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From "Raminderjeet Singh (JIRA)" <j...@apache.org>
Subject [jira] [Resolved] (AIRAVATA-603) Exceptions thrown when accessing workflow information through Provanance Manager
Date Fri, 28 Mar 2014 20:47:21 GMT

     [ https://issues.apache.org/jira/browse/AIRAVATA-603?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Raminderjeet Singh resolved AIRAVATA-603.
-----------------------------------------

       Resolution: Fixed
    Fix Version/s: 0.11

works with 0.11 api. Testing need to done with 0.12 and create new issues

> Exceptions thrown when accessing workflow information through Provanance Manager
> --------------------------------------------------------------------------------
>
>                 Key: AIRAVATA-603
>                 URL: https://issues.apache.org/jira/browse/AIRAVATA-603
>             Project: Airavata
>          Issue Type: Bug
>          Components: Airavata Client
>    Affects Versions: 0.5
>         Environment: Airavata 0.5
> Mysql 
>            Reporter: Heshan Suriyaarachchi
>             Fix For: 0.11
>
>
> I have a web app that is using Airavata API to access Provenance information. I'm getting
following exception when retrieving information from the backend.
> 68  airavata_data  INFO   [http-bio-9080-exec-1] openjpa.Runtime - Starting OpenJPA 2.2.0
> 167  airavata_data  INFO   [http-bio-9080-exec-1] openjpa.jdbc.JDBC - Using dictionary
class "org.apache.openjpa.jdbc.sql.MySQLDictionary".
> 506  airavata_data  WARN   [http-bio-9080-exec-1] openjpa.Enhance - Creating subclass
for "[class org.apache.airavata.persistance.registry.jpa.model.Gram_Data, class org.apache.airavata.persistance.registry.jpa.model.Experiment_Data,
class org.apache.airavata.persistance.registry.jpa.model.Application_Descriptor, class org.apache.airavata.persistance.registry.jpa.model.Experiment,
class org.apache.airavata.persistance.registry.jpa.model.Workflow_Data, class org.apache.airavata.persistance.registry.jpa.model.Project,
class org.apache.airavata.persistance.registry.jpa.model.Configuration, class org.apache.airavata.persistance.registry.jpa.model.User_Workflow,
class org.apache.airavata.persistance.registry.jpa.model.Host_Descriptor, class org.apache.airavata.persistance.registry.jpa.model.Users,
class org.apache.airavata.persistance.registry.jpa.model.Gateway_Worker, class org.apache.airavata.persistance.registry.jpa.model.Service_Descriptor,
class org.apache.airavata.persistance.registry.jpa.model.Published_Workflow, class org.apache.airavata.persistance.registry.jpa.model.Experiment_Metadata,
class org.apache.airavata.persistance.registry.jpa.model.Gateway, class org.apache.airavata.persistance.registry.jpa.model.Node_Data]".
This means that your application will be less efficient and will consume more memory than
it would if you ran the OpenJPA enhancer. Additionally, lazy loading will not be available
for one-to-one and many-to-one persistent attributes in types using field access; they will
be loaded eagerly instead.
> org.xml.sax.SAXException: Fatal Error: URI=null Line=1: Content is not allowed in prolog.
> 	at org.apache.axis2.util.XMLUtils$ParserErrorHandler.fatalError(XMLUtils.java:389)
> 	at org.apache.xerces.util.ErrorHandlerWrapper.fatalError(Unknown Source)
> 	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
> 	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
> 	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
> 	at org.apache.xerces.impl.XMLScanner.reportFatalError(Unknown Source)
> 	at org.apache.xerces.impl.XMLDocumentScannerImpl$PrologDispatcher.dispatch(Unknown Source)
> 	at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)
> 	at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
> 	at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
> 	at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
> 	at org.apache.xerces.parsers.DOMParser.parse(Unknown Source)
> 	at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Source)
> 	at org.apache.axis2.util.XMLUtils.newDocument(XMLUtils.java:204)
> 	at org.apache.axis2.util.XMLUtils.newDocument(XMLUtils.java:217)
> 	at org.apache.airavata.xbaya.util.XBayaUtil.getIOParameterData(XBayaUtil.java:332)
> 	at org.apache.jsp.monitor_005fexperiment_005fresult_jsp._jspService(monitor_005fexperiment_005fresult_jsp.java:172)
> 	at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
> 	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
> 	at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:432)
> 	at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390)
> 	at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334)
> 	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
> 	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
> 	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
> 	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
> 	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
> 	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
> 	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
> 	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
> 	at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
> 	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
> 	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
> 	at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1001)
> 	at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:579)
> 	at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:312)
> 	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
> 	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
> 	at java.lang.Thread.run(Thread.java:662)



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