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From Chathuri Wimalasena <kamalas...@gmail.com>
Subject Re: [jira] [Updated] (AIRAVATA-886) Exception in jpa-registry when building in ubuntu with java 64 bit
Date Thu, 08 Aug 2013 18:33:47 GMT
Hi Shameera,

Saminda also faced the same issue in his ubuntu desktop. Can you again take
an update and check please.

Regards,
Chathuri


On Thu, Aug 8, 2013 at 2:24 PM, Shameera Rathnayaka
<shameerainfo@gmail.com>wrote:

> Hi Chathuri,
>
> Now i am getting following build failure with clean repo, I have attached
> surefire test report with this.
>
> Tests in error:
>
> testSave(org.apache.airavata.persistance.registry.jpa.GFacJobDataResourceTest):
> DELETE on table 'GFAC_JOB_DATA' caused a violation of foreign key
> constraint 'SQL130808233503570' for key (testJobID).  The statement has
> been rolled back. {prepstmnt 1766794158 (..)
>
> Tests run: 45, Failures: 0, Errors: 1, Skipped: 0
>
>
> Thanks,
> Shameera.
>
>
> On Wed, Aug 7, 2013 at 8:55 PM, Chathuri Wimalasena <kamalasini@gmail.com>wrote:
>
>> Hi Shameera,
>>
>> This should be fixed now. Can you take an update on trunk and let me know
>> if you still getting the same error.
>>
>> Regards,
>> Chathuri
>>
>>
>>
>> On Sat, Jul 13, 2013 at 2:59 PM, Shameera Rathnayaka <
>> shameerainfo@gmail.com> wrote:
>>
>>>
>>> On Sun, Jul 14, 2013 at 12:02 AM, Amila Jayasekara <
>>> thejaka.amila@gmail.com> wrote:
>>>
>>>> Guess we found the cause for the issue. Soon we will commit a fix.
>>>>
>>>
>>> Great, Thanks Amila.
>>>
>>> Cheers,
>>> Shameera.
>>>
>>>
>>>>
>>>>
>>>> Thanks
>>>> AJ
>>>>
>>>>
>>>> On Sat, Jul 13, 2013 at 2:00 PM, Shameera Rathnayaka <
>>>> shameerainfo@gmail.com> wrote:
>>>>
>>>>> Hi devs,
>>>>>
>>>>> This test failure is still there, any workaround for this?
>>>>>
>>>>> Thanks,
>>>>> Shameera.
>>>>>
>>>>>
>>>>> On Fri, Jul 12, 2013 at 8:13 PM, Amila Jayasekara (JIRA) <
>>>>> jira@apache.org> wrote:
>>>>>
>>>>>>
>>>>>>      [
>>>>>> https://issues.apache.org/jira/browse/AIRAVATA-886?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel]
>>>>>>
>>>>>> Amila Jayasekara updated AIRAVATA-886:
>>>>>> --------------------------------------
>>>>>>
>>>>>>     Attachment:
>>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.txt
>>>>>>
>>>>>> > Exception in jpa-registry when building in ubuntu with java
64 bit
>>>>>> > ------------------------------------------------------------------
>>>>>> >
>>>>>> >                 Key: AIRAVATA-886
>>>>>> >                 URL:
>>>>>> https://issues.apache.org/jira/browse/AIRAVATA-886
>>>>>> >             Project: Airavata
>>>>>> >          Issue Type: Bug
>>>>>> >          Components: Registry API
>>>>>> >    Affects Versions: 0.8
>>>>>> >         Environment: Linux sgg-build 3.5.0-36-generic #57-Ubuntu
>>>>>> SMP Wed Jun 19 15:10:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>>>>> > java version "1.7.0_25"
>>>>>> > Java(TM) SE Runtime Environment (build 1.7.0_25-b15)
>>>>>> > Java HotSpot(TM) 64-Bit Server VM (build 23.25-b01, mixed mode)
>>>>>> >            Reporter: Amila Jayasekara
>>>>>> >             Fix For: 0.9
>>>>>> >
>>>>>> >         Attachments:
>>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.txt
>>>>>> >
>>>>>> >
>>>>>> > I am getting following exception when build airavata-jpa-registry
>>>>>> in above environment;
>>>>>> > Surefire reports are also attached.
>>>>>> >
>>>>>> -------------------------------------------------------------------------------
>>>>>> > Test set:
>>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest
>>>>>> >
>>>>>> -------------------------------------------------------------------------------
>>>>>> > Tests run: 4, Failures: 0, Errors: 1, Skipped: 0, Time elapsed:
>>>>>> 0.779 sec <<< FAILURE!
>>>>>> >
>>>>>> testRemove(org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest)
>>>>>>  Time elapsed: 0.225 sec  <<< ERROR!
>>>>>> > <openjpa-2.2.0-r422266:1244990 fatal general error>
>>>>>> org.apache.openjpa.persistence.PersistenceException: DELETE on table
>>>>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>>>>> 'SQL130711163228212' for key (testWFInstance).  The statement has
been
>>>>>> rolled back. {prepstmnt 1269198549
>>>>>> > DELETE FROM Experiment_Data
>>>>>> >     WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID
FROM
>>>>>> >         Experiment_Data t0 WHERE (t0.experiment_ID = ?))
>>>>>> > [params=(String) testExpID]} [code=-1, state=23503]
>>>>>> > FailedObject: DELETE FROM Experiment_Data WHERE experiment_ID
IN
>>>>>> (SELECT DISTINCT t0.experiment_ID FROM Experiment_Data t0 WHERE
>>>>>> (t0.experiment_ID = ?)) [java.lang.String]
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.sql.DBDictionary.narrow(DBDictionary.java:4912)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.sql.DBDictionary.newStoreException(DBDictionary.java:4878)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:136)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:78)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:579)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
>>>>>> >       at
>>>>>> org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
>>>>>> >       at
>>>>>> org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
>>>>>> >       at
>>>>>> org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
>>>>>> >       at
>>>>>> org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
>>>>>> >       at
>>>>>> org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
>>>>>> >       at
>>>>>> org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
>>>>>> >       at
>>>>>> org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
>>>>>> >       at
>>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
>>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
>>>>>> >       at
>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>> >       at
>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>>> >       at junit.framework.TestCase.runTest(TestCase.java:168)
>>>>>> >       at junit.framework.TestCase.runBare(TestCase.java:134)
>>>>>> >       at junit.framework.TestResult$1.protect(TestResult.java:110)
>>>>>> >       at
>>>>>> junit.framework.TestResult.runProtected(TestResult.java:128)
>>>>>> >       at junit.framework.TestResult.run(TestResult.java:113)
>>>>>> >       at junit.framework.TestCase.run(TestCase.java:124)
>>>>>> >       at junit.framework.TestSuite.runTest(TestSuite.java:232)
>>>>>> >       at junit.framework.TestSuite.run(TestSuite.java:227)
>>>>>> >       at
>>>>>> org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
>>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
>>>>>> >       at
>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>> >       at
>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
>>>>>> > Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException:
>>>>>> DELETE on table 'WORKFLOW_DATA' caused a violation of foreign key
>>>>>> constraint 'SQL130711163228212' for key (testWFInstance).  The statement
>>>>>> has been rolled back. {prepstmnt 1269198549
>>>>>> > DELETE FROM Experiment_Data
>>>>>> >     WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID
FROM
>>>>>> >         Experiment_Data t0 WHERE (t0.experiment_ID = ?))
>>>>>> > [params=(String) testExpID]} [code=-1, state=23503]
>>>>>> >       at
>>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:247)
>>>>>> >       at
>>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:223)
>>>>>> >       at
>>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.access$1000(LoggingConnectionDecorator.java:72)
>>>>>> >       at
>>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1162)
>>>>>> >       at
>>>>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
>>>>>> >       ... 34 more
>>>>>> > NestedThrowables:
>>>>>> > java.sql.SQLIntegrityConstraintViolationException: DELETE on
table
>>>>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>>>>> 'SQL130711163228212' for key (testWFInstance).  The statement has
been
>>>>>> rolled back.
>>>>>> >       at
>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>>>>> Source)
>>>>>> >       at
>>>>>> org.apache.derby.client.am.SqlException.getSQLException(Unknown Source)
>>>>>> >       at
>>>>>> org.apache.derby.client.am.PreparedStatement.executeUpdate(Unknown
Source)
>>>>>> >       at
>>>>>> org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
>>>>>> >       at
>>>>>> org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
>>>>>> >       at
>>>>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>>>>> >       at
>>>>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1160)
>>>>>> >       at
>>>>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
>>>>>> >       at
>>>>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
>>>>>> >       at
>>>>>> org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
>>>>>> >       at
>>>>>> org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
>>>>>> >       at
>>>>>> org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
>>>>>> >       at
>>>>>> org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
>>>>>> >       at
>>>>>> org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
>>>>>> >       at
>>>>>> org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
>>>>>> >       at
>>>>>> org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
>>>>>> >       at
>>>>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
>>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
>>>>>> >       at
>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>> >       at
>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>>> >       at junit.framework.TestCase.runTest(TestCase.java:168)
>>>>>> >       at junit.framework.TestCase.runBare(TestCase.java:134)
>>>>>> >       at junit.framework.TestResult$1.protect(TestResult.java:110)
>>>>>> >       at
>>>>>> junit.framework.TestResult.runProtected(TestResult.java:128)
>>>>>> >       at junit.framework.TestResult.run(TestResult.java:113)
>>>>>> >       at junit.framework.TestCase.run(TestCase.java:124)
>>>>>> >       at junit.framework.TestSuite.runTest(TestSuite.java:232)
>>>>>> >       at junit.framework.TestSuite.run(TestSuite.java:227)
>>>>>> >       at
>>>>>> org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
>>>>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
>>>>>> >       at
>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>> >       at
>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
>>>>>> >       at
>>>>>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
>>>>>> > Caused by: org.apache.derby.client.am.SqlException: DELETE on
table
>>>>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>>>>> 'SQL130711163228212' for key (testWFInstance).  The statement has
been
>>>>>> rolled back.
>>>>>> >       at
>>>>>> org.apache.derby.client.am.Statement.completeExecute(Unknown Source)
>>>>>> >       at
>>>>>> org.apache.derby.client.net.NetStatementReply.parseEXCSQLSTTreply(Unknown
>>>>>> Source)
>>>>>> >       at
>>>>>> org.apache.derby.client.net.NetStatementReply.readExecute(Unknown
Source)
>>>>>> >       at
>>>>>> org.apache.derby.client.net.StatementReply.readExecute(Unknown Source)
>>>>>> >       at
>>>>>> org.apache.derby.client.net.NetPreparedStatement.readExecute_(Unknown
>>>>>> Source)
>>>>>> >       at
>>>>>> org.apache.derby.client.am.PreparedStatement.readExecute(Unknown
Source)
>>>>>> >       at
>>>>>> org.apache.derby.client.am.PreparedStatement.flowExecute(Unknown
Source)
>>>>>> >       at
>>>>>> org.apache.derby.client.am.PreparedStatement.executeUpdateX(Unknown
Source)
>>>>>> >       ... 43 more
>>>>>>
>>>>>> --
>>>>>> This message is automatically generated by JIRA.
>>>>>> If you think it was sent incorrectly, please contact your JIRA
>>>>>> administrators
>>>>>> For more information on JIRA, see:
>>>>>> http://www.atlassian.com/software/jira
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Best Regards,
>>>>> Shameera Rathnayaka.
>>>>>
>>>>> email: shameera AT apache.org , shameerainfo AT gmail.com
>>>>> Blog : http://shameerarathnayaka.blogspot.com/
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> Best Regards,
>>> Shameera Rathnayaka.
>>>
>>> email: shameera AT apache.org , shameerainfo AT gmail.com
>>> Blog : http://shameerarathnayaka.blogspot.com/
>>>
>>
>>
>
>
> --
> Best Regards,
> Shameera Rathnayaka.
>
> email: shameera AT apache.org , shameerainfo AT gmail.com
> Blog : http://shameerarathnayaka.blogspot.com/
>

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