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From Amila Jayasekara <thejaka.am...@gmail.com>
Subject Exception in jpa-registry when building in ubuntu with java 64 bit
Date Thu, 11 Jul 2013 20:39:29 GMT
Hi All,

In trunk I am getting following exception when build airavata-jpa-registry.
I am building this in following environment;

[~/Downloads/x]>uname -a
Linux sgg-build 3.5.0-36-generic #57-Ubuntu SMP Wed Jun 19 15:10:49 UTC
2013 x86_64 x86_64 x86_64 GNU/Linux

[~/Downloads/x]>java -version
java version "1.6.0_45"
Java(TM) SE Runtime Environment (build 1.6.0_45-b06)
Java HotSpot(TM) 64-Bit Server VM (build 20.45-b01, mixed mode)

Could this be due to java 64 bit ?

Thanks
Amila


[1]
-------------------------------------------------------------------------------
Test set:
org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest
-------------------------------------------------------------------------------
Tests run: 4, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.779 sec
<<< FAILURE!
testRemove(org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest)
 Time elapsed: 0.225 sec  <<< ERROR!
<openjpa-2.2.0-r422266:1244990 fatal general error>
org.apache.openjpa.persistence.PersistenceException: DELETE on table
'WORKFLOW_DATA' caused a violation of foreign key constraint
'SQL130711163228212' for key (testWFInstance).  The statement has been
rolled back. {prepstmnt 1269198549
DELETE FROM Experiment_Data
    WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID FROM
        Experiment_Data t0 WHERE (t0.experiment_ID = ?))
[params=(String) testExpID]} [code=-1, state=23503]
FailedObject: DELETE FROM Experiment_Data WHERE experiment_ID IN (SELECT
DISTINCT t0.experiment_ID FROM Experiment_Data t0 WHERE (t0.experiment_ID =
?)) [java.lang.String]
at org.apache.openjpa.jdbc.sql.DBDictionary.narrow(DBDictionary.java:4912)
at
org.apache.openjpa.jdbc.sql.DBDictionary.newStoreException(DBDictionary.java:4878)
at
org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:136)
at org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:78)
at
org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:579)
at
org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
at
org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
at org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
at org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
at org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
at
org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
at
org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
at
org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
at
org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at junit.framework.TestCase.runTest(TestCase.java:168)
at junit.framework.TestCase.runBare(TestCase.java:134)
at junit.framework.TestResult$1.protect(TestResult.java:110)
at junit.framework.TestResult.runProtected(TestResult.java:128)
at junit.framework.TestResult.run(TestResult.java:113)
at junit.framework.TestCase.run(TestCase.java:124)
at junit.framework.TestSuite.runTest(TestSuite.java:232)
at junit.framework.TestSuite.run(TestSuite.java:227)
at
org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
at
org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
at
org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
at
org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
at
org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
at
org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
at
org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: DELETE on
table 'WORKFLOW_DATA' caused a violation of foreign key constraint
'SQL130711163228212' for key (testWFInstance).  The statement has been
rolled back. {prepstmnt 1269198549
DELETE FROM Experiment_Data
    WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID FROM
        Experiment_Data t0 WHERE (t0.experiment_ID = ?))
[params=(String) testExpID]} [code=-1, state=23503]
at
org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:247)
at
org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:223)
at
org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.access$1000(LoggingConnectionDecorator.java:72)
at
org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1162)
at
org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
at
org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
at
org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
at
org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
... 34 more
NestedThrowables:
java.sql.SQLIntegrityConstraintViolationException: DELETE on table
'WORKFLOW_DATA' caused a violation of foreign key constraint
'SQL130711163228212' for key (testWFInstance).  The statement has been
rolled back.
at org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
Source)
at org.apache.derby.client.am.SqlException.getSQLException(Unknown Source)
at org.apache.derby.client.am.PreparedStatement.executeUpdate(Unknown
Source)
at
org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
at
org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
at
org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
at
org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1160)
at
org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
at
org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
at
org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
at
org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
at
org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
at
org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
at org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
at org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
at org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
at
org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
at
org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
at
org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
at
org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at junit.framework.TestCase.runTest(TestCase.java:168)
at junit.framework.TestCase.runBare(TestCase.java:134)
at junit.framework.TestResult$1.protect(TestResult.java:110)
at junit.framework.TestResult.runProtected(TestResult.java:128)
at junit.framework.TestResult.run(TestResult.java:113)
at junit.framework.TestCase.run(TestCase.java:124)
at junit.framework.TestSuite.runTest(TestSuite.java:232)
at junit.framework.TestSuite.run(TestSuite.java:227)
at
org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
at
org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
at
org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
at
org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
at
org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
at
org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
at
org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
Caused by: org.apache.derby.client.am.SqlException: DELETE on table
'WORKFLOW_DATA' caused a violation of foreign key constraint
'SQL130711163228212' for key (testWFInstance).  The statement has been
rolled back.
at org.apache.derby.client.am.Statement.completeExecute(Unknown Source)
at
org.apache.derby.client.net.NetStatementReply.parseEXCSQLSTTreply(Unknown
Source)
at org.apache.derby.client.net.NetStatementReply.readExecute(Unknown Source)
at org.apache.derby.client.net.StatementReply.readExecute(Unknown Source)
at org.apache.derby.client.net.NetPreparedStatement.readExecute_(Unknown
Source)
at org.apache.derby.client.am.PreparedStatement.readExecute(Unknown Source)
at org.apache.derby.client.am.PreparedStatement.flowExecute(Unknown Source)
at org.apache.derby.client.am.PreparedStatement.executeUpdateX(Unknown
Source)
... 43 more

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