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From Marlon Pierce <marpi...@iu.edu>
Subject Re: Error while building airavata
Date Wed, 05 Mar 2014 18:59:55 GMT
Clarification: I was able to build 0.11 from source using mvn clean
install -o -Dmaven.test.skip=true


Marlon

On 3/5/14 1:58 PM, Marlon Pierce wrote:
> I had no problems with the build with -Dmaven.tests.skip=true but needed
> to use the -o flag, as discussed below.  You can skip the integration
> tests by commenting this out from the top level pom. Please file a bug
> in Jira for this. 
>
> Release 0.11 had some dependencies on optional jars that were downloaded
> from an Archiva server (community.ucs.indiana.edu).  This got hacked
> because of a security flaw in the Archiva release, so we took it down. 
> This was bad practice in any case.
>
> Depending on what you are doing, you may be better off looking at the
> trunk.  Release 0.12 is coming.
>
> Marlon
>
>
> On 3/5/14 1:32 PM, Nadeem Anjum wrote:
>> Hi Marlon,
>>
>> I had built with "mvn clean install -Dmaven.test.skip=true" itself. This
>> skips the other tests, but still builds Airavata Integration tests.
>>
>> Moreover, I am building the 0.11 release, that should not have the recent
>> changes right?
>>
>> Thanks,
>> Nadeem
>>
>>
>> On Wed, Mar 5, 2014 at 11:57 PM, Marlon Pierce <marpierc@iu.edu> wrote:
>>
>>> Try "mvn clean install -Dmaven.test.skip=true" to skip the integration
>>> tests.  Airavata is undergoing a lot of fundamental changes as we work
>>> out the Thrift API, and this has broken many older tests.
>>>
>>>
>>> Marlon
>>>
>>> On 3/5/14 1:13 PM, Nadeem Anjum wrote:
>>>> Thanks Supun. I fixed the previous issue with your suggestion.
>>>>
>>>> But I am still getting an error towards the end while building
>>> Integration
>>>> Tests. Below are last few lines of the log. Any ideas on how to fix this?
>>>>
>>>>
>>> LOG:______________________________________________________________________
>>>> [INFO] [talledLocalContainer]   ... 29 more
>>>> [INFO] [talledLocalContainer] Caused by: java.lang.RuntimeException:
>>>> Database fa
>>>> ilure
>>>> [INFO] [talledLocalContainer]   at
>>>> org.apache.airavata.registry.services.Registr
>>>> yService.initializeDB(RegistryService.java:140)
>>>> [INFO] [talledLocalContainer]   at
>>>> org.apache.airavata.registry.services.Registr
>>>> yService.startUp(RegistryService.java:64)
>>>> [INFO] [talledLocalContainer]   at
>>>> org.apache.axis2.deployment.ServiceBuilder.lo
>>>> adServiceLifeCycleClass(ServiceBuilder.java:518)
>>>> [INFO] [talledLocalContainer]   ... 30 more
>>>> [INFO] [talledLocalContainer] [INFO]
>>>> org.apache.axis2.deployment.DeploymentExcep
>>>> tion: Database failure
>>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>>> airavata-simple-math
>>>> -service-0.11.aar -
>>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modul
>>>>
>>> es/integration-tests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF
>>>> /services/airavata-simple-math-service-0.11.aar
>>>> [INFO] [talledLocalContainer]
>>>> DriverClassName=org.apache.derby.jdbc.ClientDriver
>>>>
>>> ,Url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;passw
>>>> ord=airavata,Username=airavata,Password=airavata,validationQuery=SELECT 1
>>>> from C
>>>>
>>> onfiguration,MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,t
>>>> estOnBorrow=true
>>>> [INFO] [talledLocalContainer] 1  airavata_data  INFO   [Thread-6]
>>>> openjpa.Runtim
>>>> e - Starting OpenJPA 2.2.0
>>>> [INFO] [talledLocalContainer] 27  airavata_data  INFO   [Thread-6]
>>>> openjpa.jdbc.
>>>> JDBC - Using dictionary class
>>> "org.apache.openjpa.jdbc.sql.DerbyDictionary"
>>>> (Apa
>>>> che Derby 10.9.1.0 - (1344872) ,Apache Derby Network Client JDBC Driver
>>>> 10.9.1.0
>>>>  - (1344872)).
>>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>>> airavata-xbaya-gui-0
>>>> .11.jar -
>>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integra
>>>>
>>> tion-tests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/
>>>> airavata-xbaya-gui-0.11.jar
>>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>>> echo-service-0.11.aa
>>>> r -
>>>>
>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integration-t
>>> ests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/echo-s
>>>> ervice-0.11.aar
>>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>>> version-1.5.1.aar -
>>>>
>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integration-tests
>>> /target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/version-1.
>>>> 5.1.aar
>>>> [INFO] [talledLocalContainer] Mar 05, 2014 11:30:17 PM
>>>> org.apache.catalina.start
>>>> up.HostConfig deployWAR
>>>> [INFO] [talledLocalContainer] INFO: Deploying web application archive
>>>> C:\Users\N
>>>>
>>> adeem\workspace\airavata-airavata-0.11\modules\integration-tests\target\apache-t
>>>> omcat-7.0.41\webapps\airavata.war
>>>> [INFO] [yer.DeployerWatchdog] Deployable [
>>>> http://localhost:8080/cargocpc/index.h
>>>> tml] failed to finish deploying within the timeout period [120000]. The
>>>> Deployab
>>>> le state is thus unknown.
>>>> [INFO]
>>>> ------------------------------------------------------------------------
>>>> [INFO] Reactor Summary:
>>>> [INFO]
>>>> [INFO] Airavata .......................................... SUCCESS [
>>>  9.553
>>>> s]
>>>> [INFO] Airavata Commons .................................. SUCCESS [
>>>  0.175
>>>> s]
>>>> [INFO] Airavata Common Utilities ......................... SUCCESS [
>>> 11.220
>>>> s]
>>>> [INFO] Airavata GFac Schema Utilities .................... SUCCESS [01:11
>>>> min]
>>>> [INFO] Airavata Registry ................................. SUCCESS [
>>>  0.134
>>>> s]
>>>> [INFO] Airavata Registry API ............................. SUCCESS [
>>>  8.761
>>>> s]
>>>> [INFO] Airavata Workflow Model Parent .................... SUCCESS [
>>>  0.076
>>>> s]
>>>> [INFO] Airavata Workflow Model Core ...................... SUCCESS [
>>> 12.022
>>>> s]
>>>> [INFO] Airavata WS Messenger ............................. SUCCESS [
>>>  0.144
>>>> s]
>>>> [INFO] Airavata Messenger Commons ........................ SUCCESS [
>>>  7.035
>>>> s]
>>>> [INFO] Airavata Messenger Client ......................... SUCCESS [
>>>  7.800
>>>> s]
>>>> [INFO] Airavata WS Monitor ............................... SUCCESS [
>>>  5.838
>>>> s]
>>>> [INFO] Airavata Workflow Execution Context ............... SUCCESS [
>>> 14.451
>>>> s]
>>>> [INFO] Airavata Thrift ................................... SUCCESS [
>>>  0.113
>>>> s]
>>>> [INFO] Airavata Interpreter Service ...................... SUCCESS [
>>>  9.276
>>>> s]
>>>> [INFO] Airavata Interpreter Service Client ............... SUCCESS [
>>>  2.014
>>>> s]
>>>> [INFO] Airavata Client ................................... SUCCESS [
>>> 45.515
>>>> s]
>>>> [INFO] Airavata Workflow Tracking ........................ SUCCESS [
>>> 35.333
>>>> s]
>>>> [INFO] Airavata Credential Store ......................... SUCCESS [
>>>  6.539
>>>> s]
>>>> [INFO] GSISSH Library .................................... SUCCESS [
>>> 20.706
>>>> s]
>>>> [INFO] Airavata GFac ..................................... SUCCESS [
>>>  0.066
>>>> s]
>>>> [INFO] Airavata GFac Core ................................ SUCCESS [
>>> 44.143
>>>> s]
>>>> [INFO] Airavata GFac Core ................................ SUCCESS [
>>>  8.396
>>>> s]
>>>> [INFO] Airavata Message Box .............................. SUCCESS [
>>>  7.185
>>>> s]
>>>> [INFO] Airavata Message Broker ........................... SUCCESS [
>>> 10.017
>>>> s]
>>>> [INFO] Airavata Workflow Component ....................... SUCCESS [
>>>  3.935
>>>> s]
>>>> [INFO] Airavata Workflow Component Node .................. SUCCESS [
>>>  0.939
>>>> s]
>>>> [INFO] Complex Math Service .............................. SUCCESS [
>>>  1.962
>>>> s]
>>>> [INFO] Echo Service ...................................... SUCCESS [
>>>  1.424
>>>> s]
>>>> [INFO] Levenshtein Distance Service ...................... SUCCESS [
>>>  1.563
>>>> s]
>>>> [INFO] Simple Math Service ............................... SUCCESS [
>>>  1.608
>>>> s]
>>>> [INFO] samples ........................................... SUCCESS [
>>>  0.111
>>>> s]
>>>> [INFO] Airavata Samples .................................. SUCCESS [
>>>  3.433
>>>> s]
>>>> [INFO] Airavata JPA Registry ............................. SUCCESS [
>>> 21.636
>>>> s]
>>>> [INFO] Airavata REST ..................................... SUCCESS [
>>>  0.122
>>>> s]
>>>> [INFO] airavata-rest-mappings ............................ SUCCESS [
>>>  6.194
>>>> s]
>>>> [INFO] airavata-rest-client .............................. SUCCESS [
>>>  9.103
>>>> s]
>>>> [INFO] Airavata XBaya .................................... SUCCESS [01:04
>>>> min]
>>>> [INFO] Airavata JSON ..................................... SUCCESS [
>>>  2.264
>>>> s]
>>>> [INFO] Airavata Registry Service ......................... SUCCESS [
>>>  5.493
>>>> s]
>>>> [INFO] Airavata Registry Test ............................ SUCCESS [
>>>  1.690
>>>> s]
>>>> [INFO] Airavata Security Implementation .................. SUCCESS [
>>>  4.300
>>>> s]
>>>> [INFO] airavata-rest-services ............................ SUCCESS [
>>>  8.155
>>>> s]
>>>> [INFO] airavata-rest-service-webapp ...................... SUCCESS [
>>> 18.878
>>>> s]
>>>> [INFO] Airavata Interpreter Service Handler .............. SUCCESS [
>>> 11.737
>>>> s]
>>>> [INFO] Airavata Tools .................................... SUCCESS [
>>>  0.103
>>>> s]
>>>> [INFO] Airavata Phoebus Integration ...................... SUCCESS [
>>>  9.698
>>>> s]
>>>> [INFO] registry-tool ..................................... SUCCESS [
>>> 10.514
>>>> s]
>>>> [INFO] SampleGateway Maven Webapp ........................ SUCCESS [
>>> 18.346
>>>> s]
>>>> [INFO] distribution ...................................... SUCCESS [
>>>  0.122
>>>> s]
>>>> [INFO] Samples - Airavata Client Samples ................. SUCCESS [
>>>  0.111
>>>> s]
>>>> [INFO] Samples - Workflow Create Application ............. SUCCESS [
>>>  5.839
>>>> s]
>>>> [INFO] Samples - Workflow Execution ...................... SUCCESS [
>>>  5.045
>>>> s]
>>>> [INFO] Airavata Embedded Tomcat Implementation ........... SUCCESS [
>>>  4.155
>>>> s]
>>>> [INFO] Airavata Test Suite ............................... SUCCESS [
>>>  4.902
>>>> s]
>>>> [INFO] Airavata server distribution ...................... SUCCESS [02:33
>>>> min]
>>>> [INFO] Airavata client distribution ...................... SUCCESS [
>>> 37.303
>>>> s]
>>>> [INFO] Airavata xbaya-gui distribution ................... SUCCESS [03:45
>>>> min]
>>>> [INFO] Airavata release artifacts ........................ SUCCESS [
>>> 37.635
>>>> s]
>>>> [INFO] Airavata Integration Tests ........................ FAILURE [04:16
>>>> min]
>>>> [INFO]
>>>> ------------------------------------------------------------------------
>>>> [INFO] BUILD FAILURE
>>>> [INFO]
>>>> ------------------------------------------------------------------------
>>>> [INFO] Total time: 21:20 min
>>>> [INFO] Finished at: 2014-03-05T23:30:24+05:30
>>>> [INFO] Final Memory: 68M/1262M
>>>> [INFO]
>>>> ------------------------------------------------------------------------
>>>> [ERROR] Failed to execute goal
>>>> org.codehaus.cargo:cargo-maven2-plugin:1.3.1:star
>>>> t (start-container) on project integration-tests: Execution
>>> start-container
>>>> of g
>>>> oal org.codehaus.cargo:cargo-maven2-plugin:1.3.1:start failed: Failed to
>>>> start t
>>>> he Tomcat 7.x container. Deployable [
>>>> http://localhost:8080/cargocpc/index.html]
>>>> failed to finish deploying within the timeout period [120000]. The
>>>> Deployable st
>>>> ate is thus unknown. -> [Help 1]
>>>>
>>> ____________________________________________________________________________
>>>> Thanks,
>>>> Nadeem.
>>>>
>>>>
>>>> On Wed, Mar 5, 2014 at 10:34 PM, Supun Nakandala
>>>> <supun.nakandala@gmail.com>wrote:
>>>>
>>>>> Hi Nadeem,
>>>>>
>>>>> I also got this error sometimes. Since I had previously build Airavata
>>>>> successfully  in my local machine I used the maven offline build (mvn
-o
>>>>> clean install) so that the dependencies are not downloaded again from
>>>>> remote sites.
>>>>>
>>>>> Regards
>>>>> Supun
>>>>>
>>>>>
>>>>>
>>>>> On Wed, Mar 5, 2014 at 10:22 PM, Nadeem Anjum <nadeem.cs.iit@gmail.com
>>>> wrote:
>>>>>> Hi all,
>>>>>>
>>>>>> I am getting the following error while building airavata from source
>>>>>> (0.11 release):
>>>>>> ______________________________________________________________________
>>>>>>
>>>>>> Downloading:
>>>>>>
>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all/de/fzj/unicore/jsdl-xmlbeans/2.1.1-SNAPSHOT/maven-metadata.xml
>>>>>> [WARNING] Could not transfer metadata
>>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml from/to
>>>>>> ogce.m2.all (
>>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>>> community.ucs.indiana.edu
>>>>>> [WARNING] Failure to transfer
>>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml from
>>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.allwas
>>>>>> cached in the local repository, resolution will not be reattempted
>>> until
>>>>>> the update interval of ogce.m2.all has elapsed or updates are forced.
>>>>>> Original error: Could not transfer metadata
>>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml from/to
>>>>>> ogce.m2.all (
>>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>>> community.ucs.indiana.edu
>>>>>>
>>>>>> [ERROR] Failed to execute goal on project airavata-gfac-core: Could
not
>>>>>> resolve dependencies for project
>>>>>> org.apache.airavata:airavata-gfac-core:jar:0.11: Failed to collect
>>>>>> dependencies at eu.unicore:ogsabes-client:jar:1.7.0-rc ->
>>>>>> eu.unicore:uas-client:jar:1.7.0-rc ->
>>>>>> eu.unicore.services:use-wsrfclient:jar:3.0.0-rc ->
>>>>>> org.apache.xmlbeans:xmlbeans-xpath:jar:2.6.0 ->
>>> net.sf.saxon:saxon:jar:9:
>>>>>> Failed to read artifact descriptor for net.sf.saxon:saxon:jar:9:
Could
>>> not
>>>>>> transfer artifact net.sf.saxon:saxon:pom:9 from/to ogce.m2.all (
>>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>>> community.ucs.indiana.edu: Unknown host community.ucs.indiana.edu
->
>>>>>> [Help 1]
>>>>>>
>>>>>>
>>> __________________________________________________________________________________________________
>>>>>> Apparently,
>>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all
>>>>>> is'nt accessible over browser as well.
>>>>>>
>>>>>> Could anyone suggest a possible solution?
>>>>>>
>>>>>> Thanks,
>>>>>> Nadeem
>>>>>>
>>>>> --
>>>>> Thank you
>>>>> Supun Nakandala
>>>>> Dept. Computer Science and Engineering
>>>>> University of Moratuwa
>>>>>


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