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From Raminder Singh <raminderjsi...@gmail.com>
Subject Re: Submit task to Lonestar using my Xsede account instead of using ogce
Date Wed, 06 Feb 2013 15:23:05 GMT
Hi Pedro,

Can you check space in home directory of your account on Lonestar? I have seen such problem
if you cross disk quota.  Gram does not give any error and job does not go into queue. If
quota is fine then we need to debug more. 

Thanks
Raminder

On Feb 5, 2013, at 7:49 PM, Pedro da Silveira wrote:

> Hi Dev,
> 
> I am trying to submit a workflow using my Xsede account using Xbaya. It has
> worked successfully using "ogce" account.
> I changed the file "airavata-server.properties" to use my Xsede portal
> account.
> 
> myproxy.user=pedrorcs
> myproxy.pass=******
> 
> I also changed the Application Service to use a different settings like my
> user $SCRATCH directory.
> 
> Executable path:
> /scratch/00091/tg458470/executePwscf.sh
> 
> Scratch Working directory:
> /scratch/00091/tg458470/Phonon
> 
> I set the workflow to run then I setup correctly the local path to input
> files on my desktop.
> All input files got transferred correctly, but the job were never not
> submitted to PBS.
> Can someone please clarify if I am doing something wrong?
> 
> This is the log on Airavata-Server:
> 
> =================================================================================================================
> [INFO] Experiment launched
> :SimplePhonon_01a4d374-486f-4948-937f-a9de4b2b45eb
> [INFO] -----DATA-----
> [INFO] Start scheduling
> [INFO] -----END DATA-----
> [INFO] Searching registry for some deployed application hosts
> [INFO] Found service on: lonestar4.tacc.teragrid.org
> [INFO] Found service on: lonestar4.tacc.teragrid.org
> [INFO] -----DATA-----
> [INFO] Finish scheduling
> [INFO] -----END DATA-----
> null
> [INFO] Proxy file renewed to
> /tmp/x509up_upedrorcsed4c4290-90e6-40a6-bfe7-3c5239da1b7c for the user
> pedrorcs with 3600 lifetime.
> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> =//scratch/00091/tg458470/Phonon
> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData
> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData
> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> [INFO] The remote file is
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
> [INFO] Uploading file
> [INFO] Upload file
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
> is done
> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> [INFO] The remote file is
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
> [INFO] Uploading file
> [INFO] Upload file
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
> is done
> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> [INFO] The remote file is
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
> [INFO] Uploading file
> [INFO] Upload file
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
> is done
> [INFO] -----DATA-----
> [INFO] Start execution
> [INFO] -----END DATA-----
> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> [INFO] -----DATA-----
> [INFO] Finished launching job, Host = lonestar4.tacc.teragrid.org RSL = &(
> queue = "development" )( stdout =
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stdout"
> )( count = "12" )( executable = "/scratch/00091/tg458470/executePwscf.sh"
> )( stderr =
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stderr"
> )( maxwalltime = "20" )( hostCount = "1" )( minmemory = "1024" )( project =
> "TG-TRA120030" )( jobtype = "mpi" )( environment = ( "inputData"
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData"
> ) ( "outputData"
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData"
> ) )( proxy_timeout = "1" )( arguments =
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input"
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3"
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb"
> )( directory =
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d"
> )( maxmemory = "2048" ) working directory =
> /scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
> temp directory = /scratch/00091/tg458470/Phonon Globus GateKeeper Endpoint
> = gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge
> [INFO] -----END DATA-----
> =================================================================================================================
> 
> 
> Thank you so much,
> 
> 
> Pedro da Silveira


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