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From Chathuri Wimalasena <kamalas...@gmail.com>
Subject Re: [jira] [Updated] (AIRAVATA-886) Exception in jpa-registry when building in ubuntu with java 64 bit
Date Thu, 08 Aug 2013 20:24:52 GMT
Thanks Shameera for testing this.

Regards,
Chathuri


On Thu, Aug 8, 2013 at 3:47 PM, Shameera Rathnayaka
<shameerainfo@gmail.com>wrote:

> Hi Chathuri,
>
> Issues have been solved, Build succeed with clean repo.
>
> Thanks,
> Shameera.
>
>
> On Fri, Aug 9, 2013 at 12:03 AM, Chathuri Wimalasena <kamalasini@gmail.com
> > wrote:
>
>> Hi Shameera,
>>
>> Saminda also faced the same issue in his ubuntu desktop. Can you again
>> take an update and check please.
>>
>> Regards,
>> Chathuri
>>
>>
>> On Thu, Aug 8, 2013 at 2:24 PM, Shameera Rathnayaka <
>> shameerainfo@gmail.com> wrote:
>>
>>> Hi Chathuri,
>>>
>>> Now i am getting following build failure with clean repo, I have
>>> attached surefire test report with this.
>>>
>>> Tests in error:
>>>
>>> testSave(org.apache.airavata.persistance.registry.jpa.GFacJobDataResourceTest):
>>> DELETE on table 'GFAC_JOB_DATA' caused a violation of foreign key
>>> constraint 'SQL130808233503570' for key (testJobID).  The statement has
>>> been rolled back. {prepstmnt 1766794158 (..)
>>>
>>> Tests run: 45, Failures: 0, Errors: 1, Skipped: 0
>>>
>>>
>>> Thanks,
>>> Shameera.
>>>
>>>
>>> On Wed, Aug 7, 2013 at 8:55 PM, Chathuri Wimalasena <
>>> kamalasini@gmail.com> wrote:
>>>
>>>> Hi Shameera,
>>>>
>>>> This should be fixed now. Can you take an update on trunk and let me
>>>> know if you still getting the same error.
>>>>
>>>> Regards,
>>>> Chathuri
>>>>
>>>>
>>>>
>>>> On Sat, Jul 13, 2013 at 2:59 PM, Shameera Rathnayaka <
>>>> shameerainfo@gmail.com> wrote:
>>>>
>>>>>
>>>>> On Sun, Jul 14, 2013 at 12:02 AM, Amila Jayasekara <
>>>>> thejaka.amila@gmail.com> wrote:
>>>>>
>>>>>> Guess we found the cause for the issue. Soon we will commit a fix.
>>>>>>
>>>>>
>>>>> Great, Thanks Amila.
>>>>>
>>>>> Cheers,
>>>>> Shameera.
>>>>>
>>>>>
>>>>>>
>>>>>>
>>>>>> Thanks
>>>>>> AJ
>>>>>>
>>>>>>
>>>>>> On Sat, Jul 13, 2013 at 2:00 PM, Shameera Rathnayaka <
>>>>>> shameerainfo@gmail.com> wrote:
>>>>>>
>>>>>>> Hi devs,
>>>>>>>
>>>>>>> This test failure is still there, any workaround for this?
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Shameera.
>>>>>>>
>>>>>>>
>>>>>>> On Fri, Jul 12, 2013 at 8:13 PM, Amila Jayasekara (JIRA) <
>>>>>>> jira@apache.org> wrote:
>>>>>>>
>>>>>>>>
>>>>>>>>      [
>>>>>>>> https://issues.apache.org/jira/browse/AIRAVATA-886?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel]
>>>>>>>>
>>>>>>>> Amila Jayasekara updated AIRAVATA-886:
>>>>>>>> --------------------------------------
>>>>>>>>
>>>>>>>>     Attachment:
>>>>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.txt
>>>>>>>>
>>>>>>>> > Exception in jpa-registry when building in ubuntu with
java 64 bit
>>>>>>>> > ------------------------------------------------------------------
>>>>>>>> >
>>>>>>>> >                 Key: AIRAVATA-886
>>>>>>>> >                 URL:
>>>>>>>> https://issues.apache.org/jira/browse/AIRAVATA-886
>>>>>>>> >             Project: Airavata
>>>>>>>> >          Issue Type: Bug
>>>>>>>> >          Components: Registry API
>>>>>>>> >    Affects Versions: 0.8
>>>>>>>> >         Environment: Linux sgg-build 3.5.0-36-generic
#57-Ubuntu
>>>>>>>> SMP Wed Jun 19 15:10:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>>>>>>> > java version "1.7.0_25"
>>>>>>>> > Java(TM) SE Runtime Environment (build 1.7.0_25-b15)
>>>>>>>> > Java HotSpot(TM) 64-Bit Server VM (build 23.25-b01,
mixed mode)
>>>>>>>> >            Reporter: Amila Jayasekara
>>>>>>>> >             Fix For: 0.9
>>>>>>>> >
>>>>>>>> >         Attachments:
>>>>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.txt
>>>>>>>> >
>>>>>>>> >
>>>>>>>> > I am getting following exception when build airavata-jpa-registry
>>>>>>>> in above environment;
>>>>>>>> > Surefire reports are also attached.
>>>>>>>> >
>>>>>>>> -------------------------------------------------------------------------------
>>>>>>>> > Test set:
>>>>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest
>>>>>>>> >
>>>>>>>> -------------------------------------------------------------------------------
>>>>>>>> > Tests run: 4, Failures: 0, Errors: 1, Skipped: 0, Time
elapsed:
>>>>>>>> 0.779 sec <<< FAILURE!
>>>>>>>> >
>>>>>>>> testRemove(org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest)
>>>>>>>>  Time elapsed: 0.225 sec  <<< ERROR!
>>>>>>>> > <openjpa-2.2.0-r422266:1244990 fatal general error>
>>>>>>>> org.apache.openjpa.persistence.PersistenceException: DELETE
on table
>>>>>>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>>>>>>> 'SQL130711163228212' for key (testWFInstance).  The statement
has been
>>>>>>>> rolled back. {prepstmnt 1269198549
>>>>>>>> > DELETE FROM Experiment_Data
>>>>>>>> >     WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID
FROM
>>>>>>>> >         Experiment_Data t0 WHERE (t0.experiment_ID =
?))
>>>>>>>> > [params=(String) testExpID]} [code=-1, state=23503]
>>>>>>>> > FailedObject: DELETE FROM Experiment_Data WHERE experiment_ID
IN
>>>>>>>> (SELECT DISTINCT t0.experiment_ID FROM Experiment_Data t0
WHERE
>>>>>>>> (t0.experiment_ID = ?)) [java.lang.String]
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.sql.DBDictionary.narrow(DBDictionary.java:4912)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.sql.DBDictionary.newStoreException(DBDictionary.java:4878)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:136)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:78)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:579)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
>>>>>>>> >       at
>>>>>>>> org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
>>>>>>>> >       at
>>>>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
>>>>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
>>>>>>>> Method)
>>>>>>>> >       at
>>>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>>>> >       at
>>>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>>>>> >       at junit.framework.TestCase.runTest(TestCase.java:168)
>>>>>>>> >       at junit.framework.TestCase.runBare(TestCase.java:134)
>>>>>>>> >       at junit.framework.TestResult$1.protect(TestResult.java:110)
>>>>>>>> >       at
>>>>>>>> junit.framework.TestResult.runProtected(TestResult.java:128)
>>>>>>>> >       at junit.framework.TestResult.run(TestResult.java:113)
>>>>>>>> >       at junit.framework.TestCase.run(TestCase.java:124)
>>>>>>>> >       at junit.framework.TestSuite.runTest(TestSuite.java:232)
>>>>>>>> >       at junit.framework.TestSuite.run(TestSuite.java:227)
>>>>>>>> >       at
>>>>>>>> org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
>>>>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
>>>>>>>> Method)
>>>>>>>> >       at
>>>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>>>> >       at
>>>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
>>>>>>>> > Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException:
>>>>>>>> DELETE on table 'WORKFLOW_DATA' caused a violation of foreign
key
>>>>>>>> constraint 'SQL130711163228212' for key (testWFInstance).
 The statement
>>>>>>>> has been rolled back. {prepstmnt 1269198549
>>>>>>>> > DELETE FROM Experiment_Data
>>>>>>>> >     WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID
FROM
>>>>>>>> >         Experiment_Data t0 WHERE (t0.experiment_ID =
?))
>>>>>>>> > [params=(String) testExpID]} [code=-1, state=23503]
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:247)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:223)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.access$1000(LoggingConnectionDecorator.java:72)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1162)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
>>>>>>>> >       ... 34 more
>>>>>>>> > NestedThrowables:
>>>>>>>> > java.sql.SQLIntegrityConstraintViolationException: DELETE
on
>>>>>>>> table 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>>>>>>> 'SQL130711163228212' for key (testWFInstance).  The statement
has been
>>>>>>>> rolled back.
>>>>>>>> >       at
>>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>>>>>>> Source)
>>>>>>>> >       at
>>>>>>>> org.apache.derby.client.am.SqlException.getSQLException(Unknown
Source)
>>>>>>>> >       at
>>>>>>>> org.apache.derby.client.am.PreparedStatement.executeUpdate(Unknown
Source)
>>>>>>>> >       at
>>>>>>>> org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
>>>>>>>> >       at
>>>>>>>> org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1160)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
>>>>>>>> >       at
>>>>>>>> org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
>>>>>>>> >       at
>>>>>>>> org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
>>>>>>>> >       at
>>>>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
>>>>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
>>>>>>>> Method)
>>>>>>>> >       at
>>>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>>>> >       at
>>>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>>>>> >       at junit.framework.TestCase.runTest(TestCase.java:168)
>>>>>>>> >       at junit.framework.TestCase.runBare(TestCase.java:134)
>>>>>>>> >       at junit.framework.TestResult$1.protect(TestResult.java:110)
>>>>>>>> >       at
>>>>>>>> junit.framework.TestResult.runProtected(TestResult.java:128)
>>>>>>>> >       at junit.framework.TestResult.run(TestResult.java:113)
>>>>>>>> >       at junit.framework.TestCase.run(TestCase.java:124)
>>>>>>>> >       at junit.framework.TestSuite.runTest(TestSuite.java:232)
>>>>>>>> >       at junit.framework.TestSuite.run(TestSuite.java:227)
>>>>>>>> >       at
>>>>>>>> org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
>>>>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
>>>>>>>> Method)
>>>>>>>> >       at
>>>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>>>> >       at
>>>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
>>>>>>>> >       at
>>>>>>>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
>>>>>>>> > Caused by: org.apache.derby.client.am.SqlException:
DELETE on
>>>>>>>> table 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>>>>>>> 'SQL130711163228212' for key (testWFInstance).  The statement
has been
>>>>>>>> rolled back.
>>>>>>>> >       at
>>>>>>>> org.apache.derby.client.am.Statement.completeExecute(Unknown
Source)
>>>>>>>> >       at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.parseEXCSQLSTTreply(Unknown
>>>>>>>> Source)
>>>>>>>> >       at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.readExecute(Unknown
Source)
>>>>>>>> >       at
>>>>>>>> org.apache.derby.client.net.StatementReply.readExecute(Unknown
Source)
>>>>>>>> >       at
>>>>>>>> org.apache.derby.client.net.NetPreparedStatement.readExecute_(Unknown
>>>>>>>> Source)
>>>>>>>> >       at
>>>>>>>> org.apache.derby.client.am.PreparedStatement.readExecute(Unknown
Source)
>>>>>>>> >       at
>>>>>>>> org.apache.derby.client.am.PreparedStatement.flowExecute(Unknown
Source)
>>>>>>>> >       at
>>>>>>>> org.apache.derby.client.am.PreparedStatement.executeUpdateX(Unknown
Source)
>>>>>>>> >       ... 43 more
>>>>>>>>
>>>>>>>> --
>>>>>>>> This message is automatically generated by JIRA.
>>>>>>>> If you think it was sent incorrectly, please contact your
JIRA
>>>>>>>> administrators
>>>>>>>> For more information on JIRA, see:
>>>>>>>> http://www.atlassian.com/software/jira
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Best Regards,
>>>>>>> Shameera Rathnayaka.
>>>>>>>
>>>>>>> email: shameera AT apache.org , shameerainfo AT gmail.com
>>>>>>> Blog : http://shameerarathnayaka.blogspot.com/
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Best Regards,
>>>>> Shameera Rathnayaka.
>>>>>
>>>>> email: shameera AT apache.org , shameerainfo AT gmail.com
>>>>> Blog : http://shameerarathnayaka.blogspot.com/
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> Best Regards,
>>> Shameera Rathnayaka.
>>>
>>> email: shameera AT apache.org , shameerainfo AT gmail.com
>>> Blog : http://shameerarathnayaka.blogspot.com/
>>>
>>
>>
>
>
> --
> Best Regards,
> Shameera Rathnayaka.
>
> email: shameera AT apache.org , shameerainfo AT gmail.com
> Blog : http://shameerarathnayaka.blogspot.com/
>

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