>> Raminder
>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>> On Jul 10, 2014, at 4:04 PM, Marlon Pierce
>>>>>>>>>>>>>>>>>>>>>>>>> <marpierc@iu.edu>
>>>>>>>>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>> There is a bug in script (API changed). Raminder
>>>>>>>>>>>>>>>>>>>>>>>>>> is working to fix
>>>>>>>>>>>>>>>>>>>>>> it now.
>>>>>>>>>>>>>>>>>>>>>>>>>> Marlon
>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>> On 7/10/14, 3:57 PM, K Yoshimoto wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>> I launched another one, and it's still in LAUNCHED.
>>>>>>>>>>>>>>>>>>>>>>>>>>> Is there a way for the gateway developer to
>>>>>>>>>>>>>>>>>>>>>>>>>>> retrieve a job id?
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>> john@anya
>>>>>>>>>>>>>>>>> :/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap
>>>>>>>>>>>>>>>>> i/airavata-client-sdks/airavata-php-sdk/src/main/resources/
>>>>>>>>>>>>>>>>> php-cli-samples$
>>>>>>>>>>>>>>>>>>>>>> php getExperimentStatus.php
>>>>>>>>>>>>>>>>>>>>>> kennethexp2_f161f3a5-04a8-4ee9-862c-918e383e852d
>>>>>>>>>>>>>>>>>>>>>>>>>>> experiment status = LAUNCHED <br> john@anya
>>>>>>>>>>>>>>>>> :/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap
>>>>>>>>>>>>>>>>> i/airavata-client-sdks/airavata-php-sdk/src/main/resources/
>>>>>>>>>>>>>>>>> php-cli-samples$
>>>>>>>>>>>>>>>>>>>>>> php getExperimentStatus.php
>>>>>>>>>>>>>>>>>>>>>> kennethexp2_f161f3a5-04a8-4ee9-862c-918e383e852d
>>>>>>>>>>>>>>>>>>>>>>>>>>> experiment status = LAUNCHED
>>>>>>>>>>>>>>>>>>>>>>>>>>> <br>
>>>>>>>>>>>>>>>>>>>>>>>>>>> john@anya
>>>>> :/media/mdhpss/scigap/phpclientsamples/airavata/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/php-cli-samples$
>>>>>>>>>>>>>>>>>>>>>> php getExperiment.php
>>>>>>>>>>>>>>>>>>>>>> kennethexp2_f161f3a5-04a8-4ee9-862c-918e383e852d
>>>>> object(Airavata\Model\Workspace\Experiment\Experiment)#6 (18) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["experimentID"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> string(48)
>>>>>>>>>>>>>>>>>>>>>>>>>>> "kennethexp2_f161f3a5-04a8-4ee9-862c-918e383e852d"
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["projectID"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> string(48)
>>>>>>>>>>>>>>>>>>>>>>>>>>> "kennethtest_721c9e67-846d-4081-b1db-a573e198ec01"
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["creationTime"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> int(1405021121026)
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["userName"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> string(7) "kenneth"
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["name"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> string(11) "kennethexp2"
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["description"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["applicationId"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> string(11) "SimpleEcho2"
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["applicationVersion"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["workflowTemplateId"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["workflowTemplateVersion"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["userConfigurationData"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\UserConfigurationData)#7
>>>>>>>>>>>>>>>>> (7)
>>>>>>>>>>>>>>>>>>>>>> {
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["airavataAutoSchedule"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> bool(false)
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["overrideManualScheduledParams"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> bool(false)
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["shareExperimentPublicly"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> bool(false)
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["computationalResourceScheduling"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\ComputationalResourceScheduling)#8
>>>>>>>>>>>>>>>>>>>>>> (9) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["resourceHostId"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     string(17) "trestles.sdsc.edu"
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["totalCPUCount"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(1)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["nodeCount"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(1)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["numberOfThreads"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(0)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["queueName"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     string(6) "normal"
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["wallTimeLimit"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(15)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["jobStartTime"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(566815272)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["totalPhysicalMemory"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(0)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["computationalProjectAccount"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["advanceInputDataHandling"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["advanceOutputDataHandling"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["qosParams"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["workflowExecutionInstanceId"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["experimentInputs"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> array(1) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> [0]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\DataObjectType)#9 (4)
>>>>>>>>>>>>>>>>>>>>>> {
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["key"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     string(10) "echo_input"
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["value"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     string(23) "echo_output=Hello World"
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["type"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(0)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["metaData"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["experimentOutputs"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> array(1) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> [0]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\DataObjectType)#10
>>>>>>>>>>>>>>>>>>>>>> (4) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["key"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     string(11) "echo_output"
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["value"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     string(0) ""
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["type"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(0)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["metaData"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["experimentStatus"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\ExperimentStatus)#11
>>>>>>>>>>>>>>>>>>>>>> (2) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["experimentState"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> int(3)
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["timeOfStateChange"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> int(1405021142702)
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["stateChangeList"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> array(1) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> [0]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\WorkflowNodeStatus)#12
>>>>>>>>>>>>>>>>>>>>>> (2) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["workflowNodeState"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(7)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["timeOfStateChange"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(1405021142334)
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["workflowNodeDetailsList"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> array(1) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> [0]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\WorkflowNodeDetails)#13
>>>>>>>>>>>>>>>>>>>>>> (10) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["nodeInstanceId"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     string(51)
>>>>>>>>>>>>>>>>>>>>>> "IDontNeedaNode_320649b3-450b-4bdb-89cf-70a95ccb817e"
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["creationTime"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(1405021142316)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["nodeName"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     string(14) "IDontNeedaNode"
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["executionUnit"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     int(1)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["executionUnitData"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["nodeInputs"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     array(0) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>     }
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["nodeOutputs"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     array(0) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>     }
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["workflowNodeStatus"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\WorkflowNodeStatus)#14
>>>>>>>>>>>>>>>>>>>>>> (2) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["workflowNodeState"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>       int(7)
>>>>>>>>>>>>>>>>>>>>>>>>>>>       ["timeOfStateChange"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>       int(1405021142334)
>>>>>>>>>>>>>>>>>>>>>>>>>>>     }
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["taskDetailsList"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     array(1) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>       [0]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\TaskDetails)#15
>>>>>>>>>>>>>>>>>>>>>> (14) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["taskID"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         string(51)
>>>>>>>>>>>>>>>>>>>>>> "IDontNeedaNode_c2f6d21f-cd12-45c3-814f-a9c903fa5bde"
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["creationTime"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["applicationId"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         string(11) "SimpleEcho2"
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["applicationVersion"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["applicationDeploymentId"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["applicationInputs"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         array(1) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>           [0]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\DataObjectType)#16 (4) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>             ["key"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>             string(10) "echo_input"
>>>>>>>>>>>>>>>>>>>>>>>>>>>             ["value"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>             string(23) "echo_output=Hello World"
>>>>>>>>>>>>>>>>>>>>>>>>>>>             ["type"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>             int(0)
>>>>>>>>>>>>>>>>>>>>>>>>>>>             ["metaData"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>             NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>>           }
>>>>>>>>>>>>>>>>>>>>>>>>>>>         }
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["applicationOutputs"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         array(1) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>           [0]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\DataObjectType)#17 (4) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>             ["key"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>             string(11) "echo_output"
>>>>>>>>>>>>>>>>>>>>>>>>>>>             ["value"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>             string(0) ""
>>>>>>>>>>>>>>>>>>>>>>>>>>>             ["type"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>             int(0)
>>>>>>>>>>>>>>>>>>>>>>>>>>>             ["metaData"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>             NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>>           }
>>>>>>>>>>>>>>>>>>>>>>>>>>>         }
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["taskScheduling"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\ComputationalResourceScheduling)#18
>>>>>>>>>>>>>>>>>>>>>> (9) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["resourceHostId"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>           string(17) "trestles.sdsc.edu"
>>>>>>>>>>>>>>>>>>>>>>>>>>>           ["totalCPUCount"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>           int(1)
>>>>>>>>>>>>>>>>>>>>>>>>>>>           ["nodeCount"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>           int(1)
>>>>>>>>>>>>>>>>>>>>>>>>>>>           ["numberOfThreads"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>           int(0)
>>>>>>>>>>>>>>>>>>>>>>>>>>>           ["queueName"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>           string(6) "normal"
>>>>>>>>>>>>>>>>>>>>>>>>>>>           ["wallTimeLimit"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>           int(15)
>>>>>>>>>>>>>>>>>>>>>>>>>>>           ["jobStartTime"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>           int(566815272)
>>>>>>>>>>>>>>>>>>>>>>>>>>>           ["totalPhysicalMemory"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>           int(0)
>>>>>>>>>>>>>>>>>>>>>>>>>>>           ["computationalProjectAccount"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>           NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>>         }
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["advancedInputDataHandling"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["advancedOutputDataHandling"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["taskStatus"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> object(Airavata\Model\Workspace\Experiment\TaskStatus)#19
>>>>>>>>>>>>>>>>>>>>>> (2) {
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["executionState"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>           int(12)
>>>>>>>>>>>>>>>>>>>>>>>>>>>           ["timeOfStateChange"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>           int(1405021142382)
>>>>>>>>>>>>>>>>>>>>>>>>>>>         }
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["jobDetailsList"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         array(0) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>         }
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["dataTransferDetailsList"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         array(0) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>         }
>>>>>>>>>>>>>>>>>>>>>>>>>>>         ["errors"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>         array(0) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>         }
>>>>>>>>>>>>>>>>>>>>>>>>>>>       }
>>>>>>>>>>>>>>>>>>>>>>>>>>>     }
>>>>>>>>>>>>>>>>>>>>>>>>>>>     ["errors"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>>     array(0) {
>>>>>>>>>>>>>>>>>>>>>>>>>>>     }
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>> ["errors"]=>
>>>>>>>>>>>>>>>>>>>>>>>>>>> NULL
>>>>>>>>>>>>>>>>>>>>>>>>>>> }
>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>> john@anya
>>>>> :/media/mdhpss/scigap/phpclientsamples/airavata/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/php-cli-samples$
>>>>>>>>>>>>>>>>>>>>>>>>>>> On Thu, Jul 10, 2014 at 03:32:03PM -0400, Marlon
>>>>> Pierce
>>>>>>>>>>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>> Yes, probably a casualty of our updates.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>> Marlon
>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>> On 7/10/14, 3:19 PM, K Yoshimoto wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> I launched a test experiment yesterday, but it
>>>>> hasn't
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> changed from
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> LAUNCHED status.  Should it go into running
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> fairly
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> quickly?
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> php getExperimentStatus.php
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> kennethexp1_5497b1a2-721e-4690-9e4c-e0f24693c5c1
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> experiment status = LAUNCHED
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> <br>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> On Thu, Jul 10, 2014 at 06:03:12AM -0400, Marlon
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Pierce wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> He'll still need his classpath set properly to
>>>>> run
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> them
>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >from the
>>>>>>>>>>>>>>>>>>>>>> command
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> line.  Do we have instructions for this?
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Also, the lowest level pom.xml file is
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> airavata/airavata-api//airavata-client-sdks/java-client-samples/pom.xml
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> so that is where to run "mvn clean install" if
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> recompiling
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> after
>>>>>>>>>>>>>>>>>>>>>> making
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> changes.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Or use an IDE to manage recompiles, I guess.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Marlon
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> On 7/9/14, 9:01 PM, Suresh Marru wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Hi Kenneth,
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Airavata uses Maven as the build system. Once
>>>>> you
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> checkout
>>>>>>>>>>>>>>>>>>>>>> Airavata, you
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> should be able to build "mvn clean install
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> -DskipTests=true -f
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> airavata-api/airavata-client-sdks/java-client-samples/pom.xml"
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> If you are building from git master, you may
>>>>> need to
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> build the
>>>>>>>>>>>>>>>>>>>>>> whole of
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> airavata repo. Alternatively, users are
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> provided
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> with
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> binaries.
>>>>>>>>>>>>>>>>>>>>>> And
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> changes to samples with release versions can be
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> build
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> without
>>>>>>>>>>>>>>>>>>>>>> having to
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> build the whole repo.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> As an example, if you modify samples within
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> https://github.com/apache/airavata/tree/airavata-0.12 you
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> can
>>>>>>>>>>>>>>>>>>>>>> just go to
>>>>>>>>>>>>>>>>>>>>>>
>>>>> airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
>>>>>>>>>>>>>>>>>>>>>> and build just the changed samples by running mvn clean
>>>>>>>>>>>>>>>>>>>>>> install
>>>>>>>>>>>>>>>>>>>>>> -DskipTests=true.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Long story short, release artifacts are
>>>>> published
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> to maven
>>>>>>>>>>>>>>>>>>>>>> central, so
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> building a module will pull the artifacts from
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> maven central
>>>>>>>>>>>>>>>>>>>>>> repo -
>>>>>>>>>>>>>>>>> http://search.maven.org/#search%7Cga%7C1%7Capache%20airavata
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Suresh
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> On Jul 9, 2014, at 7:38 PM, K Yoshimoto
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> <kenneth@sdsc.edu>
>>>>>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Another question:  is there a Makefile for the
>>>>> java
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> examples?
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> On Wed, Jul 09, 2014 at 04:32:21PM -0400,
>>>>> Suresh
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Marru
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Hi Kenneth,
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> I changed the script names to patch the API
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> function
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> names.
>>>>>>>>>>>>>>>>>>>>>> So it is
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> now
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> - registerComputeResource.php
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> I am going to finish up the Wiki articles [1]
>>>>> will
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> describe
>>>>>>>>>>>>>>>>>>>>>> all the
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> functions you can do and available samples.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Suresh
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [1] -
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> https://cwiki.apache.org/confluence/display/AIRAVATA/Airavata+API+PHP+Client+Samples
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> On Jul 9, 2014, at 4:25 PM, K Yoshimoto
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> <kenneth@sdsc.edu
>>>>>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> I did a git pull, and
>>>>> add-compute-resource.php
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> does
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> not seem
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> to be there anymore.  Should it still be
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> available?
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> On Thu, Jul 03, 2014 at 01:34:18PM -0700, K
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Yoshimoto
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Thanks, Marlon and Suresh.  I'll poke
>>>>> through
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> the app
>>>>>>>>>>>>>>>>>>>>>> catalog api
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> and try out the examples in the new README
>>>>> next
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> week.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Kenneth
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> On Thu, Jul 03, 2014 at 04:19:21PM -0400,
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Marlon Pierce
>>>>>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> In short, though, if a script in this
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> directory is
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> not in
>>>>>>>>>>>>>>>>>>>>>> the
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> README, it is using the App Catalog part
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> of
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> the API.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> add-compute-resource.php does some of what
>>>>> you
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> are
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> looking
>>>>>>>>>>>>>>>>>>>>>> for
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> below. I'll make some quick updates to the
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> readme.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Marlon
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> On 7/3/14, 4:06 PM, Suresh Marru wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Hi Kenneth,
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> I plan to modify the README to describe
>>>>> the
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> use cases
>>>>>>>>>>>>>>>>>>>>>> including the
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> one you mention below. Will try to get
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> all
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> that done
>>>>>>>>>>>>>>>>>>>>>> before Monday.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Suresh
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> On Jul 3, 2014, at 4:04 PM, Marlon Pierce
>>>>> <
>>>>>>>>>>>>>>>>>>>>>> marpierc@iu.edu> wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Hi Kenneth--
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> At the API level, those are part of the
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Application
>>>>>>>>>>>>>>>>>>>>>> Catalog.  At
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> the implementation level, they are done
>>>>> by
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> GFAC
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> plugins
>>>>>>>>>>>>>>>>>>>>>> (GSI-SSH
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> plugin in this case).   These are new
>>>>> (not
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> yet in the
>>>>>>>>>>>>>>>>>>>>>> README), may
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> be missing some examples.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Marlon
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> On 7/3/14, 3:45 PM, K Yoshimoto wrote:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Are there methods in the API for
>>>>> creating
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> working
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> dirs
>>>>>>>>>>>>>>>>>>>>>> on the
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> compute resource, staging input data,
>>>>> and
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> running
>>>>>>>>>>>>>>>>>>>>>> submit wrapper
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> scripts?
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> I'm looking at:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> https://github.com/SciGaP/Airavata-PHP-Client-Samples/blob/master/client-samples/README-PHP-CLI-Examples.txt
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> and browsing through:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>>>>> airavata/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Airavata/API/Airavata.php
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> but it looks like the interactions with
>>>>> the
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> compute
>>>>>>>>>>>>>>>>>>>>>> resource are
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> deeper
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> down...
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> To unsubscribe from this group and stop
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>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>>> System Analyst Programmer
>>>>>>>>>>>>>>>> PTI Lab
>>>>>>>>>>>>>>>> Indiana University
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>> System Analyst Programmer
>>>>>>>>>>>>>>> PTI Lab
>>>>>>>>>>>>>>> Indiana University
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>>>> -- 
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