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From dimuthu...@apache.org
Subject [airavata] 01/02: Merge branch 'staging'
Date Tue, 22 Oct 2019 18:30:15 GMT
This is an automated email from the ASF dual-hosted git repository.

dimuthuupe pushed a commit to branch master
in repository https://gitbox.apache.org/repos/asf/airavata.git

commit bb15f3b080fd8a2670d1b71ffd30f33281a0d012
Merge: 007e251 fa46337
Author: Dimuthu Wannipurage <dimuthu.upeksha2@gmail.com>
AuthorDate: Tue Oct 1 16:31:03 2019 -0400

    Merge branch 'staging'
    
    # Conflicts:
    #	dev-tools/ansible/roles/helix_setup/templates/participant/airavata-server.properties.j2
    #	modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/api/StorageResourceAdaptor.java
    #	modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/streaming/VirtualInputStream.java
    #	modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/streaming/VirtualOutputStream.java
    #	modules/distribution/src/main/assembly/participant-bin-assembly.xml

 .gitignore                                         |      7 +-
 airavata-api/airavata-api-server/pom.xml           |      8 +-
 .../airavata/api/server/AiravataDerbyServer.java   |    165 -
 .../api/server/handler/AiravataServerHandler.java  |   1900 +-
 airavata-api/airavata-api-stubs/pom.xml            |      4 +-
 .../java/org/apache/airavata/api/Airavata.java     | 119489 ++++++++++++------
 airavata-api/airavata-base-api/pom.xml             |      4 +-
 .../airavata-client-sdks/airavata-cpp-sdk/pom.xml  |      2 +-
 .../src/main/resources/lib/airavata/Airavata.cpp   |  47974 ++++---
 .../src/main/resources/lib/airavata/Airavata.h     |  17213 ++-
 .../lib/airavata/Airavata_server.skeleton.cpp      |    488 +-
 .../src/main/resources/lib/airavata/BaseAPI.cpp    |    415 +
 .../src/main/resources/lib/airavata/BaseAPI.h      |    301 +
 .../lib/airavata/BaseAPI_server.skeleton.cpp       |     61 +
 .../account_provisioning_model_constants.cpp       |     34 +
 .../account_provisioning_model_constants.h         |     41 +
 .../airavata/account_provisioning_model_types.cpp  |    377 +
 .../airavata/account_provisioning_model_types.h    |    175 +
 .../lib/airavata/airavata_api_constants.cpp        |      4 +-
 .../lib/airavata/airavata_api_constants.h          |      2 +-
 .../resources/lib/airavata/airavata_api_types.cpp  |      2 +-
 .../resources/lib/airavata/airavata_api_types.h    |      9 +-
 .../lib/airavata/airavata_commons_constants.cpp    |      2 +-
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 .../lib/airavata/airavata_commons_types.cpp        |      2 +-
 .../lib/airavata/airavata_commons_types.h          |      9 +-
 .../airavata/airavata_data_models_constants.cpp    |      2 +-
 .../lib/airavata/airavata_data_models_constants.h  |      2 +-
 .../lib/airavata/airavata_data_models_types.cpp    |      2 +-
 .../lib/airavata/airavata_data_models_types.h      |      4 +-
 .../lib/airavata/airavata_errors_constants.cpp     |      2 +-
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 .../lib/airavata/airavata_errors_types.cpp         |      2 +-
 .../resources/lib/airavata/airavata_errors_types.h |      7 +-
 .../airavata/airavata_workflow_model_constants.cpp |     34 +
 .../airavata/airavata_workflow_model_constants.h   |     41 +
 .../lib/airavata/airavata_workflow_model_types.cpp |   2185 +
 .../lib/airavata/airavata_workflow_model_types.h   |    865 +
 .../application_deployment_model_constants.cpp     |      2 +-
 .../application_deployment_model_constants.h       |      2 +-
 .../application_deployment_model_types.cpp         |      2 +-
 .../airavata/application_deployment_model_types.h  |     11 +-
 .../application_interface_model_constants.cpp      |      2 +-
 .../application_interface_model_constants.h        |      2 +-
 .../airavata/application_interface_model_types.cpp |      2 +-
 .../airavata/application_interface_model_types.h   |      5 +-
 .../airavata/application_io_models_constants.cpp   |      2 +-
 .../lib/airavata/application_io_models_constants.h |      2 +-
 .../lib/airavata/application_io_models_types.cpp   |     24 +-
 .../lib/airavata/application_io_models_types.h     |     19 +-
 .../resources/lib/airavata/base_api_constants.cpp  |     34 +
 .../resources/lib/airavata/base_api_constants.h    |     41 +
 .../main/resources/lib/airavata/base_api_types.cpp |     33 +
 .../main/resources/lib/airavata/base_api_types.h   |     42 +
 .../airavata/compute_resource_model_constants.cpp  |      2 +-
 .../airavata/compute_resource_model_constants.h    |      2 +-
 .../lib/airavata/compute_resource_model_types.cpp  |      2 +-
 .../lib/airavata/compute_resource_model_types.h    |     21 +-
 .../credential_store_data_models_constants.cpp     |      2 +-
 .../credential_store_data_models_constants.h       |      2 +-
 .../credential_store_data_models_types.cpp         |    146 +-
 .../airavata/credential_store_data_models_types.h  |     36 +-
 .../airavata/data_movement_models_constants.cpp    |      2 +-
 .../lib/airavata/data_movement_models_constants.h  |      2 +-
 .../lib/airavata/data_movement_models_types.cpp    |     71 +-
 .../lib/airavata/data_movement_models_types.h      |     44 +-
 .../lib/airavata/db_event_model_constants.cpp      |      2 +-
 .../lib/airavata/db_event_model_constants.h        |      2 +-
 .../lib/airavata/db_event_model_types.cpp          |     26 +-
 .../resources/lib/airavata/db_event_model_types.h  |     21 +-
 .../lib/airavata/experiment_model_constants.cpp    |      2 +-
 .../lib/airavata/experiment_model_constants.h      |      2 +-
 .../lib/airavata/experiment_model_types.cpp        |     56 +-
 .../lib/airavata/experiment_model_types.h          |     38 +-
 .../airavata/gateway_groups_model_constants.cpp    |     34 +
 .../lib/airavata/gateway_groups_model_constants.h  |     41 +
 .../lib/airavata/gateway_groups_model_types.cpp    |    188 +
 .../lib/airavata/gateway_groups_model_types.h      |     99 +
 .../gateway_resource_profile_model_constants.cpp   |      2 +-
 .../gateway_resource_profile_model_constants.h     |      2 +-
 .../gateway_resource_profile_model_types.cpp       |    256 +-
 .../gateway_resource_profile_model_types.h         |     38 +-
 .../lib/airavata/group_manager_model_constants.cpp |      2 +-
 .../lib/airavata/group_manager_model_constants.h   |      2 +-
 .../lib/airavata/group_manager_model_types.cpp     |     86 +-
 .../lib/airavata/group_manager_model_types.h       |     20 +-
 .../group_resource_profile_model_constants.cpp     |     34 +
 .../group_resource_profile_model_constants.h       |     41 +
 .../group_resource_profile_model_types.cpp         |   1405 +
 .../airavata/group_resource_profile_model_types.h  |    549 +
 .../resources/lib/airavata/job_model_constants.cpp |      2 +-
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 .../resources/lib/airavata/job_model_types.cpp     |      2 +-
 .../main/resources/lib/airavata/job_model_types.h  |      5 +-
 .../lib/airavata/messaging_events_constants.cpp    |      2 +-
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 .../lib/airavata/messaging_events_types.cpp        |      2 +-
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 .../lib/airavata/parallelism_model_constants.cpp   |      2 +-
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 .../lib/airavata/process_model_constants.cpp       |      2 +-
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 .../resources/lib/airavata/process_model_types.cpp |    448 +-
 .../resources/lib/airavata/process_model_types.h   |     93 +-
 .../airavata/replica_catalog_models_constants.cpp  |      2 +-
 .../airavata/replica_catalog_models_constants.h    |      2 +-
 .../lib/airavata/replica_catalog_models_types.cpp  |      2 +-
 .../lib/airavata/replica_catalog_models_types.h    |      7 +-
 .../lib/airavata/scheduling_model_constants.cpp    |      2 +-
 .../lib/airavata/scheduling_model_constants.h      |      2 +-
 .../lib/airavata/scheduling_model_types.cpp        |      2 +-
 .../lib/airavata/scheduling_model_types.h          |      5 +-
 .../lib/airavata/security_model_constants.cpp      |      2 +-
 .../lib/airavata/security_model_constants.h        |      2 +-
 .../lib/airavata/security_model_types.cpp          |      2 +-
 .../resources/lib/airavata/security_model_types.h  |      5 +-
 .../lib/airavata/status_models_constants.cpp       |      2 +-
 .../lib/airavata/status_models_constants.h         |      2 +-
 .../resources/lib/airavata/status_models_types.cpp |     98 +-
 .../resources/lib/airavata/status_models_types.h   |     64 +-
 .../airavata/storage_resource_model_constants.cpp  |      2 +-
 .../airavata/storage_resource_model_constants.h    |      2 +-
 .../lib/airavata/storage_resource_model_types.cpp  |     46 +-
 .../lib/airavata/storage_resource_model_types.h    |     25 +-
 .../lib/airavata/task_model_constants.cpp          |      2 +-
 .../resources/lib/airavata/task_model_constants.h  |      2 +-
 .../resources/lib/airavata/task_model_types.cpp    |     46 +-
 .../main/resources/lib/airavata/task_model_types.h |     33 +-
 .../airavata/tenant_profile_model_constants.cpp    |      2 +-
 .../lib/airavata/tenant_profile_model_constants.h  |      2 +-
 .../lib/airavata/tenant_profile_model_types.cpp    |      2 +-
 .../lib/airavata/tenant_profile_model_types.h      |      9 +-
 .../lib/airavata/user_profile_model_constants.cpp  |      2 +-
 .../lib/airavata/user_profile_model_constants.h    |      2 +-
 .../lib/airavata/user_profile_model_types.cpp      |    837 +-
 .../lib/airavata/user_profile_model_types.h        |    256 +-
 .../user_resource_profile_model_constants.cpp      |      2 +-
 .../user_resource_profile_model_constants.h        |      2 +-
 .../airavata/user_resource_profile_model_types.cpp |     46 +-
 .../airavata/user_resource_profile_model_types.h   |     33 +-
 .../lib/airavata/workspace_model_constants.cpp     |      2 +-
 .../lib/airavata/workspace_model_constants.h       |      2 +-
 .../lib/airavata/workspace_model_types.cpp         |      2 +-
 .../resources/lib/airavata/workspace_model_types.h |     13 +-
 .../airavata-client-sdks/airavata-php-sdk/pom.xml  |      2 +-
 .../main/resources/lib/Airavata/API/Airavata.php   |  26990 ++--
 .../API/Sharing/SharingRegistryService.php         |    961 +-
 .../resources/lib/Airavata/API/Sharing/Types.php   |      8 +
 .../Model/AppCatalog/GatewayGroups/Types.php       |    164 +
 .../AppCatalog/GroupResourceProfile/Types.php      |   1405 +
 .../lib/Airavata/Model/AppCatalog/Parser/Types.php |   1407 +
 .../Model/AppCatalog/StorageResource/Types.php     |     46 +
 .../Model/AppCatalog/UserResourceProfile/Types.php |     26 -
 .../lib/Airavata/Model/Application/Io/Types.php    |     23 +
 .../lib/Airavata/Model/Credential/Store/Types.php  |     35 +-
 .../lib/Airavata/Model/Data/Movement/Types.php     |     69 +
 .../lib/Airavata/Model/Experiment/Types.php        |     55 +
 .../resources/lib/Airavata/Model/Group/Types.php   |     65 +-
 .../lib/Airavata/Model/{job => Job}/Types.php      |      0
 .../resources/lib/Airavata/Model/Process/Types.php |    313 +-
 .../resources/lib/Airavata/Model/Sharing/Types.php |     52 +
 .../resources/lib/Airavata/Model/Status/Types.php  |     92 +
 .../main/resources/lib/Airavata/Model/Types.php    |   1111 -
 .../lib/Airavata/Model/Workflow/Types.php          |   2176 +
 .../Iam/Admin/Services/CPI/IamAdminServices.php    |   2129 +-
 .../Groupmanager/CPI/GroupManagerService.php       |   1549 +-
 .../Profile/User/CPI/UserProfileService.php        |    483 +
 .../airavata-python-sdk/pom.xml                    |      2 +-
 .../resources/lib/airavata/api/Airavata-remote     |    396 +-
 .../main/resources/lib/airavata/api/Airavata.py    |  24703 ++--
 .../main/resources/lib/airavata/api/constants.py   |      2 +-
 .../api/sharing/SharingRegistryService-remote      |     29 +-
 .../airavata/api/sharing/SharingRegistryService.py |    819 +-
 .../lib/airavata/api/sharing/constants.py          |      1 +
 .../resources/lib/airavata/api/sharing/ttypes.py   |      1 +
 .../src/main/resources/lib/airavata/api/ttypes.py  |      5 +-
 .../main/resources/lib/airavata/base/__init__.py   |      0
 .../resources/lib/airavata/base/api/BaseAPI-remote |    117 +
 .../resources/lib/airavata/base/api/BaseAPI.py     |    198 +
 .../resources/lib/airavata/base/api/__init__.py    |      1 +
 .../{api/sharing => base/api}/constants.py         |      0
 .../main/resources/lib/airavata/base/api/ttypes.py |     13 +
 .../model/appcatalog/gatewaygroups/__init__.py     |      1 +
 .../appcatalog/gatewaygroups}/constants.py         |      0
 .../model/appcatalog/gatewaygroups/ttypes.py       |    117 +
 .../appcatalog/groupresourceprofile/__init__.py    |      1 +
 .../appcatalog/groupresourceprofile}/constants.py  |      0
 .../appcatalog/groupresourceprofile/ttypes.py      |    852 +
 .../airavata/model/appcatalog/parser/__init__.py   |      1 +
 .../appcatalog/parser}/constants.py                |      0
 .../lib/airavata/model/appcatalog/parser/ttypes.py |    933 +
 .../model/appcatalog/storageresource/ttypes.py     |     26 +-
 .../model/appcatalog/userresourceprofile/ttypes.py |     17 +-
 .../lib/airavata/model/application/io/ttypes.py    |     14 +-
 .../lib/airavata/model/credential/store/ttypes.py  |     32 +-
 .../lib/airavata/model/data/movement/ttypes.py     |     38 +-
 .../lib/airavata/model/experiment/ttypes.py        |     36 +-
 .../resources/lib/airavata/model/group/ttypes.py   |     41 +-
 .../resources/lib/airavata/model/process/ttypes.py |    159 +-
 .../resources/lib/airavata/model/sharing/ttypes.py |     24 +-
 .../resources/lib/airavata/model/status/ttypes.py  |     56 +-
 .../resources/lib/airavata/model/task/ttypes.py    |     26 +-
 .../main/resources/lib/airavata/model/ttypes.py    |      1 +
 .../lib/airavata/model/workflow/ttypes.py          |   1220 +-
 .../groupmanager/cpi/GroupManagerService-remote    |     37 +-
 .../groupmanager/cpi/GroupManagerService.py        |   1238 +-
 .../service/profile/groupmanager/cpi/constants.py  |      2 +-
 .../service/profile/groupmanager/cpi/ttypes.py     |      1 +
 .../iam/admin/services/cpi/IamAdminServices-remote |     51 +-
 .../iam/admin/services/cpi/IamAdminServices.py     |   1248 +-
 .../profile/iam/admin/services/cpi/constants.py    |      2 +-
 .../profile/iam/admin/services/cpi/ttypes.py       |      1 +
 .../profile/tenant/cpi/TenantProfileService-remote |     16 +-
 .../profile/tenant/cpi/TenantProfileService.py     |    231 +-
 .../service/profile/tenant/cpi/constants.py        |      2 +-
 .../airavata/service/profile/tenant/cpi/ttypes.py  |      1 +
 .../lib/airavata/service/profile/ttypes.py         |      1 +
 .../profile/user/cpi/UserProfileService-remote     |     23 +-
 .../service/profile/user/cpi/UserProfileService.py |    411 +-
 .../airavata/service/profile/user/cpi/constants.py |      2 +-
 .../airavata/service/profile/user/cpi/ttypes.py    |      1 +
 .../java-client-samples/pom.xml                    |      2 +-
 .../client/samples/CreateLaunchExperiment.java     |      2 +-
 .../client/secure/client/SecureClient.java         |      2 +-
 airavata-api/airavata-client-sdks/pom.xml          |      2 +-
 airavata-api/airavata-data-models/pom.xml          |      2 +-
 .../appcatalog/gatewaygroups/GatewayGroups.java    |    680 +
 .../BatchQueueResourcePolicy.java                  |    993 +
 .../ComputeResourcePolicy.java                     |    744 +
 .../GroupAccountSSHProvisionerConfig.java          |    692 +
 .../GroupComputeResourcePreference.java            |   2224 +
 .../groupresourceprofile/GroupResourceProfile.java |   1395 +
 .../airavata/model/appcatalog/parser/IOType.java   |     62 +
 .../airavata/model/appcatalog/parser/Parser.java   |   1188 +
 .../model/appcatalog/parser/ParserConnector.java   |    834 +
 .../appcatalog/parser/ParserConnectorInput.java    |    789 +
 .../appcatalog/parser/ParserDagInputMapping.java   |    789 +
 .../model/appcatalog/parser/ParserInput.java       |    788 +
 .../model/appcatalog/parser/ParserOutput.java      |    788 +
 .../model/appcatalog/parser/ParsingTemplate.java   |    888 +
 .../appcatalog/parser/ParsingTemplateInput.java    |    789 +
 .../StorageResourceDescription.java                |    204 +-
 .../userresourceprofile/UserResourceProfile.java   |    115 +-
 .../model/application/io/OutputDataObjectType.java |    113 +-
 .../model/credential/store/CredentialSummary.java  |     12 +
 .../model/credential/store/SSHCredential.java      |    128 +-
 .../model/data/movement/DataMovementInterface.java |    307 +-
 .../airavata/model/experiment/ExperimentModel.java |    118 +-
 .../model/experiment/ExperimentSearchFields.java   |      8 +-
 .../experiment/UserConfigurationDataModel.java     |    113 +-
 .../apache/airavata/model/group/GroupModel.java    |    191 +-
 .../model/group/ResourcePermissionType.java        |      7 +-
 .../apache/airavata/model/group/ResourceType.java  |     11 +-
 .../airavata/model/process/ProcessModel.java       |    125 +-
 .../airavata/model/status/ExperimentStatus.java    |    113 +-
 .../apache/airavata/model/status/JobStatus.java    |    113 +-
 .../airavata/model/status/ProcessStatus.java       |    113 +-
 .../apache/airavata/model/status/TaskStatus.java   |    113 +-
 .../airavata/model/workflow/AiravataWorkflow.java  |   1587 +
 .../airavata/model/workflow/ApplicationState.java  |     83 +
 .../airavata/model/workflow/ApplicationStatus.java |    708 +
 .../airavata/model/workflow/ComponentType.java     |     62 +
 .../apache/airavata/model/workflow/DataBlock.java  |    806 +
 .../airavata/model/workflow/HandlerState.java      |     83 +
 .../airavata/model/workflow/HandlerStatus.java     |    708 +
 .../airavata/model/workflow/HandlerType.java       |     62 +
 .../airavata/model/workflow/NotificationEmail.java |    380 +
 .../model/workflow/WorkflowApplication.java        |   1714 +
 .../model/workflow/WorkflowConnection.java         |   1321 +
 .../airavata/model/workflow/WorkflowHandler.java   |   1332 +
 .../airavata/model/workflow/WorkflowState.java     |     92 +
 .../airavata/model/workflow/WorkflowStatus.java    |    708 +
 airavata-api/airavata-model-utils/pom.xml          |      2 +-
 .../airavata/model/util/ExperimentModelUtil.java   |      1 +
 airavata-api/pom.xml                               |      2 +-
 airavata-services/pom.xml                          |      4 +-
 .../iam-admin-services-core/pom.xml                |      4 +-
 .../core/impl/TenantManagementKeycloakImpl.java    |    303 +-
 .../core/interfaces/TenantManagementInterface.java |     80 +-
 .../admin/services/core/tests/SetupNewGateway.java |     31 +-
 airavata-services/profile-service/pom.xml          |      4 +-
 .../java-client-samples/pom.xml                    |      4 +-
 .../profile/client/samples/UserProfileSample.java  |      6 +-
 .../profile-service-client-sdks/pom.xml            |      4 +-
 .../profile-service-commons/pom.xml                |     30 +-
 .../commons/tenant/entities/GatewayEntity.java     |      4 +-
 .../user/entities/NSFDemographicsEntity.java       |      8 +-
 .../commons/user/entities/UserProfileEntity.java   |      6 +-
 .../service/profile/commons/utils/JPAUtils.java    |     42 +-
 .../commons/utils/ProfileServiceJDBCConfig.java    |     52 +
 .../service/profile/commons/utils/Utils.java       |     27 +-
 .../profile-service/profile-service-server/pom.xml |      4 +-
 .../handlers/GroupManagerServiceHandler.java       |    223 +-
 .../profile/handlers/IamAdminServicesHandler.java  |    138 +-
 .../handlers/TenantProfileServiceHandler.java      |     28 +-
 .../handlers/UserProfileServiceHandler.java        |     81 +-
 .../profile/server/ProfileServiceServer.java       |     15 +
 .../service/profile/utils/ProfileServiceUtils.java |     89 -
 .../profile-service/profile-service-stubs/pom.xml  |      4 +-
 .../groupmanager/cpi/GroupManagerService.java      |   6704 +-
 .../exception/GroupManagerServiceException.java    |     33 +-
 .../cpi/group_manager_cpiConstants.java            |     33 +-
 .../iam/admin/services/cpi/IamAdminServices.java   |   9639 +-
 .../cpi/exception/IamAdminServicesException.java   |     33 +-
 .../cpi/iam_admin_services_cpiConstants.java       |     33 +-
 .../profile/tenant/cpi/TenantProfileService.java   |     33 +-
 .../exception/TenantProfileServiceException.java   |     33 +-
 .../tenant/cpi/profile_tenant_cpiConstants.java    |     33 +-
 .../profile/user/cpi/UserProfileService.java       |   2001 +-
 .../cpi/exception/UserProfileServiceException.java |     33 +-
 .../user/cpi/profile_user_cpiConstants.java        |     33 +-
 .../profile-service/profile-tenant-core/pom.xml    |      5 +-
 .../profile-service/profile-user-core/pom.xml      |     14 +-
 .../core/repositories/UserProfileRepository.java   |     23 +-
 .../core/utils/UserProfileCatalogDBInitConfig.java |     42 +
 .../core/utils/UserProfileCatalogJDBCConfig.java   |     52 +
 .../main/resources/user-profile-catalog-derby.sql  |    163 +
 .../main/resources/user-profile-catalog-mysql.sql  |    163 +
 .../src/main/resources/user_profile_catalog.sql    |    114 -
 airavata-services/services-security/pom.xml        |     15 +-
 .../service/security/AiravataSecurityManager.java  |     15 +
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 .../airavata/registry/core/utils/DBConstants.java  |    184 +
 .../utils/DozerConverter/StorageDateConverter.java |     54 +
 .../core/utils/ExpCatalogDBInitConfig.java         |     84 +
 .../registry/core/utils/ExpCatalogJDBCConfig.java  |     66 +
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 .../core/utils/JPAUtil/AppCatalogJPAUtils.java     |     38 +
 .../core/utils/JPAUtil/ExpCatalogJPAUtils.java     |     37 +
 .../core/utils/JPAUtil/RepCatalogJPAUtils.java     |     39 +
 .../utils/JPAUtil/WorkflowCatalogJPAUtils.java     |     38 +
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 .../registry/core/utils/WorkflowCatalogUtils.java  |     29 +
 .../workflow/catalog/impl/WorkflowCatalogImpl.java |    250 -
 .../workflow/catalog/model/ComponentStatus.java    |     99 -
 .../registry/core/workflow/catalog/model/Edge.java |    112 -
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 .../catalog/resources/ComponentStatusResource.java |    340 -
 .../workflow/catalog/resources/EdgeResource.java   |    380 -
 .../workflow/catalog/resources/NodeResource.java   |    402 -
 .../workflow/catalog/resources/PortResource.java   |    380 -
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 .../catalog/resources/WorkflowCatalogResource.java |    109 -
 .../catalog/resources/WorkflowInputResource.java   |    496 -
 .../catalog/resources/WorkflowOutputResource.java  |    489 -
 .../catalog/resources/WorkflowResource.java        |    435 -
 .../catalog/resources/WorkflowStatusResource.java  |    369 -
 .../catalog/utils/WorkflowCatalogJPAUtils.java     |    268 -
 .../utils/WorkflowCatalogQueryGenerator.java       |     88 -
 .../catalog/utils/WorkflowCatalogResourceType.java |     31 -
 .../utils/WorkflowCatalogThriftConversion.java     |     74 -
 .../catalog/utils/WorkflowCatalogUtils.java        |     29 -
 .../META-INF/generate-sql-persistence.xml          |     30 +
 .../src/main/resources/META-INF/persistence.xml    |    200 +-
 .../resources/airavataworkflowcatalog-derby.sql    |    212 +
 .../src/main/resources/appcatalog-derby.sql        |    319 +-
 .../src/main/resources/appcatalog-mysql.sql        |    406 +-
 .../src/main/resources/dozer_mapping.xml           |     26 +
 .../src/main/resources/expcatalog-derby.sql        |    462 +-
 .../src/main/resources/expcatalog-mysql.sql        |    517 +-
 .../src/main/resources/replicacatalog-derby.sql    |     24 +-
 .../src/main/resources/replicacatalog-mysql.sql    |     22 +-
 .../src/main/resources/workflowcatalog-derby.sql   |      4 +-
 .../src/main/resources/workflowcatalog-mysql.sql   |      4 +-
 .../airavata/app/catalog/AppDeploymentTest.java    |    152 -
 .../airavata/app/catalog/AppInterfaceTest.java     |    189 -
 ...ComputeAppCatalogExperimentCatResourceTest.java |    296 -
 .../airavata/app/catalog/GatewayProfileTest.java   |    125 -
 .../app/catalog/StorageResourceAppCatalogTest.java |    150 -
 .../app/catalog/UserResourceProfileTest.java       |    187 -
 .../airavata/app/catalog/util/Initialize.java      |    318 -
 .../experiment/catalog/AbstractResourceTest.java   |     89 -
 .../catalog/ExperimentInputResourceTest.java       |     96 -
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 .../experiment/catalog/ProcessResourceTest.java    |     82 -
 .../catalog/QueueStatusResourceTest.java           |     95 -
 .../experiment/catalog/TaskResourceTest.java       |     96 -
 .../catalog/UserConfigurationDataTest.java         |     80 -
 .../experiment/catalog/UserResourceTest.java       |     75 -
 .../experiment/catalog/util/Initialize.java        |    328 -
 .../ApplicationDeploymentRepositoryTest.java       |    349 +
 .../ApplicationInterfaceRepositoryTest.java        |    607 +
 .../appcatalog/ComputeResourceRepositoryTest.java  |    635 +
 .../appcatalog/GatewayGroupsRepositoryTest.java    |     93 +
 .../appcatalog/GatewayProfileRepositoryTest.java   |    144 +
 .../GroupResourceProfileRepositoryTest.java        |    272 +
 .../JobSubmissionInterfaceRepositoryTest.java      |     88 +
 .../appcatalog/StorageResourceRepositoryTest.java  |    141 +
 .../UserResourceProfileRepositoryTest.java         |     83 +
 .../core/repositories/common/TestBase.java         |     80 +
 .../expcatalog/ExperimentErrorRepositoryTest.java  |     99 +
 .../expcatalog/ExperimentInputRepositoryTest.java  |    105 +
 .../expcatalog/ExperimentOutputRepositoryTest.java |    105 +
 .../expcatalog/ExperimentRepositoryTest.java       |    234 +
 .../expcatalog/ExperimentStatusRepositoryTest.java |    104 +
 .../ExperimentSummaryRepositoryTest.java           |    223 +
 .../expcatalog/GatewayRepositoryTest.java          |     77 +
 .../repositories/expcatalog/JobRepositoryTest.java |    142 +
 .../expcatalog/JobStatusRepositoryTest.java        |    134 +
 .../expcatalog/NotificationRepositoryTest.java     |     68 +
 .../expcatalog/ProcessErrorRepositoryTest.java     |    106 +
 .../expcatalog/ProcessInputRepositoryTest.java     |    111 +
 .../expcatalog/ProcessOutputRepositoryTest.java    |    112 +
 .../expcatalog/ProcessRepositoryTest.java          |    153 +
 .../expcatalog/ProcessStatusRepositoryTest.java    |    123 +
 .../expcatalog/ProjectRepositoryTest.java          |    102 +
 .../expcatalog/QueueStatusRepositoryTest.java      |     63 +
 .../expcatalog/TaskErrorRepositoryTest.java        |    117 +
 .../expcatalog/TaskRepositoryTest.java             |    126 +
 .../expcatalog/TaskStatusRepositoryTest.java       |     94 +
 .../expcatalog/UserRepositoryTest.java             |    133 +
 .../replicacatalog/DataProductRepositoryTest.java  |    141 +
 .../DataReplicaLocationRepositoryTest.java         |    106 +
 .../workflowcatalog/WorkflowRepositoryTest.java    |    171 +
 .../replica/catalog/ReplicaCatalogTest.java        |    105 -
 .../airavata/replica/catalog/util/Initialize.java  |    313 -
 .../src/test/resources/airavata-server.properties  |     72 +
 .../registry-core/src/test/resources/logback.xml   |     31 +
 modules/registry/registry-cpi/pom.xml              |      2 +-
 .../registry/cpi/ApplicationDeployment.java        |     26 +-
 .../registry/cpi/ApplicationInterface.java         |     14 +
 .../registry/cpi/DataProductInterface.java         |     28 +
 .../registry/cpi/DataReplicaLocationInterface.java |     19 +
 .../airavata/registry/cpi/ReplicaCatalog.java      |     17 +-
 .../airavata/registry/cpi/UsrResourceProfile.java  |     59 +-
 .../airavata/registry/cpi/WorkflowCatalog.java     |     22 +-
 modules/registry/registry-server/pom.xml           |      4 +-
 .../registry-server/registry-api-service/pom.xml   |     19 +-
 .../registry/api/service/RegistryAPIServer.java    |     44 +-
 .../api/service/handler/RegistryServerHandler.java |   1778 +-
 .../messaging/RegistryServiceDBEventHandler.java   |     67 +-
 .../api/service/util/AppCatalogInitUtil.java       |    187 -
 .../registry/api/service/util/ConnectionPool.java  |    381 -
 .../registry/api/service/util/Constants.java       |      9 +-
 .../registry/api/service/util/DatabaseCreator.java |    378 -
 .../service/util/ExperimentCatalogInitUtil.java    |    224 -
 .../registry/api/service/util/JdbcStorage.java     |    175 -
 .../api/service/util/ReplicaCatalogInitUtil.java   |    179 -
 .../api/service/util/WorkflowCatalogInitUtil.java  |    179 -
 .../registry-server/registry-api-stubs/pom.xml     |      4 +-
 .../airavata/registry/api/RegistryService.java     | 107577 ++++++++++------
 .../api/exception/RegistryServiceException.java    |     33 +-
 .../registry/api/registry_apiConstants.java        |     33 +-
 modules/registry/registry-tools/jpa-gen/pom.xml    |      2 +-
 modules/registry/registry-tools/pom.xml            |      2 +-
 .../registry/registry-tools/registry-tool/pom.xml  |      2 +-
 .../DeltaScripts/appCatalog_schema_delta.sql       |    477 +
 .../DeltaScripts/credential_store_schema_delta.sql |     32 +
 .../experimentCatalog_schema_delta.sql             |    106 +
 .../DeltaScripts/profile_service_schema_delta.sql  |     68 +
 .../DeltaScripts/replicaCatalog_schema_delta.sql   |     43 +
 .../DeltaScripts/sharingCatalog_schema_delta.sql   |     36 +
 .../next/DeltaScripts/appCatalog_schema_delta.sql  |     21 +
 .../DeltaScripts/credential_store_schema_delta.sql |     21 +
 .../experimentCatalog_schema_delta.sql             |     21 +
 .../DeltaScripts/profile_service_schema_delta.sql  |     21 +
 .../DeltaScripts/replicaCatalog_schema_delta.sql   |     21 +
 .../DeltaScripts/sharingCatalog_schema_delta.sql   |     21 +
 modules/security/pom.xml                           |      2 +-
 .../security/AiravataSecurityException.java        |      5 +
 .../airavata/security/util/TrustStoreManager.java  |     22 +-
 modules/server/pom.xml                             |      2 +-
 modules/sharing-registry/pom.xml                   |      4 +-
 .../sharing-data-migrator/README.md                |      9 +
 .../sharing-registry/sharing-data-migrator/pom.xml |     74 +-
 .../migrator/airavata/AiravataDataMigrator.java    |    539 +-
 .../migrator/airavata/ConnectionFactory.java       |     23 +-
 .../src/main/resources/.gitignore                  |      1 +
 .../resources/airavata-server.properties.sample    |     66 +
 .../sharing-registry-distribution/pom.xml          |      8 +-
 .../sharing-registry-server/pom.xml                |     19 +-
 .../registry/db/entities/GroupAdminEntity.java     |     14 +
 .../registry/db/entities/UserGroupEntity.java      |     12 +
 .../db/repositories/AbstractRepository.java        |      7 +-
 .../registry/db/repositories/EntityRepository.java |     41 +-
 .../db/repositories/GroupMembershipRepository.java |      4 +-
 .../db/repositories/SharingRepository.java         |     20 +-
 .../db/repositories/UserGroupRepository.java       |     20 +-
 .../registry/db/repositories/UserRepository.java   |     23 +-
 .../sharing/registry/db/utils/ConnectionPool.java  |    381 -
 .../sharing/registry/db/utils/DatabaseCreator.java |    352 -
 .../sharing/registry/db/utils/JPAUtils.java        |    196 +-
 .../sharing/registry/db/utils/JdbcStorage.java     |    174 -
 .../db/utils/SharingRegistryDBInitConfig.java      |     46 +
 .../db/utils/SharingRegistryJDBCConfig.java        |     67 +
 .../messaging/SharingServiceDBEventHandler.java    |     94 +-
 .../registry/server/SharingRegistryServer.java     |     23 +-
 .../server/SharingRegistryServerHandler.java       |    115 +-
 .../airavata/sharing/registry/utils/Constants.java |      8 +-
 .../registry/utils/ThriftDataModelConversion.java  |      1 +
 .../registry/SharingRegistryServerHandlerTest.java |    120 +-
 .../registry/SharingRegistryServiceTest.java       |     57 +-
 .../airavata/sharing/registry/util/Initialize.java |    296 -
 .../src/test/resources/logback.xml                 |     31 +
 .../sharing-registry-stubs/pom.xml                 |      6 +-
 .../airavata/sharing/registry/models/Domain.java   |     27 +-
 .../registry/models/DuplicateEntryException.java   |     12 +-
 .../airavata/sharing/registry/models/Entity.java   |     70 +-
 .../sharing/registry/models/EntityType.java        |     32 +-
 .../sharing/registry/models/GroupAdmin.java        |     17 +-
 .../sharing/registry/models/GroupMembership.java   |     36 +-
 .../sharing/registry/models/PermissionType.java    |     32 +-
 .../sharing/registry/models/SearchCriteria.java    |     25 +-
 .../airavata/sharing/registry/models/Sharing.java  |     46 +-
 .../registry/models/SharingRegistryException.java  |     12 +-
 .../airavata/sharing/registry/models/User.java     |     50 +-
 .../sharing/registry/models/UserGroup.java         |    224 +-
 .../service/cpi/SharingRegistryService.java        |   3659 +-
 .../registry/service/cpi/sharing_cpiConstants.java |     33 +-
 .../sharing-service-docs/api-docs/index.html       |      2 +
 .../sharing-service-docs/api-docs/sharing_cpi.html |     22 +-
 .../api-docs/sharing_models.html                   |      2 +
 .../sharing-registry/thrift_models/thrift-gen.sh   |     29 +-
 pom.xml                                            |     70 +-
 .../airavata-apis/airavata_api.thrift              |    471 +-
 .../component-cpis/credential-store-cpi.thrift     |     26 +-
 .../component-cpis/generate-cpi-stubs.sh           |     33 +-
 .../component-cpis/registry-api.thrift             |    210 +-
 .../component-cpis/sharing_cpi.thrift              |     18 +-
 .../data-models/airavata_data_models.thrift        |      1 +
 .../app-catalog-models/app_catalog_models.thrift   |      3 +-
 .../application_io_models.thrift                   |      3 +-
 .../app-catalog-models/parser_model.thrift         |     87 +
 .../credential_store_data_models.thrift            |     10 +-
 .../airavata_workflow_model.thrift                 |    158 +
 .../experiment_model.thrift                        |      9 +-
 .../experiment-catalog-models/process_model.thrift |     19 +-
 .../experiment-catalog-models/status_models.thrift |     12 +-
 .../data_movement_models.thrift                    |      3 +
 .../gateway_groups_model.thrift                    |     31 +
 .../group_resource_profile_model.thrift            |    107 +
 .../resource_catalog_models.thrift                 |      3 +-
 .../storage_resource_model.thrift                  |      2 +
 .../user_resource_profile_model.thrift             |      4 -
 .../sharing-models/sharing_models.thrift           |      4 +-
 .../group_manager_model.thrift                     |     12 +-
 .../generate-thrift-stubs.sh                       |      2 +-
 .../service-cpis/generate-service-cpi-stubs.sh     |     33 +-
 .../group-manager/group-manager-cpi.thrift         |     15 +
 .../iam-admin-services-cpi.thrift                  |     29 +-
 .../profile-tenant/profile-tenant-cpi.thrift       |      2 +-
 .../profile-user/profile-user-cpi.thrift           |     14 +
 tools/load-client/pom.xml                          |     12 +-
 tools/pom.xml                                      |      4 +-
 1687 files changed, 547370 insertions(+), 204310 deletions(-)



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