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From Shameera Rathnayaka <shameerai...@gmail.com>
Subject Re: [jira] [Updated] (AIRAVATA-886) Exception in jpa-registry when building in ubuntu with java 64 bit
Date Sat, 13 Jul 2013 18:59:01 GMT
On Sun, Jul 14, 2013 at 12:02 AM, Amila Jayasekara
<thejaka.amila@gmail.com>wrote:

> Guess we found the cause for the issue. Soon we will commit a fix.
>

Great, Thanks Amila.

Cheers,
Shameera.


>
>
> Thanks
> AJ
>
>
> On Sat, Jul 13, 2013 at 2:00 PM, Shameera Rathnayaka <
> shameerainfo@gmail.com> wrote:
>
>> Hi devs,
>>
>> This test failure is still there, any workaround for this?
>>
>> Thanks,
>> Shameera.
>>
>>
>> On Fri, Jul 12, 2013 at 8:13 PM, Amila Jayasekara (JIRA) <jira@apache.org
>> > wrote:
>>
>>>
>>>      [
>>> https://issues.apache.org/jira/browse/AIRAVATA-886?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel]
>>>
>>> Amila Jayasekara updated AIRAVATA-886:
>>> --------------------------------------
>>>
>>>     Attachment:
>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.txt
>>>
>>> > Exception in jpa-registry when building in ubuntu with java 64 bit
>>> > ------------------------------------------------------------------
>>> >
>>> >                 Key: AIRAVATA-886
>>> >                 URL:
>>> https://issues.apache.org/jira/browse/AIRAVATA-886
>>> >             Project: Airavata
>>> >          Issue Type: Bug
>>> >          Components: Registry API
>>> >    Affects Versions: 0.8
>>> >         Environment: Linux sgg-build 3.5.0-36-generic #57-Ubuntu SMP
>>> Wed Jun 19 15:10:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> > java version "1.7.0_25"
>>> > Java(TM) SE Runtime Environment (build 1.7.0_25-b15)
>>> > Java HotSpot(TM) 64-Bit Server VM (build 23.25-b01, mixed mode)
>>> >            Reporter: Amila Jayasekara
>>> >             Fix For: 0.9
>>> >
>>> >         Attachments:
>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.txt
>>> >
>>> >
>>> > I am getting following exception when build airavata-jpa-registry in
>>> above environment;
>>> > Surefire reports are also attached.
>>> >
>>> -------------------------------------------------------------------------------
>>> > Test set:
>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest
>>> >
>>> -------------------------------------------------------------------------------
>>> > Tests run: 4, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.779
>>> sec <<< FAILURE!
>>> >
>>> testRemove(org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest)
>>>  Time elapsed: 0.225 sec  <<< ERROR!
>>> > <openjpa-2.2.0-r422266:1244990 fatal general error>
>>> org.apache.openjpa.persistence.PersistenceException: DELETE on table
>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>> rolled back. {prepstmnt 1269198549
>>> > DELETE FROM Experiment_Data
>>> >     WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID FROM
>>> >         Experiment_Data t0 WHERE (t0.experiment_ID = ?))
>>> > [params=(String) testExpID]} [code=-1, state=23503]
>>> > FailedObject: DELETE FROM Experiment_Data WHERE experiment_ID IN
>>> (SELECT DISTINCT t0.experiment_ID FROM Experiment_Data t0 WHERE
>>> (t0.experiment_ID = ?)) [java.lang.String]
>>> >       at
>>> org.apache.openjpa.jdbc.sql.DBDictionary.narrow(DBDictionary.java:4912)
>>> >       at
>>> org.apache.openjpa.jdbc.sql.DBDictionary.newStoreException(DBDictionary.java:4878)
>>> >       at
>>> org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:136)
>>> >       at
>>> org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:78)
>>> >       at
>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:579)
>>> >       at
>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
>>> >       at
>>> org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
>>> >       at
>>> org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
>>> >       at
>>> org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
>>> >       at
>>> org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
>>> >       at
>>> org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
>>> >       at
>>> org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
>>> >       at
>>> org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
>>> >       at
>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>> >       at
>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>> >       at
>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>> >       at junit.framework.TestCase.runTest(TestCase.java:168)
>>> >       at junit.framework.TestCase.runBare(TestCase.java:134)
>>> >       at junit.framework.TestResult$1.protect(TestResult.java:110)
>>> >       at junit.framework.TestResult.runProtected(TestResult.java:128)
>>> >       at junit.framework.TestResult.run(TestResult.java:113)
>>> >       at junit.framework.TestCase.run(TestCase.java:124)
>>> >       at junit.framework.TestSuite.runTest(TestSuite.java:232)
>>> >       at junit.framework.TestSuite.run(TestSuite.java:227)
>>> >       at
>>> org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
>>> >       at
>>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
>>> >       at
>>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
>>> >       at
>>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>> >       at
>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>> >       at
>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>> >       at
>>> org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
>>> >       at
>>> org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
>>> >       at
>>> org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
>>> >       at
>>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
>>> >       at
>>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
>>> > Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: DELETE
>>> on table 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>> rolled back. {prepstmnt 1269198549
>>> > DELETE FROM Experiment_Data
>>> >     WHERE experiment_ID IN (SELECT DISTINCT t0.experiment_ID FROM
>>> >         Experiment_Data t0 WHERE (t0.experiment_ID = ?))
>>> > [params=(String) testExpID]} [code=-1, state=23503]
>>> >       at
>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:247)
>>> >       at
>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.wrap(LoggingConnectionDecorator.java:223)
>>> >       at
>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator.access$1000(LoggingConnectionDecorator.java:72)
>>> >       at
>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1162)
>>> >       at
>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>> >       at
>>> org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
>>> >       at
>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
>>> >       at
>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
>>> >       ... 34 more
>>> > NestedThrowables:
>>> > java.sql.SQLIntegrityConstraintViolationException: DELETE on table
>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>> rolled back.
>>> >       at
>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>> Source)
>>> >       at
>>> org.apache.derby.client.am.SqlException.getSQLException(Unknown Source)
>>> >       at
>>> org.apache.derby.client.am.PreparedStatement.executeUpdate(Unknown Source)
>>> >       at
>>> org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
>>> >       at
>>> org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
>>> >       at
>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>> >       at
>>> org.apache.openjpa.lib.jdbc.LoggingConnectionDecorator$LoggingConnection$LoggingPreparedStatement.executeUpdate(LoggingConnectionDecorator.java:1160)
>>> >       at
>>> org.apache.openjpa.lib.jdbc.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:272)
>>> >       at
>>> org.apache.openjpa.jdbc.kernel.JDBCStoreManager$CancelPreparedStatement.executeUpdate(JDBCStoreManager.java:1741)
>>> >       at
>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeUpdate(JDBCStoreQuery.java:746)
>>> >       at
>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeBulkOperation(JDBCStoreQuery.java:577)
>>> >       at
>>> org.apache.openjpa.jdbc.kernel.JDBCStoreQuery.executeDelete(JDBCStoreQuery.java:491)
>>> >       at
>>> org.apache.openjpa.kernel.ExpressionStoreQuery$DataStoreExecutor.executeDelete(ExpressionStoreQuery.java:789)
>>> >       at
>>> org.apache.openjpa.kernel.QueryImpl.delete(QueryImpl.java:1025)
>>> >       at
>>> org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:865)
>>> >       at
>>> org.apache.openjpa.kernel.QueryImpl.deleteAll(QueryImpl.java:892)
>>> >       at
>>> org.apache.openjpa.kernel.DelegatingQuery.deleteAll(DelegatingQuery.java:574)
>>> >       at
>>> org.apache.openjpa.persistence.QueryImpl.executeUpdate(QueryImpl.java:374)
>>> >       at
>>> org.apache.airavata.persistance.registry.jpa.resources.ExperimentResource.remove(ExperimentResource.java:115)
>>> >       at
>>> org.apache.airavata.persistance.registry.jpa.ExperimentResourceTest.testRemove(ExperimentResourceTest.java:73)
>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>> >       at
>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>> >       at
>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>> >       at junit.framework.TestCase.runTest(TestCase.java:168)
>>> >       at junit.framework.TestCase.runBare(TestCase.java:134)
>>> >       at junit.framework.TestResult$1.protect(TestResult.java:110)
>>> >       at junit.framework.TestResult.runProtected(TestResult.java:128)
>>> >       at junit.framework.TestResult.run(TestResult.java:113)
>>> >       at junit.framework.TestCase.run(TestCase.java:124)
>>> >       at junit.framework.TestSuite.runTest(TestSuite.java:232)
>>> >       at junit.framework.TestSuite.run(TestSuite.java:227)
>>> >       at
>>> org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:83)
>>> >       at
>>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
>>> >       at
>>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
>>> >       at
>>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
>>> >       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>> >       at
>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>> >       at
>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>> >       at java.lang.reflect.Method.invoke(Method.java:597)
>>> >       at
>>> org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
>>> >       at
>>> org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
>>> >       at
>>> org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
>>> >       at
>>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
>>> >       at
>>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)
>>> > Caused by: org.apache.derby.client.am.SqlException: DELETE on table
>>> 'WORKFLOW_DATA' caused a violation of foreign key constraint
>>> 'SQL130711163228212' for key (testWFInstance).  The statement has been
>>> rolled back.
>>> >       at org.apache.derby.client.am.Statement.completeExecute(Unknown
>>> Source)
>>> >       at
>>> org.apache.derby.client.net.NetStatementReply.parseEXCSQLSTTreply(Unknown
>>> Source)
>>> >       at
>>> org.apache.derby.client.net.NetStatementReply.readExecute(Unknown Source)
>>> >       at
>>> org.apache.derby.client.net.StatementReply.readExecute(Unknown Source)
>>> >       at
>>> org.apache.derby.client.net.NetPreparedStatement.readExecute_(Unknown
>>> Source)
>>> >       at
>>> org.apache.derby.client.am.PreparedStatement.readExecute(Unknown Source)
>>> >       at
>>> org.apache.derby.client.am.PreparedStatement.flowExecute(Unknown Source)
>>> >       at
>>> org.apache.derby.client.am.PreparedStatement.executeUpdateX(Unknown Source)
>>> >       ... 43 more
>>>
>>> --
>>> This message is automatically generated by JIRA.
>>> If you think it was sent incorrectly, please contact your JIRA
>>> administrators
>>> For more information on JIRA, see:
>>> http://www.atlassian.com/software/jira
>>>
>>
>>
>>
>> --
>> Best Regards,
>> Shameera Rathnayaka.
>>
>> email: shameera AT apache.org , shameerainfo AT gmail.com
>> Blog : http://shameerarathnayaka.blogspot.com/
>>
>
>


-- 
Best Regards,
Shameera Rathnayaka.

email: shameera AT apache.org , shameerainfo AT gmail.com
Blog : http://shameerarathnayaka.blogspot.com/

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