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From "Saminda Wijeratne (JIRA)" <j...@apache.org>
Subject [jira] [Comment Edited] (AIRAVATA-820) Parameter mismatching when using ForEach
Date Sat, 17 Aug 2013 06:35:47 GMT

    [ https://issues.apache.org/jira/browse/AIRAVATA-820?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13742862#comment-13742862
] 

Saminda Wijeratne edited comment on AIRAVATA-820 at 8/17/13 6:33 AM:
---------------------------------------------------------------------

Hi Shinyoung,

There was an issue in the simple foreach workflow as well. I fixed the problem and tested
both the simple/complex foreach example workflows provided (and for good measure tested 5/10
tutorials as well for stability of the fix). Assuming that it was the same issue you also
faced as I've understood please verify with the trunk. Again, thank you for noticing these
issues and reporting them back to us ASAP.

Committed revision 1514952.
                
      was (Author: samindaw):
    Hi Shinyoung,

There was an issue in the simple foreach workflow as well. I fixed the problem and tested
both the simple/complex foreach example workflows provided (and for good measure tested 5/10
tutorials as well for stability of the fix). Assuming that it was the same issue you also
faced as I've understood please verify with the trunk. Again, thank you for noticing these
issues and reporting them back to us ASAP.
                  
> Parameter mismatching when using ForEach 
> -----------------------------------------
>
>                 Key: AIRAVATA-820
>                 URL: https://issues.apache.org/jira/browse/AIRAVATA-820
>             Project: Airavata
>          Issue Type: Bug
>            Reporter: Shinyoung Ahn
>
> When an application have three parameters, fir and second parameter's type is String
type and
> the third parameter is StringArray type.
> Third parameter is connected to ForEach.
> When I execute the applications
> Airavat show unexpected behavior like below. 'Invoking service' do not use right value
that I expected…
> I expect the input parameters’ values of bwa_aln_fwd_p_invoke are same with the parameter
of 'WorkflowInvoked'.
> The Notification Message as follows
> -----------------------------------------------------------------------------------------------------------------
> Status'workflowInvoked' 
> <ns:workflowInvoked infoModelVersion="2.6"
>   xmlns:ns="http://airavata.apache.org/schemas/wft/2011/08">
>   <ns:notificationSource ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8"
ns:experimentID="Workflow1_b8721d2f-d131-4ec3-bbb3-6fe12f528ed8" />
>   <ns:timestamp>2013-04-11T09:15:41.988+09:00</ns:timestamp>
>   <ns:description>thread=4, refIndexFile=/home/team/genome/bwaindex/chr22.fa, Input=/home/team/genome/Demo/sample_1.fq.00,/home/team/genome/Demo/sample_1.fq.01,
Input=/home/team/genome/Demo/sample_1.fq.00,/home/team/genome/Demo/sample_1.fq.01</ns:description>
>   <ns:annotation />
>   <ns:initiator ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8" />
> </ns:workflowInvoked>
> -------------------------------------------------------------------------------------------------------------------
> Status: invokingService
> <ns:invokingService infoModelVersion="2.6"
>   xmlns:ns="http://airavata.apache.org/schemas/wft/2011/08">
>   <ns:notificationSource ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8"
ns:experimentID="Workflow1_b8721d2f-d131-4ec3-bbb3-6fe12f528ed8" />
>   <ns:timestamp>2013-04-11T09:15:42.240+09:00</ns:timestamp>
>   <ns:description>thread=/home/team/genome/Demo/sample_1.fq.00, refIndexFile=/home/team/genome/Demo/sample_1.fq.00,
bwdFqFile=/home/team/genome/Demo/sample_1.fq.00</ns:description>
>   <ns:annotation />
>   <ns:request>
>     <ns:body>
>       <n1:invoke_InputParams
>         xmlns:n1="http://airavata.apache.org/schemas/gfac/2012/12/bwa_aln_bwd/xsd">
>         <thread>/home/team/genome/Demo/sample_1.fq.00</thread>
>         <refIndexFile>/home/team/genome/Demo/sample_1.fq.00</refIndexFile>
>         <bwdFqFile>/home/team/genome/Demo/sample_1.fq.00</bwdFqFile>
>       </n1:invoke_InputParams>
>     </ns:body>
>   </ns:request>
>   <ns:receiver ns:serviceID="bwa_aln_bwd_invoke" ns:workflowID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8"
ns:workflowTimestep="0" ns:workflowNodeID="bwa_aln_bwd_invoke" />
> </ns:invokingService>
> -------------------------------------------------------------------------------------------------------------------------

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