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From machris...@apache.org
Subject [airavata] branch group-based-auth updated (0c96efb -> 2d7227a)
Date Mon, 04 Jun 2018 12:18:13 GMT
This is an automated email from the ASF dual-hosted git repository.

machristie pushed a change to branch group-based-auth
in repository https://gitbox.apache.org/repos/asf/airavata.git.


    from 0c96efb  AIRAVATA-2795 KeyCloakSecurityManager to use GatewayGroups instead of roles
     add 176d1b7  Adding/modifying expcatalog entities
     add c26d7e4  Adding utils
     add 24bfe90  Modifying tests
     add dd2a5d8  Adding repository classes
     add bbe3781  Resolving merge conflicts
     add 2f4e344  Making changes to repository classes
     add 529ac9d  Making changes to repository classes
     add 9f01566  Merge remote-tracking branch 'upstream/group-based-auth' into group-based-auth
     add c27b477  Merge remote-tracking branch 'upstream/group-based-auth' into group-based-auth
     add 9092156  Initial commit for tests
     add bf2bbf4  Making changes to Gateway and Notification tests
     add 5d176dd  Adding tests for Project
     add ce87faf  Adding/modifying tests
     add c94aa67  Deleting gateway and project entities in tests
     add d89b1b6  Removing unwanted repositories and tests
     add 2995f99  Adding test for ExperimentSummaryRepository
     add b86eea7  Making final test changes
     add aa23561  Making changes to method calls in RegistryServerHandler
     add 3a8dc0d  Removing outdated entity class
     add 6b5363a  Resolving merge conflict
     add 3fe6d22  Updating entities according to expcatalog-mysql.sql
     add 638b3f9  Resolving review comments
     add 2669ea0  Adding new repositories for experiments and cleaning up some tests
     add 7c12e1b  Adding new process repositories
     add 75aff2d  Adding new task repositories
     add 34b9f6d  Adding new job repository
     add 366ca64  Merge remote-tracking branch 'upstream/group-based-auth' into group-based-auth
     add 4a12fdc  Merge remote-tracking branch 'upstream/group-based-auth' into group-based-auth
     add bc5971d  Adding license header
     new d198a31  Merge branch 'group-based-auth' of https://github.com/tilaks26/airavata
into tilaks26-group-based-auth
     new 2d7227a  Merge branch 'tilaks26-group-based-auth' into group-based-auth

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .../airavata/model/status/ExperimentStatus.java    | 113 +++++-
 .../apache/airavata/model/status/JobStatus.java    | 113 +++++-
 .../airavata/model/status/ProcessStatus.java       | 113 +++++-
 .../apache/airavata/model/status/TaskStatus.java   | 113 +++++-
 .../core/entities/expcatalog/ExperimentEntity.java | 116 +++---
 .../entities/expcatalog/ExperimentErrorEntity.java |  60 ++--
 .../entities/expcatalog/ExperimentErrorPK.java     |  52 +--
 .../entities/expcatalog/ExperimentInputEntity.java |  93 +++--
 .../entities/expcatalog/ExperimentInputPK.java     |  51 +--
 .../expcatalog/ExperimentOutputEntity.java         |  78 ++--
 .../entities/expcatalog/ExperimentOutputPK.java    |  51 +--
 .../expcatalog/ExperimentStatusEntity.java         |  51 ++-
 .../entities/expcatalog/ExperimentStatusPK.java    |  61 ++--
 .../expcatalog/ExperimentSummaryEntity.java        | 158 ++++++++
 .../GatewayEntity.java                             | 114 +++---
 .../entities/expcatalog/GatewayWorkerEntity.java   |  61 ++++
 .../core/entities/expcatalog/GatewayWorkerPK.java  |  75 ++++
 .../core/entities/expcatalog/JobEntity.java        |  72 ++--
 .../expcatalog/{JobStatusPK.java => JobPK.java}    |  66 ++--
 .../core/entities/expcatalog/JobStatusEntity.java  |  75 +++-
 .../core/entities/expcatalog/JobStatusPK.java      |  69 ++--
 .../NotificationEntity.java                        |  68 ++--
 .../core/entities/expcatalog/ProcessEntity.java    | 159 +++++---
 .../entities/expcatalog/ProcessErrorEntity.java    |  61 ++--
 .../core/entities/expcatalog/ProcessErrorPK.java   |  52 +--
 .../entities/expcatalog/ProcessInputEntity.java    | 104 ++++--
 .../core/entities/expcatalog/ProcessInputPK.java   |  51 +--
 .../entities/expcatalog/ProcessOutputEntity.java   |  83 +++--
 .../core/entities/expcatalog/ProcessOutputPK.java  |  47 +--
 ...ity.java => ProcessResourceScheduleEntity.java} |  93 ++---
 .../entities/expcatalog/ProcessStatusEntity.java   |  51 ++-
 .../core/entities/expcatalog/ProcessStatusPK.java  |  61 ++--
 .../ProjectEntity.java                             |  48 ++-
 .../entities/expcatalog/ProjectUserEntity.java     |  61 ++++
 .../core/entities/expcatalog/ProjectUserPK.java    |  75 ++++
 .../entities/expcatalog/QueueStatusEntity.java     | 109 ++++++
 .../core/entities/expcatalog/QueueStatusPK.java    |  89 +++++
 .../core/entities/expcatalog/TaskEntity.java       |  85 +++--
 .../core/entities/expcatalog/TaskErrorEntity.java  |  61 ++--
 .../core/entities/expcatalog/TaskErrorPK.java      |  52 +--
 .../core/entities/expcatalog/TaskStatusEntity.java |  51 ++-
 .../core/entities/expcatalog/TaskStatusPK.java     |  61 ++--
 ...ntity.java => UserConfigurationDataEntity.java} | 185 ++++++++--
 .../expcatalog/UserConfigurationEntity.java        | 131 -------
 .../expcatalog/ExpCatAbstractRepository.java       | 111 ++++++
 .../expcatalog/ExperimentErrorRepository.java      |  76 ++++
 .../expcatalog/ExperimentInputRepository.java      |  71 ++++
 .../expcatalog/ExperimentOutputRepository.java     |  73 ++++
 .../expcatalog/ExperimentRepository.java           | 194 +++++++---
 .../expcatalog/ExperimentStatusRepository.java     | 103 ++++++
 .../expcatalog/ExperimentSummaryRepository.java    | 291 +++++++++++++++
 .../repositories/expcatalog/GatewayRepository.java | 106 ++++++
 .../repositories/expcatalog/JobRepository.java     | 137 +++++++
 .../expcatalog/JobStatusRepository.java            | 107 ++++++
 .../expcatalog/NotificationRepository.java         | 104 ++++++
 .../expcatalog/ProcessErrorRepository.java         |  74 ++++
 .../expcatalog/ProcessInputRepository.java         |  71 ++++
 .../expcatalog/ProcessOutputRepository.java        |  71 ++++
 .../repositories/expcatalog/ProcessRepository.java | 165 +++++++++
 .../expcatalog/ProcessStatusRepository.java        | 102 ++++++
 .../repositories/expcatalog/ProjectRepository.java | 205 +++++++++++
 .../expcatalog/QueueStatusRepository.java          |  55 +++
 .../expcatalog/TaskErrorRepository.java            |  54 +++
 .../repositories/expcatalog/TaskRepository.java    | 133 +++++++
 .../expcatalog/TaskStatusRepository.java           |  79 ++++
 .../workspacecatalog/GatewayRepository.java        |  36 --
 .../workspacecatalog/NotificationRepository.java   |  35 --
 .../airavata/registry/core/utils/DBConstants.java  |  55 +++
 .../ExpCatalogUtils.java}                          |  24 +-
 .../core/utils/JPAUtil/ExpCatalogJPAUtils.java     |  84 +++++
 .../registry/core/utils/QueryConstants.java        |  33 ++
 .../src/main/resources/META-INF/persistence.xml    |  23 +-
 .../src/main/resources/expcatalog-derby.sql        | 397 ++++++++++++++++++++
 .../src/main/resources/expcatalog-mysql.sql        | 400 +++++++++++++++++++++
 .../src/main/resources/experiment_catalog.sql      | 285 ---------------
 .../src/main/resources/workspace_catalog.sql       | 125 -------
 .../repositories/ExperimentRepositoryTest.java     | 157 --------
 .../core/repositories/WorkspaceRepositoryTest.java | 279 --------------
 .../expcatalog/ExperimentErrorRepositoryTest.java  | 113 ++++++
 .../expcatalog/ExperimentInputRepositoryTest.java  | 116 ++++++
 .../expcatalog/ExperimentOutputRepositoryTest.java | 116 ++++++
 .../expcatalog/ExperimentRepositoryTest.java       | 121 +++++++
 .../expcatalog/ExperimentStatusRepositoryTest.java | 110 ++++++
 .../ExperimentSummaryRepositoryTest.java           | 208 +++++++++++
 .../expcatalog/GatewayRepositoryTest.java          |  83 +++++
 .../repositories/expcatalog/JobRepositoryTest.java | 147 ++++++++
 .../expcatalog/JobStatusRepositoryTest.java        | 148 ++++++++
 .../expcatalog/NotificationRepositoryTest.java     |  82 +++++
 .../expcatalog/ProcessErrorRepositoryTest.java     | 119 ++++++
 .../expcatalog/ProcessInputRepositoryTest.java     | 122 +++++++
 .../expcatalog/ProcessOutputRepositoryTest.java    | 123 +++++++
 .../expcatalog/ProcessRepositoryTest.java          | 127 +++++++
 .../expcatalog/ProcessStatusRepositoryTest.java    | 117 ++++++
 .../expcatalog/ProjectRepositoryTest.java          | 111 ++++++
 .../expcatalog/QueueStatusRepositoryTest.java      |  78 ++++
 .../expcatalog/TaskErrorRepositoryTest.java        | 131 +++++++
 .../expcatalog/TaskRepositoryTest.java             | 127 +++++++
 .../expcatalog/TaskStatusRepositoryTest.java       | 108 ++++++
 .../repositories/expcatalog/util/Initialize.java   | 293 +++++++++++++++
 .../api/service/handler/RegistryServerHandler.java | 334 +++++++----------
 .../experiment-catalog-models/status_models.thrift |  12 +-
 101 files changed, 8691 insertions(+), 2263 deletions(-)
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/expcatalog/ExperimentSummaryEntity.java
 rename modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/{workspacecatalog
=> expcatalog}/GatewayEntity.java (83%)
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/expcatalog/GatewayWorkerEntity.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/expcatalog/GatewayWorkerPK.java
 copy modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/expcatalog/{JobStatusPK.java
=> JobPK.java} (50%)
 rename modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/{workspacecatalog
=> expcatalog}/NotificationEntity.java (64%)
 rename modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/expcatalog/{ProcessResourceSchedulingEntity.java
=> ProcessResourceScheduleEntity.java} (65%)
 rename modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/{workspacecatalog
=> expcatalog}/ProjectEntity.java (77%)
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/expcatalog/ProjectUserEntity.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/expcatalog/ProjectUserPK.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/expcatalog/QueueStatusEntity.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/expcatalog/QueueStatusPK.java
 rename modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/expcatalog/{ComputeResourceSchedulingEntity.java
=> UserConfigurationDataEntity.java} (53%)
 delete mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/expcatalog/UserConfigurationEntity.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ExpCatAbstractRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ExperimentErrorRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ExperimentInputRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ExperimentOutputRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ExperimentStatusRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ExperimentSummaryRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/GatewayRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/JobRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/JobStatusRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/NotificationRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ProcessErrorRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ProcessInputRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ProcessOutputRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ProcessRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ProcessStatusRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/ProjectRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/QueueStatusRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/TaskErrorRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/TaskRepository.java
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/expcatalog/TaskStatusRepository.java
 delete mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/workspacecatalog/GatewayRepository.java
 delete mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/workspacecatalog/NotificationRepository.java
 rename modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/{repositories/workspacecatalog/ProjectRepository.java
=> utils/ExpCatalogUtils.java} (53%)
 create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/utils/JPAUtil/ExpCatalogJPAUtils.java
 create mode 100644 modules/registry-refactoring/src/main/resources/expcatalog-derby.sql
 create mode 100644 modules/registry-refactoring/src/main/resources/expcatalog-mysql.sql
 delete mode 100644 modules/registry-refactoring/src/main/resources/experiment_catalog.sql
 delete mode 100644 modules/registry-refactoring/src/main/resources/workspace_catalog.sql
 delete mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/ExperimentRepositoryTest.java
 delete mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/WorkspaceRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ExperimentErrorRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ExperimentInputRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ExperimentOutputRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ExperimentRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ExperimentStatusRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ExperimentSummaryRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/GatewayRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/JobRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/JobStatusRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/NotificationRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ProcessErrorRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ProcessInputRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ProcessOutputRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ProcessRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ProcessStatusRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/ProjectRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/QueueStatusRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/TaskErrorRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/TaskRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/TaskStatusRepositoryTest.java
 create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/expcatalog/util/Initialize.java

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