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From Nadeem Anjum <nadeem.cs....@gmail.com>
Subject Re: Error while building airavata
Date Wed, 05 Mar 2014 21:27:20 GMT
I have been able to successfully build by commenting out integration tests
from the top level pom
Thanks.


On Thu, Mar 6, 2014 at 1:40 AM, Saminda Wijeratne <samindaw@gmail.com>wrote:

> The integration tests in the trunk are broken at the moment. We are
> working on fixing them [1].
>
> 1. https://issues.apache.org/jira/browse/AIRAVATA-1053
>
>
> On Wed, Mar 5, 2014 at 1:59 PM, Marlon Pierce <marpierc@iu.edu> wrote:
>
>> Clarification: I was able to build 0.11 from source using mvn clean
>> install -o -Dmaven.test.skip=true
>>
>>
>> Marlon
>>
>> On 3/5/14 1:58 PM, Marlon Pierce wrote:
>> > I had no problems with the build with -Dmaven.tests.skip=true but needed
>> > to use the -o flag, as discussed below.  You can skip the integration
>> > tests by commenting this out from the top level pom. Please file a bug
>> > in Jira for this.
>> >
>> > Release 0.11 had some dependencies on optional jars that were downloaded
>> > from an Archiva server (community.ucs.indiana.edu).  This got hacked
>> > because of a security flaw in the Archiva release, so we took it down.
>> > This was bad practice in any case.
>> >
>> > Depending on what you are doing, you may be better off looking at the
>> > trunk.  Release 0.12 is coming.
>> >
>> > Marlon
>> >
>> >
>> > On 3/5/14 1:32 PM, Nadeem Anjum wrote:
>> >> Hi Marlon,
>> >>
>> >> I had built with "mvn clean install -Dmaven.test.skip=true" itself.
>> This
>> >> skips the other tests, but still builds Airavata Integration tests.
>> >>
>> >> Moreover, I am building the 0.11 release, that should not have the
>> recent
>> >> changes right?
>> >>
>> >> Thanks,
>> >> Nadeem
>> >>
>> >>
>> >> On Wed, Mar 5, 2014 at 11:57 PM, Marlon Pierce <marpierc@iu.edu>
>> wrote:
>> >>
>> >>> Try "mvn clean install -Dmaven.test.skip=true" to skip the integration
>> >>> tests.  Airavata is undergoing a lot of fundamental changes as we work
>> >>> out the Thrift API, and this has broken many older tests.
>> >>>
>> >>>
>> >>> Marlon
>> >>>
>> >>> On 3/5/14 1:13 PM, Nadeem Anjum wrote:
>> >>>> Thanks Supun. I fixed the previous issue with your suggestion.
>> >>>>
>> >>>> But I am still getting an error towards the end while building
>> >>> Integration
>> >>>> Tests. Below are last few lines of the log. Any ideas on how to
fix
>> this?
>> >>>>
>> >>>>
>> >>>
>> LOG:______________________________________________________________________
>> >>>> [INFO] [talledLocalContainer]   ... 29 more
>> >>>> [INFO] [talledLocalContainer] Caused by: java.lang.RuntimeException:
>> >>>> Database fa
>> >>>> ilure
>> >>>> [INFO] [talledLocalContainer]   at
>> >>>> org.apache.airavata.registry.services.Registr
>> >>>> yService.initializeDB(RegistryService.java:140)
>> >>>> [INFO] [talledLocalContainer]   at
>> >>>> org.apache.airavata.registry.services.Registr
>> >>>> yService.startUp(RegistryService.java:64)
>> >>>> [INFO] [talledLocalContainer]   at
>> >>>> org.apache.axis2.deployment.ServiceBuilder.lo
>> >>>> adServiceLifeCycleClass(ServiceBuilder.java:518)
>> >>>> [INFO] [talledLocalContainer]   ... 30 more
>> >>>> [INFO] [talledLocalContainer] [INFO]
>> >>>> org.apache.axis2.deployment.DeploymentExcep
>> >>>> tion: Database failure
>> >>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>> >>>> airavata-simple-math
>> >>>> -service-0.11.aar -
>> >>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modul
>> >>>>
>> >>>
>> es/integration-tests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF
>> >>>> /services/airavata-simple-math-service-0.11.aar
>> >>>> [INFO] [talledLocalContainer]
>> >>>> DriverClassName=org.apache.derby.jdbc.ClientDriver
>> >>>>
>> >>>
>> ,Url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;passw
>> >>>>
>> ord=airavata,Username=airavata,Password=airavata,validationQuery=SELECT 1
>> >>>> from C
>> >>>>
>> >>>
>> onfiguration,MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,t
>> >>>> estOnBorrow=true
>> >>>> [INFO] [talledLocalContainer] 1  airavata_data  INFO   [Thread-6]
>> >>>> openjpa.Runtim
>> >>>> e - Starting OpenJPA 2.2.0
>> >>>> [INFO] [talledLocalContainer] 27  airavata_data  INFO   [Thread-6]
>> >>>> openjpa.jdbc.
>> >>>> JDBC - Using dictionary class
>> >>> "org.apache.openjpa.jdbc.sql.DerbyDictionary"
>> >>>> (Apa
>> >>>> che Derby 10.9.1.0 - (1344872) ,Apache Derby Network Client JDBC
>> Driver
>> >>>> 10.9.1.0
>> >>>>  - (1344872)).
>> >>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>> >>>> airavata-xbaya-gui-0
>> >>>> .11.jar -
>> >>>>
>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integra
>> >>>>
>> >>>
>> tion-tests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/
>> >>>> airavata-xbaya-gui-0.11.jar
>> >>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>> >>>> echo-service-0.11.aa
>> >>>> r -
>> >>>>
>> >>>
>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integration-t
>> >>>
>> ests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/echo-s
>> >>>> ervice-0.11.aar
>> >>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>> >>>> version-1.5.1.aar -
>> >>>>
>> >>>
>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integration-tests
>> >>>
>> /target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/version-1.
>> >>>> 5.1.aar
>> >>>> [INFO] [talledLocalContainer] Mar 05, 2014 11:30:17 PM
>> >>>> org.apache.catalina.start
>> >>>> up.HostConfig deployWAR
>> >>>> [INFO] [talledLocalContainer] INFO: Deploying web application archive
>> >>>> C:\Users\N
>> >>>>
>> >>>
>> adeem\workspace\airavata-airavata-0.11\modules\integration-tests\target\apache-t
>> >>>> omcat-7.0.41\webapps\airavata.war
>> >>>> [INFO] [yer.DeployerWatchdog] Deployable [
>> >>>> http://localhost:8080/cargocpc/index.h
>> >>>> tml] failed to finish deploying within the timeout period [120000].
>> The
>> >>>> Deployab
>> >>>> le state is thus unknown.
>> >>>> [INFO]
>> >>>>
>> ------------------------------------------------------------------------
>> >>>> [INFO] Reactor Summary:
>> >>>> [INFO]
>> >>>> [INFO] Airavata .......................................... SUCCESS
[
>> >>>  9.553
>> >>>> s]
>> >>>> [INFO] Airavata Commons .................................. SUCCESS
[
>> >>>  0.175
>> >>>> s]
>> >>>> [INFO] Airavata Common Utilities ......................... SUCCESS
[
>> >>> 11.220
>> >>>> s]
>> >>>> [INFO] Airavata GFac Schema Utilities .................... SUCCESS
>> [01:11
>> >>>> min]
>> >>>> [INFO] Airavata Registry ................................. SUCCESS
[
>> >>>  0.134
>> >>>> s]
>> >>>> [INFO] Airavata Registry API ............................. SUCCESS
[
>> >>>  8.761
>> >>>> s]
>> >>>> [INFO] Airavata Workflow Model Parent .................... SUCCESS
[
>> >>>  0.076
>> >>>> s]
>> >>>> [INFO] Airavata Workflow Model Core ...................... SUCCESS
[
>> >>> 12.022
>> >>>> s]
>> >>>> [INFO] Airavata WS Messenger ............................. SUCCESS
[
>> >>>  0.144
>> >>>> s]
>> >>>> [INFO] Airavata Messenger Commons ........................ SUCCESS
[
>> >>>  7.035
>> >>>> s]
>> >>>> [INFO] Airavata Messenger Client ......................... SUCCESS
[
>> >>>  7.800
>> >>>> s]
>> >>>> [INFO] Airavata WS Monitor ............................... SUCCESS
[
>> >>>  5.838
>> >>>> s]
>> >>>> [INFO] Airavata Workflow Execution Context ............... SUCCESS
[
>> >>> 14.451
>> >>>> s]
>> >>>> [INFO] Airavata Thrift ................................... SUCCESS
[
>> >>>  0.113
>> >>>> s]
>> >>>> [INFO] Airavata Interpreter Service ...................... SUCCESS
[
>> >>>  9.276
>> >>>> s]
>> >>>> [INFO] Airavata Interpreter Service Client ............... SUCCESS
[
>> >>>  2.014
>> >>>> s]
>> >>>> [INFO] Airavata Client ................................... SUCCESS
[
>> >>> 45.515
>> >>>> s]
>> >>>> [INFO] Airavata Workflow Tracking ........................ SUCCESS
[
>> >>> 35.333
>> >>>> s]
>> >>>> [INFO] Airavata Credential Store ......................... SUCCESS
[
>> >>>  6.539
>> >>>> s]
>> >>>> [INFO] GSISSH Library .................................... SUCCESS
[
>> >>> 20.706
>> >>>> s]
>> >>>> [INFO] Airavata GFac ..................................... SUCCESS
[
>> >>>  0.066
>> >>>> s]
>> >>>> [INFO] Airavata GFac Core ................................ SUCCESS
[
>> >>> 44.143
>> >>>> s]
>> >>>> [INFO] Airavata GFac Core ................................ SUCCESS
[
>> >>>  8.396
>> >>>> s]
>> >>>> [INFO] Airavata Message Box .............................. SUCCESS
[
>> >>>  7.185
>> >>>> s]
>> >>>> [INFO] Airavata Message Broker ........................... SUCCESS
[
>> >>> 10.017
>> >>>> s]
>> >>>> [INFO] Airavata Workflow Component ....................... SUCCESS
[
>> >>>  3.935
>> >>>> s]
>> >>>> [INFO] Airavata Workflow Component Node .................. SUCCESS
[
>> >>>  0.939
>> >>>> s]
>> >>>> [INFO] Complex Math Service .............................. SUCCESS
[
>> >>>  1.962
>> >>>> s]
>> >>>> [INFO] Echo Service ...................................... SUCCESS
[
>> >>>  1.424
>> >>>> s]
>> >>>> [INFO] Levenshtein Distance Service ...................... SUCCESS
[
>> >>>  1.563
>> >>>> s]
>> >>>> [INFO] Simple Math Service ............................... SUCCESS
[
>> >>>  1.608
>> >>>> s]
>> >>>> [INFO] samples ........................................... SUCCESS
[
>> >>>  0.111
>> >>>> s]
>> >>>> [INFO] Airavata Samples .................................. SUCCESS
[
>> >>>  3.433
>> >>>> s]
>> >>>> [INFO] Airavata JPA Registry ............................. SUCCESS
[
>> >>> 21.636
>> >>>> s]
>> >>>> [INFO] Airavata REST ..................................... SUCCESS
[
>> >>>  0.122
>> >>>> s]
>> >>>> [INFO] airavata-rest-mappings ............................ SUCCESS
[
>> >>>  6.194
>> >>>> s]
>> >>>> [INFO] airavata-rest-client .............................. SUCCESS
[
>> >>>  9.103
>> >>>> s]
>> >>>> [INFO] Airavata XBaya .................................... SUCCESS
>> [01:04
>> >>>> min]
>> >>>> [INFO] Airavata JSON ..................................... SUCCESS
[
>> >>>  2.264
>> >>>> s]
>> >>>> [INFO] Airavata Registry Service ......................... SUCCESS
[
>> >>>  5.493
>> >>>> s]
>> >>>> [INFO] Airavata Registry Test ............................ SUCCESS
[
>> >>>  1.690
>> >>>> s]
>> >>>> [INFO] Airavata Security Implementation .................. SUCCESS
[
>> >>>  4.300
>> >>>> s]
>> >>>> [INFO] airavata-rest-services ............................ SUCCESS
[
>> >>>  8.155
>> >>>> s]
>> >>>> [INFO] airavata-rest-service-webapp ...................... SUCCESS
[
>> >>> 18.878
>> >>>> s]
>> >>>> [INFO] Airavata Interpreter Service Handler .............. SUCCESS
[
>> >>> 11.737
>> >>>> s]
>> >>>> [INFO] Airavata Tools .................................... SUCCESS
[
>> >>>  0.103
>> >>>> s]
>> >>>> [INFO] Airavata Phoebus Integration ...................... SUCCESS
[
>> >>>  9.698
>> >>>> s]
>> >>>> [INFO] registry-tool ..................................... SUCCESS
[
>> >>> 10.514
>> >>>> s]
>> >>>> [INFO] SampleGateway Maven Webapp ........................ SUCCESS
[
>> >>> 18.346
>> >>>> s]
>> >>>> [INFO] distribution ...................................... SUCCESS
[
>> >>>  0.122
>> >>>> s]
>> >>>> [INFO] Samples - Airavata Client Samples ................. SUCCESS
[
>> >>>  0.111
>> >>>> s]
>> >>>> [INFO] Samples - Workflow Create Application ............. SUCCESS
[
>> >>>  5.839
>> >>>> s]
>> >>>> [INFO] Samples - Workflow Execution ...................... SUCCESS
[
>> >>>  5.045
>> >>>> s]
>> >>>> [INFO] Airavata Embedded Tomcat Implementation ........... SUCCESS
[
>> >>>  4.155
>> >>>> s]
>> >>>> [INFO] Airavata Test Suite ............................... SUCCESS
[
>> >>>  4.902
>> >>>> s]
>> >>>> [INFO] Airavata server distribution ...................... SUCCESS
>> [02:33
>> >>>> min]
>> >>>> [INFO] Airavata client distribution ...................... SUCCESS
[
>> >>> 37.303
>> >>>> s]
>> >>>> [INFO] Airavata xbaya-gui distribution ................... SUCCESS
>> [03:45
>> >>>> min]
>> >>>> [INFO] Airavata release artifacts ........................ SUCCESS
[
>> >>> 37.635
>> >>>> s]
>> >>>> [INFO] Airavata Integration Tests ........................ FAILURE
>> [04:16
>> >>>> min]
>> >>>> [INFO]
>> >>>>
>> ------------------------------------------------------------------------
>> >>>> [INFO] BUILD FAILURE
>> >>>> [INFO]
>> >>>>
>> ------------------------------------------------------------------------
>> >>>> [INFO] Total time: 21:20 min
>> >>>> [INFO] Finished at: 2014-03-05T23:30:24+05:30
>> >>>> [INFO] Final Memory: 68M/1262M
>> >>>> [INFO]
>> >>>>
>> ------------------------------------------------------------------------
>> >>>> [ERROR] Failed to execute goal
>> >>>> org.codehaus.cargo:cargo-maven2-plugin:1.3.1:star
>> >>>> t (start-container) on project integration-tests: Execution
>> >>> start-container
>> >>>> of g
>> >>>> oal org.codehaus.cargo:cargo-maven2-plugin:1.3.1:start failed:
>> Failed to
>> >>>> start t
>> >>>> he Tomcat 7.x container. Deployable [
>> >>>> http://localhost:8080/cargocpc/index.html]
>> >>>> failed to finish deploying within the timeout period [120000]. The
>> >>>> Deployable st
>> >>>> ate is thus unknown. -> [Help 1]
>> >>>>
>> >>>
>> ____________________________________________________________________________
>> >>>> Thanks,
>> >>>> Nadeem.
>> >>>>
>> >>>>
>> >>>> On Wed, Mar 5, 2014 at 10:34 PM, Supun Nakandala
>> >>>> <supun.nakandala@gmail.com>wrote:
>> >>>>
>> >>>>> Hi Nadeem,
>> >>>>>
>> >>>>> I also got this error sometimes. Since I had previously build
>> Airavata
>> >>>>> successfully  in my local machine I used the maven offline build
>> (mvn -o
>> >>>>> clean install) so that the dependencies are not downloaded again
>> from
>> >>>>> remote sites.
>> >>>>>
>> >>>>> Regards
>> >>>>> Supun
>> >>>>>
>> >>>>>
>> >>>>>
>> >>>>> On Wed, Mar 5, 2014 at 10:22 PM, Nadeem Anjum <
>> nadeem.cs.iit@gmail.com
>> >>>> wrote:
>> >>>>>> Hi all,
>> >>>>>>
>> >>>>>> I am getting the following error while building airavata
from
>> source
>> >>>>>> (0.11 release):
>> >>>>>>
>> ______________________________________________________________________
>> >>>>>>
>> >>>>>> Downloading:
>> >>>>>>
>> >>>
>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all/de/fzj/unicore/jsdl-xmlbeans/2.1.1-SNAPSHOT/maven-metadata.xml
>> >>>>>> [WARNING] Could not transfer metadata
>> >>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml
>> from/to
>> >>>>>> ogce.m2.all (
>> >>>>>>
>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>> >>>>>> community.ucs.indiana.edu
>> >>>>>> [WARNING] Failure to transfer
>> >>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml
from
>> >>>>>>
>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.allwas
>> >>>>>> cached in the local repository, resolution will not be reattempted
>> >>> until
>> >>>>>> the update interval of ogce.m2.all has elapsed or updates
are
>> forced.
>> >>>>>> Original error: Could not transfer metadata
>> >>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml
>> from/to
>> >>>>>> ogce.m2.all (
>> >>>>>>
>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>> >>>>>> community.ucs.indiana.edu
>> >>>>>>
>> >>>>>> [ERROR] Failed to execute goal on project airavata-gfac-core:
>> Could not
>> >>>>>> resolve dependencies for project
>> >>>>>> org.apache.airavata:airavata-gfac-core:jar:0.11: Failed
to collect
>> >>>>>> dependencies at eu.unicore:ogsabes-client:jar:1.7.0-rc ->
>> >>>>>> eu.unicore:uas-client:jar:1.7.0-rc ->
>> >>>>>> eu.unicore.services:use-wsrfclient:jar:3.0.0-rc ->
>> >>>>>> org.apache.xmlbeans:xmlbeans-xpath:jar:2.6.0 ->
>> >>> net.sf.saxon:saxon:jar:9:
>> >>>>>> Failed to read artifact descriptor for net.sf.saxon:saxon:jar:9:
>> Could
>> >>> not
>> >>>>>> transfer artifact net.sf.saxon:saxon:pom:9 from/to ogce.m2.all
(
>> >>>>>>
>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>> >>>>>> community.ucs.indiana.edu: Unknown host community.ucs.indiana.edu->
>> >>>>>> [Help 1]
>> >>>>>>
>> >>>>>>
>> >>>
>> __________________________________________________________________________________________________
>> >>>>>> Apparently,
>> >>>>>>
>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all
>> >>>>>> is'nt accessible over browser as well.
>> >>>>>>
>> >>>>>> Could anyone suggest a possible solution?
>> >>>>>>
>> >>>>>> Thanks,
>> >>>>>> Nadeem
>> >>>>>>
>> >>>>> --
>> >>>>> Thank you
>> >>>>> Supun Nakandala
>> >>>>> Dept. Computer Science and Engineering
>> >>>>> University of Moratuwa
>> >>>>>
>>
>>
>

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