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From dimuthu...@apache.org
Subject [airavata] branch staging updated (c1b12e5 -> 2af9090)
Date Fri, 07 Sep 2018 01:09:40 GMT
This is an automated email from the ASF dual-hosted git repository.

dimuthuupe pushed a change to branch staging
in repository https://gitbox.apache.org/repos/asf/airavata.git.


    from c1b12e5  Adding missing path separator for retry counter
     add b64f33b  implementation of DataParsingTask, CatalogEntry, and CatalogUtil
     add 1447321  Catalog Graph implementation with Dijkstra shortest path algorithm
     add e0486d4  Parser workflow manager and parser request implementation
     add 4ff6b34  distribution of parser workflow manager
     add 9b40364  changed the way of getting shortest path entries considering application
and multiple operations
     add 8a4eb0a  avoid source vertex self loops
     new 2af9090  Merge pull request #206 from Lahiru-J/staging

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 modules/airavata-helix/helix-distribution/pom.xml  |  16 ++
 ...bin-assembly.xml => parser-wm-bin-assembly.xml} |   7 +-
 .../bin/parser-wm-daemon.sh}                       |   8 +-
 .../bin/pre-wm.sh => parser-wm/bin/parser-wm.sh}   |   6 +-
 .../resources/{pre-wm => parser-wm}/bin/setenv.sh  |   4 +-
 .../conf/airavata-server.properties                |  15 +-
 .../src/main/resources/parser-wm/conf}/logback.xml |   0
 .../helix/impl/participant/GlobalParticipant.java  |   3 +-
 .../helix/impl/task/parsing/CatalogEntry.java      | 249 ++++++++++++++++++++
 .../helix/impl/task/parsing/CatalogGraph.java      |  78 +++++++
 .../helix/impl/task/parsing/CatalogUtil.java       | 105 +++++++++
 .../helix/impl/task/parsing/DataParsingTask.java   | 206 ++++++++++++++++
 .../helix/impl/task/parsing/ParserRequest.java     |  84 +++++++
 .../parsing/shortestpath/DijkstraShortestPath.java | 258 +++++++++++++++++++++
 .../task/parsing/shortestpath/DirectedGraph.java   |  73 ++++++
 .../helix/impl/task/parsing/shortestpath/Edge.java |  64 +++++
 .../impl/task/parsing/shortestpath/Vertex.java}    |  61 ++---
 .../helix/impl/workflow/ParserWorkflowManager.java | 121 ++++++++++
 .../src/main/resources/airavata-server.properties  |   8 +-
 19 files changed, 1316 insertions(+), 50 deletions(-)
 copy modules/airavata-helix/helix-distribution/src/main/assembly/{controller-bin-assembly.xml
=> parser-wm-bin-assembly.xml} (93%)
 copy modules/airavata-helix/helix-distribution/src/main/resources/{controller/bin/controller-daemon.sh
=> parser-wm/bin/parser-wm-daemon.sh} (90%)
 copy modules/airavata-helix/helix-distribution/src/main/resources/{pre-wm/bin/pre-wm.sh =>
parser-wm/bin/parser-wm.sh} (90%)
 copy modules/airavata-helix/helix-distribution/src/main/resources/{pre-wm => parser-wm}/bin/setenv.sh
(99%)
 mode change 100755 => 100644
 copy modules/airavata-helix/helix-distribution/src/main/resources/{pre-wm => parser-wm}/conf/airavata-server.properties
(83%)
 copy modules/{job-monitor/real-time-monitor/src/main/resources => airavata-helix/helix-distribution/src/main/resources/parser-wm/conf}/logback.xml
(100%)
 create mode 100644 modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/CatalogEntry.java
 create mode 100644 modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/CatalogGraph.java
 create mode 100644 modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/CatalogUtil.java
 create mode 100644 modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/DataParsingTask.java
 create mode 100644 modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/ParserRequest.java
 create mode 100644 modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/shortestpath/DijkstraShortestPath.java
 create mode 100644 modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/shortestpath/DirectedGraph.java
 create mode 100644 modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/shortestpath/Edge.java
 copy modules/{registry/registry-core/src/main/java/org/apache/airavata/registry/core/workflow/catalog/model/Edge_PK.java
=> airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/shortestpath/Vertex.java}
(51%)
 create mode 100644 modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/workflow/ParserWorkflowManager.java


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