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From Marlon Pierce <marpi...@iu.edu>
Subject Re: Error while building airavata
Date Wed, 05 Mar 2014 18:58:26 GMT
I had no problems with the build with -Dmaven.tests.skip=true but needed
to use the -o flag, as discussed below.  You can skip the integration
tests by commenting this out from the top level pom. Please file a bug
in Jira for this. 

Release 0.11 had some dependencies on optional jars that were downloaded
from an Archiva server (community.ucs.indiana.edu).  This got hacked
because of a security flaw in the Archiva release, so we took it down. 
This was bad practice in any case.

Depending on what you are doing, you may be better off looking at the
trunk.  Release 0.12 is coming.

Marlon


On 3/5/14 1:32 PM, Nadeem Anjum wrote:
> Hi Marlon,
>
> I had built with "mvn clean install -Dmaven.test.skip=true" itself. This
> skips the other tests, but still builds Airavata Integration tests.
>
> Moreover, I am building the 0.11 release, that should not have the recent
> changes right?
>
> Thanks,
> Nadeem
>
>
> On Wed, Mar 5, 2014 at 11:57 PM, Marlon Pierce <marpierc@iu.edu> wrote:
>
>> Try "mvn clean install -Dmaven.test.skip=true" to skip the integration
>> tests.  Airavata is undergoing a lot of fundamental changes as we work
>> out the Thrift API, and this has broken many older tests.
>>
>>
>> Marlon
>>
>> On 3/5/14 1:13 PM, Nadeem Anjum wrote:
>>> Thanks Supun. I fixed the previous issue with your suggestion.
>>>
>>> But I am still getting an error towards the end while building
>> Integration
>>> Tests. Below are last few lines of the log. Any ideas on how to fix this?
>>>
>>>
>> LOG:______________________________________________________________________
>>> [INFO] [talledLocalContainer]   ... 29 more
>>> [INFO] [talledLocalContainer] Caused by: java.lang.RuntimeException:
>>> Database fa
>>> ilure
>>> [INFO] [talledLocalContainer]   at
>>> org.apache.airavata.registry.services.Registr
>>> yService.initializeDB(RegistryService.java:140)
>>> [INFO] [talledLocalContainer]   at
>>> org.apache.airavata.registry.services.Registr
>>> yService.startUp(RegistryService.java:64)
>>> [INFO] [talledLocalContainer]   at
>>> org.apache.axis2.deployment.ServiceBuilder.lo
>>> adServiceLifeCycleClass(ServiceBuilder.java:518)
>>> [INFO] [talledLocalContainer]   ... 30 more
>>> [INFO] [talledLocalContainer] [INFO]
>>> org.apache.axis2.deployment.DeploymentExcep
>>> tion: Database failure
>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>> airavata-simple-math
>>> -service-0.11.aar -
>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modul
>>>
>> es/integration-tests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF
>>> /services/airavata-simple-math-service-0.11.aar
>>> [INFO] [talledLocalContainer]
>>> DriverClassName=org.apache.derby.jdbc.ClientDriver
>>>
>> ,Url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;passw
>>> ord=airavata,Username=airavata,Password=airavata,validationQuery=SELECT 1
>>> from C
>>>
>> onfiguration,MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,t
>>> estOnBorrow=true
>>> [INFO] [talledLocalContainer] 1  airavata_data  INFO   [Thread-6]
>>> openjpa.Runtim
>>> e - Starting OpenJPA 2.2.0
>>> [INFO] [talledLocalContainer] 27  airavata_data  INFO   [Thread-6]
>>> openjpa.jdbc.
>>> JDBC - Using dictionary class
>> "org.apache.openjpa.jdbc.sql.DerbyDictionary"
>>> (Apa
>>> che Derby 10.9.1.0 - (1344872) ,Apache Derby Network Client JDBC Driver
>>> 10.9.1.0
>>>  - (1344872)).
>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>> airavata-xbaya-gui-0
>>> .11.jar -
>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integra
>>>
>> tion-tests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/
>>> airavata-xbaya-gui-0.11.jar
>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>> echo-service-0.11.aa
>>> r -
>>>
>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integration-t
>> ests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/echo-s
>>> ervice-0.11.aar
>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>> version-1.5.1.aar -
>>>
>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integration-tests
>> /target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/version-1.
>>> 5.1.aar
>>> [INFO] [talledLocalContainer] Mar 05, 2014 11:30:17 PM
>>> org.apache.catalina.start
>>> up.HostConfig deployWAR
>>> [INFO] [talledLocalContainer] INFO: Deploying web application archive
>>> C:\Users\N
>>>
>> adeem\workspace\airavata-airavata-0.11\modules\integration-tests\target\apache-t
>>> omcat-7.0.41\webapps\airavata.war
>>> [INFO] [yer.DeployerWatchdog] Deployable [
>>> http://localhost:8080/cargocpc/index.h
>>> tml] failed to finish deploying within the timeout period [120000]. The
>>> Deployab
>>> le state is thus unknown.
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [INFO] Reactor Summary:
>>> [INFO]
>>> [INFO] Airavata .......................................... SUCCESS [
>>  9.553
>>> s]
>>> [INFO] Airavata Commons .................................. SUCCESS [
>>  0.175
>>> s]
>>> [INFO] Airavata Common Utilities ......................... SUCCESS [
>> 11.220
>>> s]
>>> [INFO] Airavata GFac Schema Utilities .................... SUCCESS [01:11
>>> min]
>>> [INFO] Airavata Registry ................................. SUCCESS [
>>  0.134
>>> s]
>>> [INFO] Airavata Registry API ............................. SUCCESS [
>>  8.761
>>> s]
>>> [INFO] Airavata Workflow Model Parent .................... SUCCESS [
>>  0.076
>>> s]
>>> [INFO] Airavata Workflow Model Core ...................... SUCCESS [
>> 12.022
>>> s]
>>> [INFO] Airavata WS Messenger ............................. SUCCESS [
>>  0.144
>>> s]
>>> [INFO] Airavata Messenger Commons ........................ SUCCESS [
>>  7.035
>>> s]
>>> [INFO] Airavata Messenger Client ......................... SUCCESS [
>>  7.800
>>> s]
>>> [INFO] Airavata WS Monitor ............................... SUCCESS [
>>  5.838
>>> s]
>>> [INFO] Airavata Workflow Execution Context ............... SUCCESS [
>> 14.451
>>> s]
>>> [INFO] Airavata Thrift ................................... SUCCESS [
>>  0.113
>>> s]
>>> [INFO] Airavata Interpreter Service ...................... SUCCESS [
>>  9.276
>>> s]
>>> [INFO] Airavata Interpreter Service Client ............... SUCCESS [
>>  2.014
>>> s]
>>> [INFO] Airavata Client ................................... SUCCESS [
>> 45.515
>>> s]
>>> [INFO] Airavata Workflow Tracking ........................ SUCCESS [
>> 35.333
>>> s]
>>> [INFO] Airavata Credential Store ......................... SUCCESS [
>>  6.539
>>> s]
>>> [INFO] GSISSH Library .................................... SUCCESS [
>> 20.706
>>> s]
>>> [INFO] Airavata GFac ..................................... SUCCESS [
>>  0.066
>>> s]
>>> [INFO] Airavata GFac Core ................................ SUCCESS [
>> 44.143
>>> s]
>>> [INFO] Airavata GFac Core ................................ SUCCESS [
>>  8.396
>>> s]
>>> [INFO] Airavata Message Box .............................. SUCCESS [
>>  7.185
>>> s]
>>> [INFO] Airavata Message Broker ........................... SUCCESS [
>> 10.017
>>> s]
>>> [INFO] Airavata Workflow Component ....................... SUCCESS [
>>  3.935
>>> s]
>>> [INFO] Airavata Workflow Component Node .................. SUCCESS [
>>  0.939
>>> s]
>>> [INFO] Complex Math Service .............................. SUCCESS [
>>  1.962
>>> s]
>>> [INFO] Echo Service ...................................... SUCCESS [
>>  1.424
>>> s]
>>> [INFO] Levenshtein Distance Service ...................... SUCCESS [
>>  1.563
>>> s]
>>> [INFO] Simple Math Service ............................... SUCCESS [
>>  1.608
>>> s]
>>> [INFO] samples ........................................... SUCCESS [
>>  0.111
>>> s]
>>> [INFO] Airavata Samples .................................. SUCCESS [
>>  3.433
>>> s]
>>> [INFO] Airavata JPA Registry ............................. SUCCESS [
>> 21.636
>>> s]
>>> [INFO] Airavata REST ..................................... SUCCESS [
>>  0.122
>>> s]
>>> [INFO] airavata-rest-mappings ............................ SUCCESS [
>>  6.194
>>> s]
>>> [INFO] airavata-rest-client .............................. SUCCESS [
>>  9.103
>>> s]
>>> [INFO] Airavata XBaya .................................... SUCCESS [01:04
>>> min]
>>> [INFO] Airavata JSON ..................................... SUCCESS [
>>  2.264
>>> s]
>>> [INFO] Airavata Registry Service ......................... SUCCESS [
>>  5.493
>>> s]
>>> [INFO] Airavata Registry Test ............................ SUCCESS [
>>  1.690
>>> s]
>>> [INFO] Airavata Security Implementation .................. SUCCESS [
>>  4.300
>>> s]
>>> [INFO] airavata-rest-services ............................ SUCCESS [
>>  8.155
>>> s]
>>> [INFO] airavata-rest-service-webapp ...................... SUCCESS [
>> 18.878
>>> s]
>>> [INFO] Airavata Interpreter Service Handler .............. SUCCESS [
>> 11.737
>>> s]
>>> [INFO] Airavata Tools .................................... SUCCESS [
>>  0.103
>>> s]
>>> [INFO] Airavata Phoebus Integration ...................... SUCCESS [
>>  9.698
>>> s]
>>> [INFO] registry-tool ..................................... SUCCESS [
>> 10.514
>>> s]
>>> [INFO] SampleGateway Maven Webapp ........................ SUCCESS [
>> 18.346
>>> s]
>>> [INFO] distribution ...................................... SUCCESS [
>>  0.122
>>> s]
>>> [INFO] Samples - Airavata Client Samples ................. SUCCESS [
>>  0.111
>>> s]
>>> [INFO] Samples - Workflow Create Application ............. SUCCESS [
>>  5.839
>>> s]
>>> [INFO] Samples - Workflow Execution ...................... SUCCESS [
>>  5.045
>>> s]
>>> [INFO] Airavata Embedded Tomcat Implementation ........... SUCCESS [
>>  4.155
>>> s]
>>> [INFO] Airavata Test Suite ............................... SUCCESS [
>>  4.902
>>> s]
>>> [INFO] Airavata server distribution ...................... SUCCESS [02:33
>>> min]
>>> [INFO] Airavata client distribution ...................... SUCCESS [
>> 37.303
>>> s]
>>> [INFO] Airavata xbaya-gui distribution ................... SUCCESS [03:45
>>> min]
>>> [INFO] Airavata release artifacts ........................ SUCCESS [
>> 37.635
>>> s]
>>> [INFO] Airavata Integration Tests ........................ FAILURE [04:16
>>> min]
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [INFO] BUILD FAILURE
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [INFO] Total time: 21:20 min
>>> [INFO] Finished at: 2014-03-05T23:30:24+05:30
>>> [INFO] Final Memory: 68M/1262M
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [ERROR] Failed to execute goal
>>> org.codehaus.cargo:cargo-maven2-plugin:1.3.1:star
>>> t (start-container) on project integration-tests: Execution
>> start-container
>>> of g
>>> oal org.codehaus.cargo:cargo-maven2-plugin:1.3.1:start failed: Failed to
>>> start t
>>> he Tomcat 7.x container. Deployable [
>>> http://localhost:8080/cargocpc/index.html]
>>> failed to finish deploying within the timeout period [120000]. The
>>> Deployable st
>>> ate is thus unknown. -> [Help 1]
>>>
>> ____________________________________________________________________________
>>> Thanks,
>>> Nadeem.
>>>
>>>
>>> On Wed, Mar 5, 2014 at 10:34 PM, Supun Nakandala
>>> <supun.nakandala@gmail.com>wrote:
>>>
>>>> Hi Nadeem,
>>>>
>>>> I also got this error sometimes. Since I had previously build Airavata
>>>> successfully  in my local machine I used the maven offline build (mvn -o
>>>> clean install) so that the dependencies are not downloaded again from
>>>> remote sites.
>>>>
>>>> Regards
>>>> Supun
>>>>
>>>>
>>>>
>>>> On Wed, Mar 5, 2014 at 10:22 PM, Nadeem Anjum <nadeem.cs.iit@gmail.com
>>> wrote:
>>>>> Hi all,
>>>>>
>>>>> I am getting the following error while building airavata from source
>>>>> (0.11 release):
>>>>> ______________________________________________________________________
>>>>>
>>>>> Downloading:
>>>>>
>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all/de/fzj/unicore/jsdl-xmlbeans/2.1.1-SNAPSHOT/maven-metadata.xml
>>>>> [WARNING] Could not transfer metadata
>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml from/to
>>>>> ogce.m2.all (
>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>> community.ucs.indiana.edu
>>>>> [WARNING] Failure to transfer
>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml from
>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.allwas
>>>>> cached in the local repository, resolution will not be reattempted
>> until
>>>>> the update interval of ogce.m2.all has elapsed or updates are forced.
>>>>> Original error: Could not transfer metadata
>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml from/to
>>>>> ogce.m2.all (
>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>> community.ucs.indiana.edu
>>>>>
>>>>> [ERROR] Failed to execute goal on project airavata-gfac-core: Could not
>>>>> resolve dependencies for project
>>>>> org.apache.airavata:airavata-gfac-core:jar:0.11: Failed to collect
>>>>> dependencies at eu.unicore:ogsabes-client:jar:1.7.0-rc ->
>>>>> eu.unicore:uas-client:jar:1.7.0-rc ->
>>>>> eu.unicore.services:use-wsrfclient:jar:3.0.0-rc ->
>>>>> org.apache.xmlbeans:xmlbeans-xpath:jar:2.6.0 ->
>> net.sf.saxon:saxon:jar:9:
>>>>> Failed to read artifact descriptor for net.sf.saxon:saxon:jar:9: Could
>> not
>>>>> transfer artifact net.sf.saxon:saxon:pom:9 from/to ogce.m2.all (
>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>> community.ucs.indiana.edu: Unknown host community.ucs.indiana.edu ->
>>>>> [Help 1]
>>>>>
>>>>>
>> __________________________________________________________________________________________________
>>>>> Apparently,
>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all
>>>>> is'nt accessible over browser as well.
>>>>>
>>>>> Could anyone suggest a possible solution?
>>>>>
>>>>> Thanks,
>>>>> Nadeem
>>>>>
>>>>
>>>> --
>>>> Thank you
>>>> Supun Nakandala
>>>> Dept. Computer Science and Engineering
>>>> University of Moratuwa
>>>>
>>


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