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From Shameera Rathnayaka <shameerai...@gmail.com>
Subject Re: [jira] [Updated] (AIRAVATA-886) Exception in jpa-registry when building in ubuntu with java 64 bit
Date Thu, 08 Aug 2013 18:24:59 GMT
Hi Chathuri,

Now i am getting following build failure with clean repo, I have attached
surefire test report with this.

Tests in error:

testSave(org.apache.airavata.persistance.registry.jpa.GFacJobDataResourceTest):
DELETE on table 'GFAC_JOB_DATA' caused a violation of foreign key
constraint 'SQL130808233503570' for key (testJobID).  The statement has
been rolled back. {prepstmnt 1766794158 (..)

Tests run: 45, Failures: 0, Errors: 1, Skipped: 0


Thanks,
Shameera.


On Wed, Aug 7, 2013 at 8:55 PM, Chathuri Wimalasena <kamalasini@gmail.com>wrote:

> Hi Shameera,
>
> This should be fixed now. Can you take an update on trunk and let me know
> if you still getting the same error.
>
> Regards,
> Chathuri
>
>
>
> On Sat, Jul 13, 2013 at 2:59 PM, Shameera Rathnayaka <
> shameerainfo@gmail.com> wrote:
>
>>
>> On Sun, Jul 14, 2013 at 12:02 AM, Amila Jayasekara <
>> thejaka.amila@gmail.com> wrote:
>>
>>> Guess we found the cause for the issue. Soon we will commit a fix.
>>>
>>
>> Great, Thanks Amila.
>>
>> Cheers,
>> Shameera.
>>
>>
>>>
>>>
>>> Thanks
>>> AJ
>>>
>>>
>>> On Sat, Jul 13, 2013 at 2:00 PM, Shameera Rathnayaka <
>>> shameerainfo@gmail.com> wrote:
>>>
>>>> Hi devs,
>>>>
>>>> This test failure is still there, any workaround for this?
>>>>
>>>> Thanks,
>>>> Shameera.
>>>>
>>>>
>>>> On Fri, Jul 12, 2013 at 8:13 PM, Amila Jayasekara (JIRA) <
>>>> jira@apache.org> wrote:
>>>>
>>>>>
>>>>>      [
>>>>> https://issues.apache.org/jira/browse/AIRAVATA-886?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel]
>>>>>
>>>>> Amila Jayasekara updated AIRAVATA-886:
>>>>> --------------------------------------
>>>>>
>>>>>     Attachment:
>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.txt
>>>>>
>>>>> > Exception in jpa-registry when building in ubuntu with java 64 bit
>>>>> > ------------------------------------------------------------------
>>>>> >
>>>>> >                 Key: AIRAVATA-886
>>>>> >                 URL:
>>>>> https://issues.apache.org/jira/browse/AIRAVATA-886
>>>>> >             Project: Airavata
>>>>> >          Issue Type: Bug
>>>>> >          Components: Registry API
>>>>> >    Affects Versions: 0.8
>>>>> >         Environment: Linux sgg-build 3.5.0-36-generic #57-Ubuntu
SMP
>>>>> Wed Jun 19 15:10:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>>>> > java version "1.7.0_25"
>>>>> > Java(TM) SE Runtime Environment (build 1.7.0_25-b15)
>>>>> > Java HotSpot(TM) 64-Bit Server VM (build 23.25-b01, mixed mode)
>>>>> >            Reporter: Amila Jayasekara
>>>>> >             Fix For: 0.9
>>>>> >
>>>>> >         Attachments:
>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.txt
>>>>> >
>>>>> >
>>>>> > I am getting following exception when build airavata-jpa-registry
in
>>>>> above environment;
>>>>> > Surefire reports are also attached.
>>>>> >
>>>>> -------------------------------------------------------------------------------
>>>>> > Test set:
>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest
>>>>> >
>>>>> -------------------------------------------------------------------------------
>>>>> > Tests run: 4, Failures: 0, Errors: 1, Skipped: 0, Time elapsed:
>>>>> 0.779 sec <<< FAILURE!
>>>>> >
>>>>> testRemove(org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest)
>>>>>  Time elapsed: 0.225 sec  <<< ERROR!
>>>>> > <openjpa-2.2.0-r422266:1244990 fatal general error>
>>>>> org.apache.openjpa.persistence.PersistenceException: DELETE on table
>>>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>>>> rolled back. {prepstmnt 1269198549
>>>>> > DELETE FROM Experiment_Data
>>>>> >     WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID FROM
>>>>> >         Experiment_Data t0 WHERE (t0.experiment_ID = ?))
>>>>> > [params=(String) testExpID]} [code=-1, state=23503]
>>>>> > FailedObject: DELETE FROM Experiment_Data WHERE experiment_ID IN
>>>>> (SELECT DISTINCT t0.experiment_ID FROM Experiment_Data t0 WHERE
>>>>> (t0.experiment_ID = ?)) [java.lang.String]
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.sql.DBDictionary.narrow(DBDictionary.java:4912)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.sql.DBDictionary.newStoreException(DBDictionary.java:4878)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:136)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:78)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:579)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
>>>>> >       at
>>>>> org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
>>>>> >       at
>>>>> org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
>>>>> >       at
>>>>> org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
>>>>> >       at
>>>>> org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
>>>>> >       at
>>>>> org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
>>>>> >       at
>>>>> org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
>>>>> >       at
>>>>> org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
>>>>> >       at
>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>>> >       at
>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>> >       at
>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>> >       at junit.framework.TestCase.runTest(TestCase.java:168)
>>>>> >       at junit.framework.TestCase.runBare(TestCase.java:134)
>>>>> >       at junit.framework.TestResult$1.protect(TestResult.java:110)
>>>>> >       at junit.framework.TestResult.runProtected(TestResult.java:128)
>>>>> >       at junit.framework.TestResult.run(TestResult.java:113)
>>>>> >       at junit.framework.TestCase.run(TestCase.java:124)
>>>>> >       at junit.framework.TestSuite.runTest(TestSuite.java:232)
>>>>> >       at junit.framework.TestSuite.run(TestSuite.java:227)
>>>>> >       at
>>>>> org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
>>>>> >       at
>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
>>>>> >       at
>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
>>>>> >       at
>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>>> >       at
>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>> >       at
>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>> >       at
>>>>> org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
>>>>> >       at
>>>>> org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
>>>>> >       at
>>>>> org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
>>>>> >       at
>>>>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
>>>>> >       at
>>>>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
>>>>> > Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: DELETE
>>>>> on table 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>>>> rolled back. {prepstmnt 1269198549
>>>>> > DELETE FROM Experiment_Data
>>>>> >     WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID FROM
>>>>> >         Experiment_Data t0 WHERE (t0.experiment_ID = ?))
>>>>> > [params=(String) testExpID]} [code=-1, state=23503]
>>>>> >       at
>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:247)
>>>>> >       at
>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:223)
>>>>> >       at
>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.access$1000(LoggingConnectionDecorator.java:72)
>>>>> >       at
>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1162)
>>>>> >       at
>>>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
>>>>> >       ... 34 more
>>>>> > NestedThrowables:
>>>>> > java.sql.SQLIntegrityConstraintViolationException: DELETE on table
>>>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>>>> rolled back.
>>>>> >       at
>>>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>>>> Source)
>>>>> >       at
>>>>> org.apache.derby.client.am.SqlException.getSQLException(Unknown Source)
>>>>> >       at
>>>>> org.apache.derby.client.am.PreparedStatement.executeUpdate(Unknown Source)
>>>>> >       at
>>>>> org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
>>>>> >       at
>>>>> org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
>>>>> >       at
>>>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>>>> >       at
>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1160)
>>>>> >       at
>>>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
>>>>> >       at
>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
>>>>> >       at
>>>>> org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
>>>>> >       at
>>>>> org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
>>>>> >       at
>>>>> org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
>>>>> >       at
>>>>> org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
>>>>> >       at
>>>>> org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
>>>>> >       at
>>>>> org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
>>>>> >       at
>>>>> org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
>>>>> >       at
>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>>> >       at
>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>> >       at
>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>> >       at junit.framework.TestCase.runTest(TestCase.java:168)
>>>>> >       at junit.framework.TestCase.runBare(TestCase.java:134)
>>>>> >       at junit.framework.TestResult$1.protect(TestResult.java:110)
>>>>> >       at junit.framework.TestResult.runProtected(TestResult.java:128)
>>>>> >       at junit.framework.TestResult.run(TestResult.java:113)
>>>>> >       at junit.framework.TestCase.run(TestCase.java:124)
>>>>> >       at junit.framework.TestSuite.runTest(TestSuite.java:232)
>>>>> >       at junit.framework.TestSuite.run(TestSuite.java:227)
>>>>> >       at
>>>>> org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
>>>>> >       at
>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
>>>>> >       at
>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
>>>>> >       at
>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>>> >       at
>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>> >       at
>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>> >       at
>>>>> org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
>>>>> >       at
>>>>> org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
>>>>> >       at
>>>>> org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
>>>>> >       at
>>>>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
>>>>> >       at
>>>>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
>>>>> > Caused by: org.apache.derby.client.am.SqlException: DELETE on table
>>>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>>>> rolled back.
>>>>> >       at
>>>>> org.apache.derby.client.am.Statement.completeExecute(Unknown Source)
>>>>> >       at
>>>>> org.apache.derby.client.net.NetStatementReply.parseEXCSQLSTTreply(Unknown
>>>>> Source)
>>>>> >       at
>>>>> org.apache.derby.client.net.NetStatementReply.readExecute(Unknown Source)
>>>>> >       at
>>>>> org.apache.derby.client.net.StatementReply.readExecute(Unknown Source)
>>>>> >       at
>>>>> org.apache.derby.client.net.NetPreparedStatement.readExecute_(Unknown
>>>>> Source)
>>>>> >       at
>>>>> org.apache.derby.client.am.PreparedStatement.readExecute(Unknown Source)
>>>>> >       at
>>>>> org.apache.derby.client.am.PreparedStatement.flowExecute(Unknown Source)
>>>>> >       at
>>>>> org.apache.derby.client.am.PreparedStatement.executeUpdateX(Unknown Source)
>>>>> >       ... 43 more
>>>>>
>>>>> --
>>>>> This message is automatically generated by JIRA.
>>>>> If you think it was sent incorrectly, please contact your JIRA
>>>>> administrators
>>>>> For more information on JIRA, see:
>>>>> http://www.atlassian.com/software/jira
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Best Regards,
>>>> Shameera Rathnayaka.
>>>>
>>>> email: shameera AT apache.org , shameerainfo AT gmail.com
>>>> Blog : http://shameerarathnayaka.blogspot.com/
>>>>
>>>
>>>
>>
>>
>> --
>> Best Regards,
>> Shameera Rathnayaka.
>>
>> email: shameera AT apache.org , shameerainfo AT gmail.com
>> Blog : http://shameerarathnayaka.blogspot.com/
>>
>
>


-- 
Best Regards,
Shameera Rathnayaka.

email: shameera AT apache.org , shameerainfo AT gmail.com
Blog : http://shameerarathnayaka.blogspot.com/

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