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From Marlon Pierce <marpi...@iu.edu>
Subject Re: Error while building airavata
Date Wed, 05 Mar 2014 18:40:02 GMT
I built from trunk, not 0.11.  Not sure why 0.11 would fail here. 


Marlon

On 3/5/14 1:32 PM, Nadeem Anjum wrote:
> Hi Marlon,
>
> I had built with "mvn clean install -Dmaven.test.skip=true" itself. This
> skips the other tests, but still builds Airavata Integration tests.
>
> Moreover, I am building the 0.11 release, that should not have the recent
> changes right?
>
> Thanks,
> Nadeem
>
>
> On Wed, Mar 5, 2014 at 11:57 PM, Marlon Pierce <marpierc@iu.edu> wrote:
>
>> Try "mvn clean install -Dmaven.test.skip=true" to skip the integration
>> tests.  Airavata is undergoing a lot of fundamental changes as we work
>> out the Thrift API, and this has broken many older tests.
>>
>>
>> Marlon
>>
>> On 3/5/14 1:13 PM, Nadeem Anjum wrote:
>>> Thanks Supun. I fixed the previous issue with your suggestion.
>>>
>>> But I am still getting an error towards the end while building
>> Integration
>>> Tests. Below are last few lines of the log. Any ideas on how to fix this?
>>>
>>>
>> LOG:______________________________________________________________________
>>> [INFO] [talledLocalContainer]   ... 29 more
>>> [INFO] [talledLocalContainer] Caused by: java.lang.RuntimeException:
>>> Database fa
>>> ilure
>>> [INFO] [talledLocalContainer]   at
>>> org.apache.airavata.registry.services.Registr
>>> yService.initializeDB(RegistryService.java:140)
>>> [INFO] [talledLocalContainer]   at
>>> org.apache.airavata.registry.services.Registr
>>> yService.startUp(RegistryService.java:64)
>>> [INFO] [talledLocalContainer]   at
>>> org.apache.axis2.deployment.ServiceBuilder.lo
>>> adServiceLifeCycleClass(ServiceBuilder.java:518)
>>> [INFO] [talledLocalContainer]   ... 30 more
>>> [INFO] [talledLocalContainer] [INFO]
>>> org.apache.axis2.deployment.DeploymentExcep
>>> tion: Database failure
>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>> airavata-simple-math
>>> -service-0.11.aar -
>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modul
>>>
>> es/integration-tests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF
>>> /services/airavata-simple-math-service-0.11.aar
>>> [INFO] [talledLocalContainer]
>>> DriverClassName=org.apache.derby.jdbc.ClientDriver
>>>
>> ,Url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;passw
>>> ord=airavata,Username=airavata,Password=airavata,validationQuery=SELECT 1
>>> from C
>>>
>> onfiguration,MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,t
>>> estOnBorrow=true
>>> [INFO] [talledLocalContainer] 1  airavata_data  INFO   [Thread-6]
>>> openjpa.Runtim
>>> e - Starting OpenJPA 2.2.0
>>> [INFO] [talledLocalContainer] 27  airavata_data  INFO   [Thread-6]
>>> openjpa.jdbc.
>>> JDBC - Using dictionary class
>> "org.apache.openjpa.jdbc.sql.DerbyDictionary"
>>> (Apa
>>> che Derby 10.9.1.0 - (1344872) ,Apache Derby Network Client JDBC Driver
>>> 10.9.1.0
>>>  - (1344872)).
>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>> airavata-xbaya-gui-0
>>> .11.jar -
>>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integra
>>>
>> tion-tests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/
>>> airavata-xbaya-gui-0.11.jar
>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>> echo-service-0.11.aa
>>> r -
>>>
>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integration-t
>> ests/target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/echo-s
>>> ervice-0.11.aar
>>> [INFO] [talledLocalContainer] [INFO] Deploying Web service:
>>> version-1.5.1.aar -
>>>
>> file:/C:/Users/Nadeem/workspace/airavata-airavata-0.11/modules/integration-tests
>> /target/apache-tomcat-7.0.41/webapps/airavata-server/WEB-INF/services/version-1.
>>> 5.1.aar
>>> [INFO] [talledLocalContainer] Mar 05, 2014 11:30:17 PM
>>> org.apache.catalina.start
>>> up.HostConfig deployWAR
>>> [INFO] [talledLocalContainer] INFO: Deploying web application archive
>>> C:\Users\N
>>>
>> adeem\workspace\airavata-airavata-0.11\modules\integration-tests\target\apache-t
>>> omcat-7.0.41\webapps\airavata.war
>>> [INFO] [yer.DeployerWatchdog] Deployable [
>>> http://localhost:8080/cargocpc/index.h
>>> tml] failed to finish deploying within the timeout period [120000]. The
>>> Deployab
>>> le state is thus unknown.
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [INFO] Reactor Summary:
>>> [INFO]
>>> [INFO] Airavata .......................................... SUCCESS [
>>  9.553
>>> s]
>>> [INFO] Airavata Commons .................................. SUCCESS [
>>  0.175
>>> s]
>>> [INFO] Airavata Common Utilities ......................... SUCCESS [
>> 11.220
>>> s]
>>> [INFO] Airavata GFac Schema Utilities .................... SUCCESS [01:11
>>> min]
>>> [INFO] Airavata Registry ................................. SUCCESS [
>>  0.134
>>> s]
>>> [INFO] Airavata Registry API ............................. SUCCESS [
>>  8.761
>>> s]
>>> [INFO] Airavata Workflow Model Parent .................... SUCCESS [
>>  0.076
>>> s]
>>> [INFO] Airavata Workflow Model Core ...................... SUCCESS [
>> 12.022
>>> s]
>>> [INFO] Airavata WS Messenger ............................. SUCCESS [
>>  0.144
>>> s]
>>> [INFO] Airavata Messenger Commons ........................ SUCCESS [
>>  7.035
>>> s]
>>> [INFO] Airavata Messenger Client ......................... SUCCESS [
>>  7.800
>>> s]
>>> [INFO] Airavata WS Monitor ............................... SUCCESS [
>>  5.838
>>> s]
>>> [INFO] Airavata Workflow Execution Context ............... SUCCESS [
>> 14.451
>>> s]
>>> [INFO] Airavata Thrift ................................... SUCCESS [
>>  0.113
>>> s]
>>> [INFO] Airavata Interpreter Service ...................... SUCCESS [
>>  9.276
>>> s]
>>> [INFO] Airavata Interpreter Service Client ............... SUCCESS [
>>  2.014
>>> s]
>>> [INFO] Airavata Client ................................... SUCCESS [
>> 45.515
>>> s]
>>> [INFO] Airavata Workflow Tracking ........................ SUCCESS [
>> 35.333
>>> s]
>>> [INFO] Airavata Credential Store ......................... SUCCESS [
>>  6.539
>>> s]
>>> [INFO] GSISSH Library .................................... SUCCESS [
>> 20.706
>>> s]
>>> [INFO] Airavata GFac ..................................... SUCCESS [
>>  0.066
>>> s]
>>> [INFO] Airavata GFac Core ................................ SUCCESS [
>> 44.143
>>> s]
>>> [INFO] Airavata GFac Core ................................ SUCCESS [
>>  8.396
>>> s]
>>> [INFO] Airavata Message Box .............................. SUCCESS [
>>  7.185
>>> s]
>>> [INFO] Airavata Message Broker ........................... SUCCESS [
>> 10.017
>>> s]
>>> [INFO] Airavata Workflow Component ....................... SUCCESS [
>>  3.935
>>> s]
>>> [INFO] Airavata Workflow Component Node .................. SUCCESS [
>>  0.939
>>> s]
>>> [INFO] Complex Math Service .............................. SUCCESS [
>>  1.962
>>> s]
>>> [INFO] Echo Service ...................................... SUCCESS [
>>  1.424
>>> s]
>>> [INFO] Levenshtein Distance Service ...................... SUCCESS [
>>  1.563
>>> s]
>>> [INFO] Simple Math Service ............................... SUCCESS [
>>  1.608
>>> s]
>>> [INFO] samples ........................................... SUCCESS [
>>  0.111
>>> s]
>>> [INFO] Airavata Samples .................................. SUCCESS [
>>  3.433
>>> s]
>>> [INFO] Airavata JPA Registry ............................. SUCCESS [
>> 21.636
>>> s]
>>> [INFO] Airavata REST ..................................... SUCCESS [
>>  0.122
>>> s]
>>> [INFO] airavata-rest-mappings ............................ SUCCESS [
>>  6.194
>>> s]
>>> [INFO] airavata-rest-client .............................. SUCCESS [
>>  9.103
>>> s]
>>> [INFO] Airavata XBaya .................................... SUCCESS [01:04
>>> min]
>>> [INFO] Airavata JSON ..................................... SUCCESS [
>>  2.264
>>> s]
>>> [INFO] Airavata Registry Service ......................... SUCCESS [
>>  5.493
>>> s]
>>> [INFO] Airavata Registry Test ............................ SUCCESS [
>>  1.690
>>> s]
>>> [INFO] Airavata Security Implementation .................. SUCCESS [
>>  4.300
>>> s]
>>> [INFO] airavata-rest-services ............................ SUCCESS [
>>  8.155
>>> s]
>>> [INFO] airavata-rest-service-webapp ...................... SUCCESS [
>> 18.878
>>> s]
>>> [INFO] Airavata Interpreter Service Handler .............. SUCCESS [
>> 11.737
>>> s]
>>> [INFO] Airavata Tools .................................... SUCCESS [
>>  0.103
>>> s]
>>> [INFO] Airavata Phoebus Integration ...................... SUCCESS [
>>  9.698
>>> s]
>>> [INFO] registry-tool ..................................... SUCCESS [
>> 10.514
>>> s]
>>> [INFO] SampleGateway Maven Webapp ........................ SUCCESS [
>> 18.346
>>> s]
>>> [INFO] distribution ...................................... SUCCESS [
>>  0.122
>>> s]
>>> [INFO] Samples - Airavata Client Samples ................. SUCCESS [
>>  0.111
>>> s]
>>> [INFO] Samples - Workflow Create Application ............. SUCCESS [
>>  5.839
>>> s]
>>> [INFO] Samples - Workflow Execution ...................... SUCCESS [
>>  5.045
>>> s]
>>> [INFO] Airavata Embedded Tomcat Implementation ........... SUCCESS [
>>  4.155
>>> s]
>>> [INFO] Airavata Test Suite ............................... SUCCESS [
>>  4.902
>>> s]
>>> [INFO] Airavata server distribution ...................... SUCCESS [02:33
>>> min]
>>> [INFO] Airavata client distribution ...................... SUCCESS [
>> 37.303
>>> s]
>>> [INFO] Airavata xbaya-gui distribution ................... SUCCESS [03:45
>>> min]
>>> [INFO] Airavata release artifacts ........................ SUCCESS [
>> 37.635
>>> s]
>>> [INFO] Airavata Integration Tests ........................ FAILURE [04:16
>>> min]
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [INFO] BUILD FAILURE
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [INFO] Total time: 21:20 min
>>> [INFO] Finished at: 2014-03-05T23:30:24+05:30
>>> [INFO] Final Memory: 68M/1262M
>>> [INFO]
>>> ------------------------------------------------------------------------
>>> [ERROR] Failed to execute goal
>>> org.codehaus.cargo:cargo-maven2-plugin:1.3.1:star
>>> t (start-container) on project integration-tests: Execution
>> start-container
>>> of g
>>> oal org.codehaus.cargo:cargo-maven2-plugin:1.3.1:start failed: Failed to
>>> start t
>>> he Tomcat 7.x container. Deployable [
>>> http://localhost:8080/cargocpc/index.html]
>>> failed to finish deploying within the timeout period [120000]. The
>>> Deployable st
>>> ate is thus unknown. -> [Help 1]
>>>
>> ____________________________________________________________________________
>>> Thanks,
>>> Nadeem.
>>>
>>>
>>> On Wed, Mar 5, 2014 at 10:34 PM, Supun Nakandala
>>> <supun.nakandala@gmail.com>wrote:
>>>
>>>> Hi Nadeem,
>>>>
>>>> I also got this error sometimes. Since I had previously build Airavata
>>>> successfully  in my local machine I used the maven offline build (mvn -o
>>>> clean install) so that the dependencies are not downloaded again from
>>>> remote sites.
>>>>
>>>> Regards
>>>> Supun
>>>>
>>>>
>>>>
>>>> On Wed, Mar 5, 2014 at 10:22 PM, Nadeem Anjum <nadeem.cs.iit@gmail.com
>>> wrote:
>>>>> Hi all,
>>>>>
>>>>> I am getting the following error while building airavata from source
>>>>> (0.11 release):
>>>>> ______________________________________________________________________
>>>>>
>>>>> Downloading:
>>>>>
>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all/de/fzj/unicore/jsdl-xmlbeans/2.1.1-SNAPSHOT/maven-metadata.xml
>>>>> [WARNING] Could not transfer metadata
>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml from/to
>>>>> ogce.m2.all (
>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>> community.ucs.indiana.edu
>>>>> [WARNING] Failure to transfer
>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml from
>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.allwas
>>>>> cached in the local repository, resolution will not be reattempted
>> until
>>>>> the update interval of ogce.m2.all has elapsed or updates are forced.
>>>>> Original error: Could not transfer metadata
>>>>> de.fzj.unicore:jsdl-xmlbeans:2.1.1-SNAPSHOT/maven-metadata.xml from/to
>>>>> ogce.m2.all (
>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>> community.ucs.indiana.edu
>>>>>
>>>>> [ERROR] Failed to execute goal on project airavata-gfac-core: Could not
>>>>> resolve dependencies for project
>>>>> org.apache.airavata:airavata-gfac-core:jar:0.11: Failed to collect
>>>>> dependencies at eu.unicore:ogsabes-client:jar:1.7.0-rc ->
>>>>> eu.unicore:uas-client:jar:1.7.0-rc ->
>>>>> eu.unicore.services:use-wsrfclient:jar:3.0.0-rc ->
>>>>> org.apache.xmlbeans:xmlbeans-xpath:jar:2.6.0 ->
>> net.sf.saxon:saxon:jar:9:
>>>>> Failed to read artifact descriptor for net.sf.saxon:saxon:jar:9: Could
>> not
>>>>> transfer artifact net.sf.saxon:saxon:pom:9 from/to ogce.m2.all (
>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all):
>>>>> community.ucs.indiana.edu: Unknown host community.ucs.indiana.edu ->
>>>>> [Help 1]
>>>>>
>>>>>
>> __________________________________________________________________________________________________
>>>>> Apparently,
>>>>> http://community.ucs.indiana.edu:9090/archiva/repository/ogce.m2.all
>>>>> is'nt accessible over browser as well.
>>>>>
>>>>> Could anyone suggest a possible solution?
>>>>>
>>>>> Thanks,
>>>>> Nadeem
>>>>>
>>>>
>>>> --
>>>> Thank you
>>>> Supun Nakandala
>>>> Dept. Computer Science and Engineering
>>>> University of Moratuwa
>>>>
>>


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