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From Suresh Marru <sma...@apache.org>
Subject Re: Exception in jpa-registry when building in ubuntu with java 64 bit
Date Thu, 11 Jul 2013 20:56:39 GMT
If the OS and hardware are 64 bit compatible, I think it makes sense to choose 64 bit right?
On mac I always have to go with 64 bit to bump maven and eclipse to go beyond 4G memory.

Suresh
On Jul 11, 2013, at 4:49 PM, Amila Jayasekara <thejaka.amila@gmail.com> wrote:

> Yeah, lets move to Java 7.
> 64 bit or 32 bit ? Do we have a preference ?
> 
> Thanks
> Amila
> 
> 
> On Thu, Jul 11, 2013 at 4:43 PM, Suresh Marru <smarru@apache.org> wrote:
> 
>> Just curious, why not Java 7?
>> 
>> Suresh
>> 
>> On Jul 11, 2013, at 4:39 PM, Amila Jayasekara <thejaka.amila@gmail.com>
>> wrote:
>> 
>>> Hi All,
>>> 
>>> In trunk I am getting following exception when build
>> airavata-jpa-registry.
>>> I am building this in following environment;
>>> 
>>> [~/Downloads/x]>uname -a
>>> Linux sgg-build 3.5.0-36-generic #57-Ubuntu SMP Wed Jun 19 15:10:49 UTC
>>> 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> 
>>> [~/Downloads/x]>java -version
>>> java version "1.6.0_45"
>>> Java(TM) SE Runtime Environment (build 1.6.0_45-b06)
>>> Java HotSpot(TM) 64-Bit Server VM (build 20.45-b01, mixed mode)
>>> 
>>> Could this be due to java 64 bit ?
>>> 
>>> Thanks
>>> Amila
>>> 
>>> 
>>> [1]
>>> 
>> -------------------------------------------------------------------------------
>>> Test set:
>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest
>>> 
>> -------------------------------------------------------------------------------
>>> Tests run: 4, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.779 sec
>>> <<< FAILURE!
>>> 
>> testRemove(org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest)
>>> Time elapsed: 0.225 sec  <<< ERROR!
>>> <openjpa-2.2.0-r422266:1244990 fatal general error>
>>> org.apache.openjpa.persistence.PersistenceException: DELETE on table
>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>> rolled back. {prepstmnt 1269198549
>>> DELETE FROM Experiment_Data
>>>   WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID FROM
>>>       Experiment_Data t0 WHERE (t0.experiment_ID = ?))
>>> [params=(String) testExpID]} [code=-1, state=23503]
>>> FailedObject: DELETE FROM Experiment_Data WHERE experiment_ID IN (SELECT
>>> DISTINCT t0.experiment_ID FROM Experiment_Data t0 WHERE
>> (t0.experiment_ID =
>>> ?)) [java.lang.String]
>>> at
>> org.apache.openjpa.jdbc.sql.DBDictionary.narrow(DBDictionary.java:4912)
>>> at
>>> 
>> org.apache.openjpa.jdbc.sql.DBDictionary.newStoreException(DBDictionary.java:4878)
>>> at
>>> 
>> org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:136)
>>> at
>> org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:78)
>>> at
>>> 
>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:579)
>>> at
>>> 
>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
>>> at
>>> 
>> org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
>>> at org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
>>> at org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
>>> at org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
>>> at
>>> 
>> org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
>>> at
>>> 
>> org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
>>> at
>>> 
>> org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
>>> at
>>> 
>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>> at
>>> 
>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>> at
>>> 
>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>> at java.lang.reflect.Method.invoke(Method.java:597)
>>> at junit.framework.TestCase.runTest(TestCase.java:168)
>>> at junit.framework.TestCase.runBare(TestCase.java:134)
>>> at junit.framework.TestResult$1.protect(TestResult.java:110)
>>> at junit.framework.TestResult.runProtected(TestResult.java:128)
>>> at junit.framework.TestResult.run(TestResult.java:113)
>>> at junit.framework.TestCase.run(TestCase.java:124)
>>> at junit.framework.TestSuite.runTest(TestSuite.java:232)
>>> at junit.framework.TestSuite.run(TestSuite.java:227)
>>> at
>>> 
>> org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
>>> at
>>> 
>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
>>> at
>>> 
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
>>> at
>>> 
>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>> at
>>> 
>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>> at
>>> 
>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>> at java.lang.reflect.Method.invoke(Method.java:597)
>>> at
>>> 
>> org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
>>> at
>>> 
>> org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
>>> at
>>> 
>> org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
>>> at
>>> 
>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
>>> at
>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
>>> Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: DELETE on
>>> table 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>> rolled back. {prepstmnt 1269198549
>>> DELETE FROM Experiment_Data
>>>   WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID FROM
>>>       Experiment_Data t0 WHERE (t0.experiment_ID = ?))
>>> [params=(String) testExpID]} [code=-1, state=23503]
>>> at
>>> 
>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:247)
>>> at
>>> 
>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:223)
>>> at
>>> 
>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.access$1000(LoggingConnectionDecorator.java:72)
>>> at
>>> 
>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1162)
>>> at
>>> 
>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>> at
>>> 
>> org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
>>> at
>>> 
>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
>>> at
>>> 
>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
>>> ... 34 more
>>> NestedThrowables:
>>> java.sql.SQLIntegrityConstraintViolationException: DELETE on table
>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>> rolled back.
>>> at
>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>> Source)
>>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>> Source)
>>> at org.apache.derby.client.am.PreparedStatement.executeUpdate(Unknown
>>> Source)
>>> at
>>> 
>> org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
>>> at
>>> 
>> org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
>>> at
>>> 
>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>> at
>>> 
>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1160)
>>> at
>>> 
>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>> at
>>> 
>> org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
>>> at
>>> 
>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
>>> at
>>> 
>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
>>> at
>>> 
>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
>>> at
>>> 
>> org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
>>> at org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
>>> at org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
>>> at org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
>>> at
>>> 
>> org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
>>> at
>>> 
>> org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
>>> at
>>> 
>> org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
>>> at
>>> 
>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>> at
>>> 
>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>> at
>>> 
>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>> at java.lang.reflect.Method.invoke(Method.java:597)
>>> at junit.framework.TestCase.runTest(TestCase.java:168)
>>> at junit.framework.TestCase.runBare(TestCase.java:134)
>>> at junit.framework.TestResult$1.protect(TestResult.java:110)
>>> at junit.framework.TestResult.runProtected(TestResult.java:128)
>>> at junit.framework.TestResult.run(TestResult.java:113)
>>> at junit.framework.TestCase.run(TestCase.java:124)
>>> at junit.framework.TestSuite.runTest(TestSuite.java:232)
>>> at junit.framework.TestSuite.run(TestSuite.java:227)
>>> at
>>> 
>> org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
>>> at
>>> 
>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
>>> at
>>> 
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
>>> at
>>> 
>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>> at
>>> 
>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>> at
>>> 
>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>> at java.lang.reflect.Method.invoke(Method.java:597)
>>> at
>>> 
>> org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
>>> at
>>> 
>> org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
>>> at
>>> 
>> org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
>>> at
>>> 
>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
>>> at
>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
>>> Caused by: org.apache.derby.client.am.SqlException: DELETE on table
>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>> rolled back.
>>> at org.apache.derby.client.am.Statement.completeExecute(Unknown Source)
>>> at
>>> org.apache.derby.client.net.NetStatementReply.parseEXCSQLSTTreply(Unknown
>>> Source)
>>> at org.apache.derby.client.net.NetStatementReply.readExecute(Unknown
>> Source)
>>> at org.apache.derby.client.net.StatementReply.readExecute(Unknown Source)
>>> at org.apache.derby.client.net.NetPreparedStatement.readExecute_(Unknown
>>> Source)
>>> at org.apache.derby.client.am.PreparedStatement.readExecute(Unknown
>> Source)
>>> at org.apache.derby.client.am.PreparedStatement.flowExecute(Unknown
>> Source)
>>> at org.apache.derby.client.am.PreparedStatement.executeUpdateX(Unknown
>>> Source)
>>> ... 43 more
>> 
>> 


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