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From dimuthu...@apache.org
Subject [airavata] 01/01: Merge branch 'staging' into develop
Date Fri, 14 Sep 2018 18:04:46 GMT
This is an automated email from the ASF dual-hosted git repository.

dimuthuupe pushed a commit to branch develop
in repository https://gitbox.apache.org/repos/asf/airavata.git

commit 3e77e160986d53f0d5d8db1bd62102a937b478ef
Merge: 42be237 2af9090
Author: Dimuthu Wannipurage <dimuthu.wannipurage@datasprouts.com>
AuthorDate: Fri Sep 14 14:04:24 2018 -0400

    Merge branch 'staging' into develop

 modules/airavata-helix/helix-distribution/pom.xml  |  16 ++
 .../src/main/assembly/parser-wm-bin-assembly.xml   |  85 +++++++
 .../resources/parser-wm/bin/parser-wm-daemon.sh    |  91 ++++++++
 .../src/main/resources/parser-wm/bin/parser-wm.sh  |  71 ++++++
 .../src/main/resources/parser-wm/bin/setenv.sh     |  46 ++++
 .../parser-wm/conf}/airavata-server.properties     |  35 +--
 .../src/main/resources/parser-wm/conf/logback.xml  |  53 +++++
 .../helix/impl/participant/GlobalParticipant.java  |   3 +-
 .../airavata/helix/impl/task/AiravataTask.java     |  83 ++++---
 .../airavata/helix/impl/task/env/EnvSetupTask.java |   2 +-
 .../helix/impl/task/parsing/CatalogEntry.java      | 249 ++++++++++++++++++++
 .../helix/impl/task/parsing/CatalogGraph.java      |  78 +++++++
 .../helix/impl/task/parsing/CatalogUtil.java       | 105 +++++++++
 .../helix/impl/task/parsing/DataParsingTask.java   | 206 ++++++++++++++++
 .../helix/impl/task/parsing/ParserRequest.java     |  84 +++++++
 .../parsing/shortestpath/DijkstraShortestPath.java | 258 +++++++++++++++++++++
 .../task/parsing/shortestpath/DirectedGraph.java   |  73 ++++++
 .../helix/impl/task/parsing/shortestpath/Edge.java |  64 +++++
 .../impl/task/parsing/shortestpath/Vertex.java     |  63 +++++
 .../helix/impl/task/staging/DataStagingTask.java   |   8 +-
 .../impl/task/staging/InputDataStagingTask.java    |   6 +-
 .../impl/task/staging/OutputDataStagingTask.java   |   2 +-
 .../helix/impl/workflow/ParserWorkflowManager.java | 121 ++++++++++
 .../src/main/resources/airavata-server.properties  |   8 +-
 .../apache/airavata/helix/core/AbstractTask.java   |   9 +
 .../airavata/helix/core/util/MonitoringUtil.java   |  25 +-
 .../resources/email-monitor/conf/email-config.yaml |   1 +
 27 files changed, 1777 insertions(+), 68 deletions(-)


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