airavata-dev mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From Pedro da Silveira <pedro...@gmail.com>
Subject Re: Two execution in one script.
Date Tue, 29 Jan 2013 21:08:00 GMT
Hi Lahiru,

Yes. I tested the second executable "ph.x". It runs just fine. In fact, I
ran this executable separately and it took around 15 hour to finish. I also
tried small examples that took only 3 minutes.

Thank you,



On Tue, Jan 29, 2013 at 3:04 PM, Lahiru Gunathilake <glahiru@gmail.com>wrote:

> Hi Pedro,
>
> Can you please try to run your second executable only (ph.x) and see
> whether it works fine with airavata ?
>
> Lahiru
>
> On Tue, Jan 29, 2013 at 3:48 PM, Pedro da Silveira <pedrorcs@gmail.com
> >wrote:
>
> > Hi Dev,
> >
> > I need a few tips here on how to run my workflow.
> >
> > I prepared a simple script to run my workflow, which has 4 inputs and
> runs
> > on Lonestar.
> > In my script, I call two Fortran executable. It first runs "pw.x", later
> > runs "ph.x" in this order.
> > Unfortunately, as soon as the "pw.x" finishes, the ph.x does not start to
> > run. I checked the output and nothing is written there. By looking on
> Xbaya
> > dashboard it just says that my job is still running. My wall time is of
> 24h
> > because the ph.x will require  time to finish.
> > I am using the user name ogce on Lonestar.
> >
> > Is this echo at end of my script correct?
> > Should I point to the path where my output is located?
> > Should I create a String Output variable on my AppService to receive this
> > information back on the Xbaya?
> >
> > Script file name: executePhonon.sh
> >
> > =================================================
> > #ibrun $SCRATCH/pw.x -inp ./Pwscf_Input > ./Pwscf_Output;
> > echo $*
> > export APP_PATH=/scratch/01437/ogce/Vlab/Phonon/
> >
> > cd $APP_PATH
> > cp $1 .
> > cp $2 .
> > cp $3 .
> > cp $4 .
> > ####ibrun
> > /scratch/01437/ogce/Vlab/pw.x < Pwscf_Input >> $APP_PATH/Pwscf_Output;
> >
> > /scratch/01437/ogce/Vlab/ph.x < Phonon_Input >> $APP_PATH/Phonon_Output
;
> >
> > echo Pwscf_Output=$APP_PATH/Pwscf_Output
> > echo Phonon_Output=$APP_PATH/Phonon_Output
> > ===================================================
> >
> > Any advice on how to have this script running on Lonestart is welcome.
> >
> > Thank you,
> >
> > Pedro da Silveira
> >
>
>
>
> --
> System Analyst Programmer
> PTI Lab
> Indiana University
>

Mime
  • Unnamed multipart/alternative (inline, None, 0 bytes)
View raw message