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From machris...@apache.org
Subject [airavata] branch develop updated (a4f8b39 -> 73f34cb)
Date Wed, 02 Oct 2019 16:15:08 GMT
This is an automated email from the ASF dual-hosted git repository.

machristie pushed a change to branch develop
in repository https://gitbox.apache.org/repos/asf/airavata.git.


    from a4f8b39  AIRAVATA-3081 Ansible: django portal tus config
     add ddf51e4  Enabling streaming in file transfers to avoid using temporary storage
     add dd6bdc0  Search SRA beta Django portal
     add 4bc05c0  Search SRA beta Django portal
     add ba9dea7  Search SRA beta Django portal
     add be506d3  Added SSL certificates in to the gateway portal domain
     add b99d30c  Changed the gateway domain
     add 1b6789c  Added gateway SSH key
     add 6624228  Increased the input file size in seagrid PGA
     add 4c69480  Added django_file_upload_max_file_size_mb Ansible config
     add 8faef3b  Adding a configuration to enable streaming transfer
     add 03a0fe3  Ansible: for Django, install opt. mysql dependencies
     add 80157e5  AIRAVATA-3211 Wildcard matches update output values
     add 64b24c4  increased the input file size
     add aac966f  Remove letsencrypt specific versions
     add d38061a  Temporarily deploy out WIP branches for dreg integration
     add aab692e  adding the new Gateways19 portal
     add a755da4  adding the new Gateways19 portal
     add ae996ce  adding the new Gateways19 portal
     add 716a43b  adding the new Gateways19 portal
     add 081b3c4  adding the new Gateways19 portal
     add 7075499  typo fix
     add 1b2fd78  Adding gateways19-tutorial app to gateways19 deployment
     add ee0972e  Hide data parsers from gateways19 django instance
     add 6d4a98a  Disabling streaming transfer
     add fa46337  Removing duplicate configurations
     add 04b3c3c  Changed to use the production keycloak tenant
     add 2b7752d  Changed to use the production keycloak tenant
     add 2ef9f8f  Adding Django SimCCS portal to staging environment
     add b1bb586  Adding Django SimCCS portal to staging environment
     add 6491e24  Adding Django SimCCS portal to staging environment
     add 1cce00f  Adding Django SimCCS portal to staging environment
     add 9e04fac  Adding Django SimCCS portal to staging environment
     add bebae89  Adding Simccs map tool
     add 814af4a  Adding Simccs map tool
     add 56ee906  Adding staging simccs django settings, ssl
     add eb39d24  django_extra_settiings converts yaml data to arbitrary json
     add 88ebfc3  Ansible: setting staging simccs data store key
     add 73f34cb  Fix installing data store ssh key for Django deploys

No new revisions were added by this update.

Summary of changes:
 .../scigap/develop/host_vars/simccs/vars.yml       |   2 +
 .../scigap/staging/host_vars/dreg/vars.yml         |   5 +
 .../host_vars/{pearc19 => gateways19}/vars.yml     |  23 ++-
 .../scigap/staging/host_vars/gateways19/vault.yml  |  15 ++
 .../scigap/staging/host_vars/seagrid/vars.yml      |   2 +
 .../host_vars/{seagrid => searchsra}/vars.yml      |  27 +--
 .../scigap/staging/host_vars/searchsra/vault.yml   |  15 ++
 .../simccs/files/django-ssl-vhost.conf.j2          |   0
 .../{develop => staging}/host_vars/simccs/vars.yml |  43 ++--
 .../scigap/staging/host_vars/simccs/vault.yml      |  15 ++
 dev-tools/ansible/inventories/scigap/staging/hosts |   3 +
 .../scigap/staging/pga_config/seagrid/vars.yml     |   2 +
 dev-tools/ansible/roles/django/defaults/main.yml   |   1 +
 dev-tools/ansible/roles/django/tasks/main.yml      |  12 +-
 .../roles/django/templates/settings_local.py.j2    |   4 +-
 .../participant/airavata-server.properties.j2      |   5 +
 dev-tools/ansible/roles/httpd/tasks/main.yml       |   7 -
 dev-tools/ansible/roles/letsencrypt/tasks/main.yml |   6 +-
 .../apache/airavata/agents/api/AgentAdaptor.java   |  14 +-
 .../api/{CommandOutput.java => FileMetadata.java}  |  38 +++-
 .../agents/api/StorageResourceAdaptor.java         |  11 +-
 .../airavata/agents/streaming/TransferResult.java} |  47 +++--
 .../agents/streaming/VirtualInputStream.java       |  82 ++++++++
 .../agents/streaming/VirtualOutputStream.java      |  54 +++++
 .../agents/streaming/VirtualStreamProducer.java    |  55 +++++
 .../airavata/helix/agent/ssh/SshAgentAdaptor.java  |  21 +-
 .../agent/storage/StorageResourceAdaptorImpl.java  |   8 +-
 .../airavata/helix/adaptor/SSHJAgentAdaptor.java   | 138 ++++++++++++-
 .../airavata/helix/adaptor/SSHJStorageAdaptor.java |   8 +-
 .../airavata/helix/impl/task/AiravataTask.java     |  60 ++++--
 .../helix/impl/task/staging/ArchiveTask.java       |  12 +-
 .../helix/impl/task/staging/DataStagingTask.java   | 229 +++++++++++++++++----
 .../impl/task/staging/InputDataStagingTask.java    |  55 +----
 .../impl/task/staging/OutputDataStagingTask.java   |  32 +--
 .../impl/task/submission/JobSubmissionTask.java    |   6 +-
 .../apache/airavata/common/utils/Constants.java    |   2 +
 .../airavata/common/utils/ServerSettings.java      |   4 +
 37 files changed, 817 insertions(+), 246 deletions(-)
 copy dev-tools/ansible/inventories/scigap/staging/host_vars/{pearc19 => gateways19}/vars.yml
(58%)
 create mode 100644 dev-tools/ansible/inventories/scigap/staging/host_vars/gateways19/vault.yml
 copy dev-tools/ansible/inventories/scigap/staging/host_vars/{seagrid => searchsra}/vars.yml
(50%)
 create mode 100644 dev-tools/ansible/inventories/scigap/staging/host_vars/searchsra/vault.yml
 copy dev-tools/ansible/inventories/scigap/{develop => staging}/host_vars/simccs/files/django-ssl-vhost.conf.j2
(100%)
 copy dev-tools/ansible/inventories/scigap/{develop => staging}/host_vars/simccs/vars.yml
(54%)
 create mode 100644 dev-tools/ansible/inventories/scigap/staging/host_vars/simccs/vault.yml
 copy modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/api/{CommandOutput.java
=> FileMetadata.java} (61%)
 copy modules/{commons/src/main/java/org/apache/airavata/common/logging/Exception.java =>
airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/streaming/TransferResult.java}
(57%)
 create mode 100644 modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/streaming/VirtualInputStream.java
 create mode 100644 modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/streaming/VirtualOutputStream.java
 create mode 100644 modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/streaming/VirtualStreamProducer.java


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