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From Marlon Pierce <marpi...@iu.edu>
Subject Re: Error while building airavata
Date Thu, 06 Mar 2014 13:58:49 GMT
+1 for using the trunk if you are interested in development. The 0.11
release is more appropriate for users.  0.12 should hopefully be out in
a couple of weeks.

It is good practice to document the 0.11 problems in Jira so that we
have a record (and so things show up in searches) even though we are not
likely to fix them.

Marlon

On 3/5/14 11:35 PM, Lahiru Gunathilake wrote:
> Hi Nadeem,
>
> Actually we haven't tested the build on Windows, I think thats is the
> issue, otherwise I don't think the build will fail in a release (including
> tests and integration tests).
>
> And we are not thoroughly testing on windows. Please report any issues you
> find in trunk mostly because 0.11 release is almost obsolete due to drastic
> changes we've done last couple of weeks.
>
> Regards
> Lahiru
>
>
> On Wed, Mar 5, 2014 at 3:10 PM, Saminda Wijeratne <samindaw@gmail.com>wrote:
>
>> The integration tests in the trunk are broken at the moment. We are
>> working on fixing them [1].
>>
>> 1. https://issues.apache.org/jira/browse/AIRAVATA-1053
>>
>>
>> On Wed, Mar 5, 2014 at 1:59 PM, Marlon Pierce <marpierc@iu.edu> wrote:
>>
>>> Clarification: I was able to build 0.11 from source using mvn clean
>>> install -o -Dmaven.test.skip=true
>>>
>>>
>>> Marlon
>>>
>>> On 3/5/14 1:58 PM, Marlon Pierce wrote:
>>>> I had no problems with the build with -Dmaven.tests.skip=true but needed
>>>> to use the -o flag, as discussed below.  You can skip the integration
>>>> tests by commenting this out from the top level pom. Please file a bug
>>>> in Jira for this.
>>>>
>>>> Release 0.11 had some dependencies on optional jars that were downloaded
>>>> from an Archiva server (community.ucs.indiana.edu).  This got hacked
>>>> because of a security flaw in the Archiva release, so we took it down.
>>>> This was bad practice in any case.
>>>>
>>>> Depending on what you are doing, you may be better off looking at the
>>>> trunk.  Release 0.12 is coming.
>>>>
>>>> Marlon
>>>>
>>>>
>>>> On 3/5/14 1:32 PM, Nadeem Anjum wrote:
>>>>> Hi Marlon,
>>>>>
>>>>> I had built with "mvn clean install -Dmaven.test.skip=true" itself.
>>> This
>>>>> skips the other tests, but still builds Airavata Integration tests.
>>>>>
>>>>> Moreover, I am building the 0.11 release, that should not have the
>>> recent
>>>>> changes right?
>>>>>
>>>>> Thanks,
>>>>> Nadeem
>>>>>
>>>>>
>>>>> On Wed, Mar 5, 2014 at 11:57 PM, Marlon Pierce <marpierc@iu.edu>
>>> wrote:
>>>>>> Try "mvn clean install -Dmaven.test.skip=true" to skip the integration
>>>>>> tests.  Airavata is undergoing a lot of fundamental changes as we
work
>>>>>> out the Thrift API, and this has broken many older tests.
>>>>>>
>>>>>>
>>>>>> Marlon
>>>>>>
>>>>>> On 3/5/14 1:13 PM, Nadeem Anjum wrote:
>>>>>>> Thanks Supun. I fixed the previous issue with your suggestion.
>>>>>>>
>>>>>>> But I am still getting an error towards the end while building
>>>>>> Integration
>>>>>>> Tests. Below are last few lines of the log. Any ideas on how
to fix
>>> this?
>>>>>>>
>>> LOG:______________________________________________________________________
>>>>>>> [INFO] [talledLocalContainer]   ... 29 more
>>>>>>> [INFO] [talledLocalContainer] Caused by: java.lang.RuntimeException:
>>>>>>> Database fa
>>>>>>> ilure
>>>>>>> [INFO] [talledLocalContainer]   at
>>>>>>> org.apache.airavata.registry.services.Registr
>>>>>>> yService.initializeDB(RegistryService.java:140)
>>>>>>> [INFO] [talledLocalContainer]   at
>>>>>>> org.apache.airavata.registry.services.Registr
>>>>>>> yService.startUp(RegistryService.java:64)
>>>>>>> [INFO] [talledLocalContainer]   at
>>>>>>> org.apache.axis2.deployment.ServiceBuilder.lo
>>>>>>> adServiceLifeCycleClass(ServiceBuilder.java:518)
>>>>>>> [INFO] [talledLocalContainer]   ... 30 more
>>>>>>> [INFO] [talledLocalContainer] [INFO]
>>>>>>> org.apache.axis2.deployment.DeploymentExcep
>>>>>>> tion: Database failure
>>>>>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>>>>>> airavata-simple-math
>>>>>>> -service-0.11.aar -
>>>>>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modul
>>>>>>>
>>> es/integration-tests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF
>>>>>>> /services/airavata-simple-math-service-0.11.aar
>>>>>>> [INFO] [talledLocalContainer]
>>>>>>> DriverClassName=org.apache.derby.jdbc.ClientDriver
>>>>>>>
>>> ,Url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;passw
>>> ord=airavata,Username=airavata,Password=airavata,validationQuery=SELECT 1
>>>>>>> from C
>>>>>>>
>>> onfiguration,MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,t
>>>>>>> estOnBorrow=true
>>>>>>> [INFO] [talledLocalContainer] 1  airavata_data  INFO   [Thread-6]
>>>>>>> openjpa.Runtim
>>>>>>> e - Starting OpenJPA 2.2.0
>>>>>>> [INFO] [talledLocalContainer] 27  airavata_data  INFO   [Thread-6]
>>>>>>> openjpa.jdbc.
>>>>>>> JDBC - Using dictionary class
>>>>>> "org.apache.openjpa.jdbc.sql.DerbyDictionary"
>>>>>>> (Apa
>>>>>>> che Derby 10.9.1.0 - (1344872) ,Apache Derby Network Client JDBC
>>> Driver
>>>>>>> 10.9.1.0
>>>>>>>  - (1344872)).
>>>>>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>>>>>> airavata-xbaya-gui-0
>>>>>>> .11.jar -
>>>>>>>
>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integra
>>> tion-tests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/
>>>>>>> airavata-xbaya-gui-0.11.jar
>>>>>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>>>>>> echo-service-0.11.aa
>>>>>>> r -
>>>>>>>
>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integration-t
>>> ests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/echo-s
>>>>>>> ervice-0.11.aar
>>>>>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>>>>>> version-1.5.1.aar -
>>>>>>>
>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integration-tests
>>> /target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/version-1.
>>>>>>> 5.1.aar
>>>>>>> [INFO] [talledLocalContainer] Mar 05, 2014 11:30:17 PM
>>>>>>> org.apache.catalina.start
>>>>>>> up.HostConfig deployWAR
>>>>>>> [INFO] [talledLocalContainer] INFO: Deploying web application
archive
>>>>>>> C:\Users\N
>>>>>>>
>>> adeem\workspace\airavata-airavata-0.11\modules\integration-tests\target\apache-t
>>>>>>> omcat-7.0.41\webapps\airavata.war
>>>>>>> [INFO] [yer.DeployerWatchdog] Deployable [
>>>>>>> http://localhost:8080/cargocpc/index.h
>>>>>>> tml] failed to finish deploying within the timeout period [120000].
>>> The
>>>>>>> Deployab
>>>>>>> le state is thus unknown.
>>>>>>> [INFO]
>>>>>>>
>>> ------------------------------------------------------------------------
>>>>>>> [INFO] Reactor Summary:
>>>>>>> [INFO]
>>>>>>> [INFO] Airavata .......................................... SUCCESS
[
>>>>>>  9.553
>>>>>>> s]
>>>>>>> [INFO] Airavata Commons .................................. SUCCESS
[
>>>>>>  0.175
>>>>>>> s]
>>>>>>> [INFO] Airavata Common Utilities ......................... SUCCESS
[
>>>>>> 11.220
>>>>>>> s]
>>>>>>> [INFO] Airavata GFac Schema Utilities .................... SUCCESS
>>> [01:11
>>>>>>> min]
>>>>>>> [INFO] Airavata Registry ................................. SUCCESS
[
>>>>>>  0.134
>>>>>>> s]
>>>>>>> [INFO] Airavata Registry API ............................. SUCCESS
[
>>>>>>  8.761
>>>>>>> s]
>>>>>>> [INFO] Airavata Workflow Model Parent .................... SUCCESS
[
>>>>>>  0.076
>>>>>>> s]
>>>>>>> [INFO] Airavata Workflow Model Core ...................... SUCCESS
[
>>>>>> 12.022
>>>>>>> s]
>>>>>>> [INFO] Airavata WS Messenger ............................. SUCCESS
[
>>>>>>  0.144
>>>>>>> s]
>>>>>>> [INFO] Airavata Messenger Commons ........................ SUCCESS
[
>>>>>>  7.035
>>>>>>> s]
>>>>>>> [INFO] Airavata Messenger Client ......................... SUCCESS
[
>>>>>>  7.800
>>>>>>> s]
>>>>>>> [INFO] Airavata WS Monitor ............................... SUCCESS
[
>>>>>>  5.838
>>>>>>> s]
>>>>>>> [INFO] Airavata Workflow Execution Context ............... SUCCESS
[
>>>>>> 14.451
>>>>>>> s]
>>>>>>> [INFO] Airavata Thrift ................................... SUCCESS
[
>>>>>>  0.113
>>>>>>> s]
>>>>>>> [INFO] Airavata Interpreter Service ...................... SUCCESS
[
>>>>>>  9.276
>>>>>>> s]
>>>>>>> [INFO] Airavata Interpreter Service Client ............... SUCCESS
[
>>>>>>  2.014
>>>>>>> s]
>>>>>>> [INFO] Airavata Client ................................... SUCCESS
[
>>>>>> 45.515
>>>>>>> s]
>>>>>>> [INFO] Airavata Workflow Tracking ........................ SUCCESS
[
>>>>>> 35.333
>>>>>>> s]
>>>>>>> [INFO] Airavata Credential Store ......................... SUCCESS
[
>>>>>>  6.539
>>>>>>> s]
>>>>>>> [INFO] GSISSH Library .................................... SUCCESS
[
>>>>>> 20.706
>>>>>>> s]
>>>>>>> [INFO] Airavata GFac ..................................... SUCCESS
[
>>>>>>  0.066
>>>>>>> s]
>>>>>>> [INFO] Airavata GFac Core ................................ SUCCESS
[
>>>>>> 44.143
>>>>>>> s]
>>>>>>> [INFO] Airavata GFac Core ................................ SUCCESS
[
>>>>>>  8.396
>>>>>>> s]
>>>>>>> [INFO] Airavata Message Box .............................. SUCCESS
[
>>>>>>  7.185
>>>>>>> s]
>>>>>>> [INFO] Airavata Message Broker ........................... SUCCESS
[
>>>>>> 10.017
>>>>>>> s]
>>>>>>> [INFO] Airavata Workflow Component ....................... SUCCESS
[
>>>>>>  3.935
>>>>>>> s]
>>>>>>> [INFO] Airavata Workflow Component Node .................. SUCCESS
[
>>>>>>  0.939
>>>>>>> s]
>>>>>>> [INFO] Complex Math Service .............................. SUCCESS
[
>>>>>>  1.962
>>>>>>> s]
>>>>>>> [INFO] Echo Service ...................................... SUCCESS
[
>>>>>>  1.424
>>>>>>> s]
>>>>>>> [INFO] Levenshtein Distance Service ...................... SUCCESS
[
>>>>>>  1.563
>>>>>>> s]
>>>>>>> [INFO] Simple Math Service ............................... SUCCESS
[
>>>>>>  1.608
>>>>>>> s]
>>>>>>> [INFO] samples ........................................... SUCCESS
[
>>>>>>  0.111
>>>>>>> s]
>>>>>>> [INFO] Airavata Samples .................................. SUCCESS
[
>>>>>>  3.433
>>>>>>> s]
>>>>>>> [INFO] Airavata JPA Registry ............................. SUCCESS
[
>>>>>> 21.636
>>>>>>> s]
>>>>>>> [INFO] Airavata REST ..................................... SUCCESS
[
>>>>>>  0.122
>>>>>>> s]
>>>>>>> [INFO] airavata-rest-mappings ............................ SUCCESS
[
>>>>>>  6.194
>>>>>>> s]
>>>>>>> [INFO] airavata-rest-client .............................. SUCCESS
[
>>>>>>  9.103
>>>>>>> s]
>>>>>>> [INFO] Airavata XBaya .................................... SUCCESS
>>> [01:04
>>>>>>> min]
>>>>>>> [INFO] Airavata JSON ..................................... SUCCESS
[
>>>>>>  2.264
>>>>>>> s]
>>>>>>> [INFO] Airavata Registry Service ......................... SUCCESS
[
>>>>>>  5.493
>>>>>>> s]
>>>>>>> [INFO] Airavata Registry Test ............................ SUCCESS
[
>>>>>>  1.690
>>>>>>> s]
>>>>>>> [INFO] Airavata Security Implementation .................. SUCCESS
[
>>>>>>  4.300
>>>>>>> s]
>>>>>>> [INFO] airavata-rest-services ............................ SUCCESS
[
>>>>>>  8.155
>>>>>>> s]
>>>>>>> [INFO] airavata-rest-service-webapp ...................... SUCCESS
[
>>>>>> 18.878
>>>>>>> s]
>>>>>>> [INFO] Airavata Interpreter Service Handler .............. SUCCESS
[
>>>>>> 11.737
>>>>>>> s]
>>>>>>> [INFO] Airavata Tools .................................... SUCCESS
[
>>>>>>  0.103
>>>>>>> s]
>>>>>>> [INFO] Airavata Phoebus Integration ...................... SUCCESS
[
>>>>>>  9.698
>>>>>>> s]
>>>>>>> [INFO] registry-tool ..................................... SUCCESS
[
>>>>>> 10.514
>>>>>>> s]
>>>>>>> [INFO] SampleGateway Maven Webapp ........................ SUCCESS
[
>>>>>> 18.346
>>>>>>> s]
>>>>>>> [INFO] distribution ...................................... SUCCESS
[
>>>>>>  0.122
>>>>>>> s]
>>>>>>> [INFO] Samples - Airavata Client Samples ................. SUCCESS
[
>>>>>>  0.111
>>>>>>> s]
>>>>>>> [INFO] Samples - Workflow Create Application ............. SUCCESS
[
>>>>>>  5.839
>>>>>>> s]
>>>>>>> [INFO] Samples - Workflow Execution ...................... SUCCESS
[
>>>>>>  5.045
>>>>>>> s]
>>>>>>> [INFO] Airavata Embedded Tomcat Implementation ........... SUCCESS
[
>>>>>>  4.155
>>>>>>> s]
>>>>>>> [INFO] Airavata Test Suite ............................... SUCCESS
[
>>>>>>  4.902
>>>>>>> s]
>>>>>>> [INFO] Airavata server distribution ...................... SUCCESS
>>> [02:33
>>>>>>> min]
>>>>>>> [INFO] Airavata client distribution ...................... SUCCESS
[
>>>>>> 37.303
>>>>>>> s]
>>>>>>> [INFO] Airavata xbaya-gui distribution ................... SUCCESS
>>> [03:45
>>>>>>> min]
>>>>>>> [INFO] Airavata release artifacts ........................ SUCCESS
[
>>>>>> 37.635
>>>>>>> s]
>>>>>>> [INFO] Airavata Integration Tests ........................ FAILURE
>>> [04:16
>>>>>>> min]
>>>>>>> [INFO]
>>>>>>>
>>> ------------------------------------------------------------------------
>>>>>>> [INFO] BUILD FAILURE
>>>>>>> [INFO]
>>>>>>>
>>> ------------------------------------------------------------------------
>>>>>>> [INFO] Total time: 21:20 min
>>>>>>> [INFO] Finished at: 2014-03-05T23:30:24+05:30
>>>>>>> [INFO] Final Memory: 68M/1262M
>>>>>>> [INFO]
>>>>>>>
>>> ------------------------------------------------------------------------
>>>>>>> [ERROR] Failed to execute goal
>>>>>>> org.codehaus.cargo:cargo-maven2-plugin:1.3.1:star
>>>>>>> t (start-container) on project integration-tests: Execution
>>>>>> start-container
>>>>>>> of g
>>>>>>> oal org.codehaus.cargo:cargo-maven2-plugin:1.3.1:start failed:
>>> Failed to
>>>>>>> start t
>>>>>>> he Tomcat 7.x container. Deployable [
>>>>>>> http://localhost:8080/cargocpc/index.html]
>>>>>>> failed to finish deploying within the timeout period [120000].
The
>>>>>>> Deployable st
>>>>>>> ate is thus unknown. -> [Help 1]
>>>>>>>
>>> ____________________________________________________________________________
>>>>>>> Thanks,
>>>>>>> Nadeem.
>>>>>>>
>>>>>>>
>>>>>>> On Wed, Mar 5, 2014 at 10:34 PM, Supun Nakandala
>>>>>>> <supun.nakandala@gmail.com>wrote:
>>>>>>>
>>>>>>>> Hi Nadeem,
>>>>>>>>
>>>>>>>> I also got this error sometimes. Since I had previously build
>>> Airavata
>>>>>>>> successfully  in my local machine I used the maven offline
build
>>> (mvn -o
>>>>>>>> clean install) so that the dependencies are not downloaded
again
>>> from
>>>>>>>> remote sites.
>>>>>>>>
>>>>>>>> Regards
>>>>>>>> Supun
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Wed, Mar 5, 2014 at 10:22 PM, Nadeem Anjum <
>>> nadeem.cs.iit@gmail.com
>>>>>>> wrote:
>>>>>>>>> Hi all,
>>>>>>>>>
>>>>>>>>> I am getting the following error while building airavata
from
>>> source
>>>>>>>>> (0.11 release):
>>>>>>>>>
>>> ______________________________________________________________________
>>>>>>>>> Downloading:
>>>>>>>>>
>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all/de/fzj/unicore/jsdl-xmlbeans/2.1.1-SNAPSHOT/maven-metadata.xml
>>>>>>>>> [WARNING] Could not transfer metadata
>>>>>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml
>>> from/to
>>>>>>>>> ogce.m2.all (
>>>>>>>>>
>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>>>>>> community.ucs.indiana.edu
>>>>>>>>> [WARNING] Failure to transfer
>>>>>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml
from
>>>>>>>>>
>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.allwas
>>>>>>>>> cached in the local repository, resolution will not be
reattempted
>>>>>> until
>>>>>>>>> the update interval of ogce.m2.all has elapsed or updates
are
>>> forced.
>>>>>>>>> Original error: Could not transfer metadata
>>>>>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml
>>> from/to
>>>>>>>>> ogce.m2.all (
>>>>>>>>>
>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>>>>>> community.ucs.indiana.edu
>>>>>>>>>
>>>>>>>>> [ERROR] Failed to execute goal on project airavata-gfac-core:
>>> Could not
>>>>>>>>> resolve dependencies for project
>>>>>>>>> org.apache.airavata:airavata-gfac-core:jar:0.11: Failed
to collect
>>>>>>>>> dependencies at eu.unicore:ogsabes-client:jar:1.7.0-rc
->
>>>>>>>>> eu.unicore:uas-client:jar:1.7.0-rc ->
>>>>>>>>> eu.unicore.services:use-wsrfclient:jar:3.0.0-rc ->
>>>>>>>>> org.apache.xmlbeans:xmlbeans-xpath:jar:2.6.0 ->
>>>>>> net.sf.saxon:saxon:jar:9:
>>>>>>>>> Failed to read artifact descriptor for net.sf.saxon:saxon:jar:9:
>>> Could
>>>>>> not
>>>>>>>>> transfer artifact net.sf.saxon:saxon:pom:9 from/to ogce.m2.all
(
>>>>>>>>>
>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>>>>>> community.ucs.indiana.edu: Unknown host community.ucs.indiana.edu->
>>>>>>>>> [Help 1]
>>>>>>>>>
>>>>>>>>>
>>> __________________________________________________________________________________________________
>>>>>>>>> Apparently,
>>>>>>>>>
>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all
>>>>>>>>> is'nt accessible over browser as well.
>>>>>>>>>
>>>>>>>>> Could anyone suggest a possible solution?
>>>>>>>>>
>>>>>>>>> Thanks,
>>>>>>>>> Nadeem
>>>>>>>>>
>>>>>>>> --
>>>>>>>> Thank you
>>>>>>>> Supun Nakandala
>>>>>>>> Dept. Computer Science and Engineering
>>>>>>>> University of Moratuwa
>>>>>>>>
>>>
>


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