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From scnakand...@apache.org
Subject [45/61] [abbrv] airavata git commit: Merge remote-tracking branch 'upstream/develop' into develop
Date Wed, 24 May 2017 21:34:55 GMT
Merge remote-tracking branch 'upstream/develop' into develop


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/9f57e1f3
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/9f57e1f3
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/9f57e1f3

Branch: refs/heads/master
Commit: 9f57e1f3d03d14423d142ee64c0815b6721d2e4e
Parents: 7177cac e988672
Author: Ajinkya Dhamnaskar <adhamnas@umail.iu.edu>
Authored: Wed May 17 13:59:04 2017 -0400
Committer: Ajinkya Dhamnaskar <adhamnas@umail.iu.edu>
Committed: Wed May 17 13:59:04 2017 -0400

----------------------------------------------------------------------
 README                                          |     3 -
 airavata-api/airavata-api-server/pom.xml        |    51 +-
 .../airavata/api/server/AiravataAPIServer.java  |    12 +-
 .../api/server/AiravataDerbyServer.java         |     4 +-
 .../server/handler/AiravataServerHandler.java   |   193 +-
 .../AiravataExperimentStatusUpdator.java        |     6 +-
 .../listener/ExperimentStatusChangedEvent.java  |    19 +
 .../security/AiravataSecurityManager.java       |    43 -
 .../DefaultAiravataSecurityManager.java         |   273 -
 .../api/server/security/IdentityContext.java    |    44 -
 .../airavata/api/server/security/Main.java      |   179 -
 .../server/security/SecurityManagerFactory.java |    60 -
 .../server/security/authzcache/AuthzCache.java  |    61 -
 .../security/authzcache/AuthzCacheEntry.java    |    63 -
 .../security/authzcache/AuthzCacheIndex.java    |    90 -
 .../security/authzcache/AuthzCacheManager.java  |    80 -
 .../authzcache/AuthzCacheManagerFactory.java    |    60 -
 .../security/authzcache/AuthzCachedStatus.java  |    34 -
 .../authzcache/DefaultAuthzCacheManager.java    |   106 -
 .../security/interceptor/SecurityCheck.java     |    36 -
 .../interceptor/SecurityInterceptor.java        |    83 -
 .../security/interceptor/SecurityModule.java    |    43 -
 .../security/oauth/DefaultOAuthClient.java      |    91 -
 .../server/security/xacml/DefaultPAPClient.java |   125 -
 .../server/security/xacml/DefaultXACMLPEP.java  |   133 -
 .../airavata/api/server/util/Constants.java     |     4 +-
 .../api/server/util/ThriftClientPool.java       |     5 +-
 airavata-api/airavata-api-stubs/pom.xml         |    31 +-
 .../java/org/apache/airavata/api/Airavata.java  | 55575 ++++++++++-------
 .../api/client/AiravataClientFactory.java       |     4 +-
 .../airavata-cpp-sdk/pom.xml                    |    27 +-
 .../src/main/assembly/bin-assembly.xml          |    29 +-
 .../main/resources/lib/airavata/Airavata.cpp    | 17236 ++---
 .../src/main/resources/lib/airavata/Airavata.h  |  1230 +-
 .../lib/airavata/Airavata_server.skeleton.cpp   |    30 +
 .../resources/lib/airavata/airavata_api_types.h |     1 +
 .../lib/airavata/airavata_data_models_types.h   |     2 +
 .../lib/airavata/airavata_errors_types.cpp      |   205 +-
 .../lib/airavata/airavata_errors_types.h        |    44 +
 .../application_deployment_model_types.cpp      |    24 +-
 .../application_deployment_model_types.h        |    12 +-
 .../airavata/compute_resource_model_types.cpp   |    88 +
 .../lib/airavata/compute_resource_model_types.h |    36 +-
 .../lib/airavata/db_event_model_constants.cpp   |    34 +
 .../lib/airavata/db_event_model_constants.h     |    41 +
 .../lib/airavata/db_event_model_types.cpp       |   627 +
 .../lib/airavata/db_event_model_types.h         |   318 +
 .../lib/airavata/messaging_events_types.cpp     |     8 +-
 .../lib/airavata/messaging_events_types.h       |     3 +-
 .../airavata/replica_catalog_models_types.cpp   |   726 +-
 .../lib/airavata/replica_catalog_models_types.h |   274 +-
 .../airavata/tenant_profile_model_constants.cpp |    34 +
 .../airavata/tenant_profile_model_constants.h   |    41 +
 .../lib/airavata/tenant_profile_model_types.cpp |   541 +
 .../lib/airavata/tenant_profile_model_types.h   |   244 +
 .../lib/airavata/user_profile_model_types.cpp   |   239 +-
 .../lib/airavata/user_profile_model_types.h     |    59 +-
 .../airavata-php-sdk/pom.xml                    |    27 +-
 .../src/main/assembly/bin-assembly.xml          |    29 +-
 .../resources/lib/Airavata/API/Airavata.php     | 11335 ++--
 .../resources/lib/Airavata/API/Error/Types.php  |    82 +
 .../Model/AppCatalog/AppDeployment/Types.php    |    25 +-
 .../Model/AppCatalog/ComputeResource/Types.php  |    94 +-
 .../lib/Airavata/Model/Application/Io/Types.php |     6 +-
 .../lib/Airavata/Model/Data/Replica/Types.php   |   572 +-
 .../lib/Airavata/Model/Dbevent/Types.php        |   573 +
 .../Airavata/Model/Messaging/Event/Types.php    |     2 +
 .../lib/Airavata/Model/Tenant/Types.php         |   528 +
 .../resources/lib/Airavata/Model/User/Types.php |   279 +-
 .../src/main/resources/lib/Types.php            |    13 +
 .../airavata-python-sdk/pom.xml                 |    27 +-
 .../src/main/assembly/bin-assembly.xml          |    29 +-
 .../lib/apache/airavata/api/Airavata-remote     |    42 +
 .../lib/apache/airavata/api/Airavata.py         |  8090 ++-
 .../lib/apache/airavata/api/error/ttypes.py     |    76 +
 .../resources/lib/apache/airavata/api/ttypes.py |     1 +
 .../model/appcatalog/appdeployment/ttypes.py    |    19 +-
 .../model/appcatalog/computeresource/ttypes.py  |    54 +-
 .../airavata/model/data/replica/ttypes.py       |   430 +-
 .../apache/airavata/model/dbevent/__init__.py   |     1 +
 .../apache/airavata/model/dbevent/constants.py  |    11 +
 .../lib/apache/airavata/model/dbevent/ttypes.py |   494 +
 .../airavata/model/messaging/event/ttypes.py    |     3 +
 .../apache/airavata/model/tenant/__init__.py    |     1 +
 .../apache/airavata/model/tenant/constants.py   |    11 +
 .../lib/apache/airavata/model/tenant/ttypes.py  |   352 +
 .../lib/apache/airavata/model/ttypes.py         |     2 +
 .../lib/apache/airavata/model/user/ttypes.py    |   231 +-
 .../java-client-samples/pom.xml                 |    26 +-
 .../client/samples/CancelExperiments.java       |     4 +-
 .../client/samples/CreateLaunchBES.java         |     3 +-
 .../client/samples/CreateLaunchExperiment.java  |     4 +-
 .../samples/CreateLaunchExperimentUS3.java      |     2 +-
 .../client/samples/ReplicaCatalogSample.java    |     5 +-
 .../client/samples/SampleEchoExperiment.java    |     4 +-
 .../client/OAuthAppRegisteringClient.java       |     3 +-
 .../client/OAuthTokenRetrievalClient.java       |     3 +-
 .../client/secure/client/Properties.java        |     3 +-
 .../client/secure/client/SecureClient.java      |     3 +-
 .../tools/RegisterOGCEUS3Application.java       |     6 +-
 .../tools/RegisterSampleApplications.java       |     5 +-
 .../tools/RegisterSampleApplicationsUtils.java  |    19 +
 .../client/tools/RegisterUS3Application.java    |     6 +-
 airavata-api/airavata-client-sdks/pom.xml       |    26 +-
 airavata-api/airavata-data-models/pom.xml       |    31 +-
 .../ApplicationDeploymentDescription.java       |   117 +-
 .../application_deployment_modelConstants.java  |    28 +-
 .../application_interface_modelConstants.java   |    28 +-
 .../ComputeResourceDescription.java             |   404 +-
 .../computeresource/ResourceJobManagerType.java |     4 +
 .../compute_resource_modelConstants.java        |    28 +-
 .../gatewayprofile/DataStoragePreference.java   |    28 +-
 .../application/io/InputDataObjectType.java     |    63 +-
 .../credential/store/SSHCredentialSummary.java  |    28 +-
 .../model/data/replica/DataProductModel.java    |    84 +-
 .../data/replica/DataReplicaLocationModel.java  |    44 +-
 .../apache/airavata/model/dbevent/CrudType.java |    68 +
 .../airavata/model/dbevent/DBEventMessage.java  |   622 +
 .../model/dbevent/DBEventMessageContext.java    |   387 +
 .../model/dbevent/DBEventPublisher.java         |   411 +
 .../model/dbevent/DBEventPublisherContext.java  |   641 +
 .../model/dbevent/DBEventSubscriber.java        |   406 +
 .../airavata/model/dbevent/DBEventType.java     |    62 +
 .../airavata/model/dbevent/EntityType.java      |    80 +
 .../model/error/DuplicateEntryException.java    |   413 +
 .../model/messaging/event/MessageType.java      |     5 +-
 .../model/messaging/event/TaskSubmitEvent.java  |    28 +-
 .../messaging/event/TaskTerminateEvent.java     |    28 +-
 .../event/messaging_eventsConstants.java        |    28 +-
 .../apache/airavata/model/tenant/Tenant.java    |  2322 +
 .../model/tenant/TenantApprovalStatus.java      |    77 +
 .../airavata/model/user/NSFDemographics.java    |   149 +-
 .../apache/airavata/model/user/UserProfile.java |   882 +-
 .../model/workflow_data_modelConstants.java     |    28 +-
 airavata-api/airavata-model-utils/pom.xml       |    31 +-
 .../airavata/model/util/AppDeploymentUtil.java  |     4 +-
 .../airavata/model/util/AppInterfaceUtil.java   |     4 +-
 .../model/util/ComputeResourceUtil.java         |     4 +-
 .../airavata/model/util/ExecutionType.java      |     4 +-
 .../model/util/ExperimentModelUtil.java         |     4 +-
 .../airavata/model/util/ProjectModelUtil.java   |     2 +-
 airavata-api/pom.xml                            |    26 +-
 airavata-services/pom.xml                       |    70 +
 .../iam-admin-services-core/pom.xml             |    62 +
 .../core/impl/TenantManagementKeycloakImpl.java |   351 +
 .../interfaces/TenantManagementInterface.java   |   101 +
 .../services/core/tests/SetupNewGateway.java    |   117 +
 airavata-services/profile-service/pom.xml       |    39 +
 .../java-client-samples/pom.xml                 |    37 +
 .../client/samples/TenantProfileSample.java     |    61 +
 .../client/samples/UserProfileSample.java       |   124 +
 .../client/util/ProfileServiceClientUtil.java   |    47 +
 .../resources/profile-client-sample.properties  |    29 +
 .../profile-service-client-sdks/pom.xml         |    34 +
 .../profile-service-commons/pom.xml             |   117 +
 .../repositories/AbstractRepository.java        |   106 +
 .../commons/tenant/entities/GatewayEntity.java  |   254 +
 .../user/entities/NSFDemographicsEntity.java    |   108 +
 .../user/entities/UserProfileEntity.java        |   334 +
 .../profile/commons/utils/Committer.java        |    27 +
 .../profile/commons/utils/JPAConstants.java     |    34 +
 .../service/profile/commons/utils/JPAUtils.java |    79 +
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 .../profile/commons/utils/QueryConstants.java   |    23 +
 .../service/profile/commons/utils/Utils.java    |   147 +
 .../src/main/resources/META-INF/persistence.xml |    35 +
 .../profile-service-server/pom.xml              |    59 +
 .../handlers/IamAdminServicesHandler.java       |   131 +
 .../handlers/TenantProfileServiceHandler.java   |   194 +
 .../handlers/UserProfileServiceHandler.java     |   173 +
 .../profile/server/ProfileServiceServer.java    |   181 +
 .../profile/utils/ProfileServiceUtils.java      |    70 +
 .../profile-service-stubs/pom.xml               |    37 +
 .../client/ProfileServiceClientFactory.java     |    63 +
 .../admin/services/cpi/IamAdminServices.java    |  8240 +++
 .../exception/IamAdminServicesException.java    |   407 +
 .../cpi/iam_admin_services_cpiConstants.java    |    59 +
 .../tenant/cpi/TenantProfileService.java        |  8359 +++
 .../TenantProfileServiceException.java          |   407 +
 .../tenant/cpi/profile_tenant_cpiConstants.java |    59 +
 .../profile/user/cpi/UserProfileService.java    |  7894 +++
 .../exception/UserProfileServiceException.java  |   407 +
 .../user/cpi/profile_user_cpiConstants.java     |    59 +
 .../profile-service/profile-tenant-core/pom.xml |    40 +
 .../repositories/TenantProfileRepository.java   |    71 +
 .../profile-service/profile-user-core/pom.xml   |    85 +
 .../UserProfileRegistryException.java           |    28 +
 .../repositories/UserProfileRepository.java     |    91 +
 .../src/main/resources/user_profile_catalog.sql |    84 +
 .../repositories/WorkspaceRepositoryTest.java   |   176 +
 airavata-services/services-security/pom.xml     |    92 +
 .../security/AiravataSecurityManager.java       |    43 +
 .../DefaultAiravataSecurityManager.java         |   273 +
 .../service/security/IdentityContext.java       |    44 +
 .../security/KeyCloakSecurityManager.java       |   289 +
 .../apache/airavata/service/security/Main.java  |   179 +
 .../security/SecurityManagerFactory.java        |    60 +
 .../service/security/authzcache/AuthzCache.java |    61 +
 .../security/authzcache/AuthzCacheEntry.java    |    63 +
 .../security/authzcache/AuthzCacheIndex.java    |    90 +
 .../security/authzcache/AuthzCacheManager.java  |    80 +
 .../authzcache/AuthzCacheManagerFactory.java    |    60 +
 .../security/authzcache/AuthzCachedStatus.java  |    34 +
 .../authzcache/DefaultAuthzCacheManager.java    |   106 +
 .../security/interceptor/SecurityCheck.java     |    37 +
 .../interceptor/SecurityInterceptor.java        |    83 +
 .../security/interceptor/SecurityModule.java    |    43 +
 .../security/oauth/DefaultOAuthClient.java      |    91 +
 .../security/xacml/DefaultPAPClient.java        |   125 +
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 .../xbaya/concurrent/PredicatedExecutable.java  |     5 +-
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 .../xbaya/core/amazon/AmazonCredential.java     |     4 +-
 .../xbaya/core/amazon/EC2InstanceResult.java    |     4 +-
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 .../xbaya/core/generators/ImageFiler.java       |     4 +-
 .../xbaya/core/generators/JythonFiler.java      |     4 +-
 .../xbaya/core/generators/ODEScriptFiler.java   |     4 +-
 .../xbaya/core/generators/ScuflFiler.java       |     4 +-
 .../xbaya/core/generators/WorkflowFiler.java    |     4 +-
 .../xbaya/core/generators/XmlBeansFiler.java    |     4 +-
 .../core/ide/XBayaExecutionModeListener.java    |     4 +-
 .../xbaya/core/workflow/ParameterListModel.java |     4 +-
 .../xbaya/datadriven/WorkflowHarvester.java     |     4 +-
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 .../airavata/xbaya/gfac/GFacRegistryClient.java |     4 +-
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 .../xbaya/globus/FileTransferConstants.java     |     4 +-
 .../xbaya/globus/GridFTPFileTransferClient.java |    19 +
 .../xbaya/graph/controller/NodeController.java  |     4 +-
 .../xbaya/interpretor/ExperimentTemplate.java   |    19 +
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 .../xbaya/interpretor/HeaderConstants.java      |     4 +-
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 .../WorkflowInterpreterConfiguration.java       |    19 +
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 .../interpretor/WorkflowInterpreterInvoker.java |     4 +-
 .../WorkflowInterpretorEventListener.java       |    19 +
 ...WorkflowInterpretorMessageReceiverInOut.java |    19 +
 .../WorkflowInterpretorSkeleton.java            |    19 +
 .../xbaya/jython/lib/GFacServiceCreator.java    |     4 +-
 .../xbaya/jython/lib/NotificationSender.java    |    19 +
 .../xbaya/jython/lib/ServiceNotifiable.java     |     4 +-
 .../jython/lib/ServiceNotificationSender.java   |    19 +
 .../StandaloneServiceNotificationSender.java    |     4 +-
 .../xbaya/jython/lib/WorkflowNotifiable.java    |     4 +-
 .../xbaya/jython/runner/JythonClassLoader.java  |     4 +-
 .../jython/runner/JythonOneTimeRunner.java      |     4 +-
 .../jython/runner/JythonOneTimeRunnerImpl.java  |     4 +-
 .../xbaya/jython/runner/JythonRunner.java       |     4 +-
 .../xbaya/jython/script/JythonScript.java       |     4 +-
 .../xbaya/menues/tools/ToolsMenuItem.java       |     4 +-
 .../airavata/xbaya/messaging/EventData.java     |     4 +-
 .../xbaya/messaging/EventDataListener.java      |     4 +-
 .../xbaya/messaging/EventDataRepository.java    |     4 +-
 .../airavata/xbaya/messaging/Monitor.java       |     4 +-
 .../xbaya/messaging/MonitorException.java       |     4 +-
 .../xbaya/messaging/NotificationHandler.java    |     4 +-
 .../airavata/xbaya/messaging/event/Event.java   |     4 +-
 .../xbaya/messaging/event/EventListener.java    |     4 +-
 .../xbaya/messaging/event/EventProducer.java    |     4 +-
 .../xbaya/modifier/WorkflowModifier.java        |     4 +-
 .../xbaya/registry/PasswordCallbackImpl.java    |    19 +
 .../xbaya/scufl/script/ScuflScript.java         |    19 +
 .../xbaya/test/util/WorkflowCreator.java        |    19 +
 .../org/apache/airavata/xbaya/ui/XBayaGUI.java  |     4 +-
 .../ui/actions/AbstractBrowserActionItem.java   |     4 +-
 .../ui/actions/registry/browser/AddAction.java  |     4 +-
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 .../ui/actions/registry/browser/CopyAction.java |     4 +-
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 .../actions/registry/browser/RefreshAction.java |     4 +-
 .../ui/actions/registry/browser/ViewAction.java |     4 +-
 .../airavata/xbaya/ui/dialogs/AboutWindow.java  |     4 +-
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 .../dialogs/amazon/AmazonEC2InvokerWindow.java  |     4 +-
 .../ui/dialogs/amazon/AmazonS3UtilsWindow.java  |     4 +-
 .../xbaya/ui/dialogs/amazon/BucketsLoader.java  |     4 +-
 .../dialogs/amazon/ChangeCredentialWindow.java  |     4 +-
 .../amazon/EC2InstancesManagementWindow.java    |     4 +-
 .../ui/dialogs/amazon/EC2LaunchWindow.java      |     4 +-
 .../ui/dialogs/amazon/InstancesLoader.java      |     4 +-
 .../xbaya/ui/dialogs/amazon/S3Downloader.java   |     4 +-
 .../xbaya/ui/dialogs/amazon/S3Uploader.java     |     4 +-
 .../ui/dialogs/component/URLRegistryWindow.java |     4 +-
 .../ui/dialogs/component/WebResigtryWindow.java |     4 +-
 .../amazon/InstanceConfigurationDialog.java     |     4 +-
 .../system/ConstantConfigurationDialog.java     |     4 +-
 .../DifferedInputConfigurationDialog.java       |     4 +-
 .../graph/system/DoWhileConfigrationDialog.java |     4 +-
 .../system/EndBlockConfigurationDialog.java     |     4 +-
 .../system/EndDoWhileConfigurationDialog.java   |     4 +-
 .../system/EndForEachConfigurationDialog.java   |     4 +-
 .../graph/system/EndifConfigurationDialog.java  |     4 +-
 .../system/ForEachConfigurationDialog.java      |     4 +-
 .../graph/system/IfConfigurationDialog.java     |     4 +-
 .../graph/system/InputConfigurationDialog.java  |     4 +-
 .../graph/system/MemoConfigurationDialog.java   |     4 +-
 .../graph/system/OutputConfigurationDialog.java |     4 +-
 .../system/ReceiveConfigurationDialog.java      |     4 +-
 .../ui/dialogs/graph/system/S3FileChooser.java  |     4 +-
 .../system/StreamSourceConfigurationDialog.java |     4 +-
 .../graph/ws/ServiceInteractionWindow.java      |     4 +-
 .../xbaya/ui/dialogs/graph/ws/WSNodeWindow.java |     4 +-
 .../monitor/MonitorConfigurationWindow.java     |     4 +-
 .../xbaya/ui/dialogs/monitor/MonitorWindow.java |     4 +-
 .../dialogs/registry/NewRegistryUserDialog.java |     4 +-
 .../ui/dialogs/registry/RegistryWindow.java     |     4 +-
 .../registry/browser/JCRBrowserDialog.java      |     4 +-
 .../workflow/ParameterPropertyWindow.java       |     4 +-
 .../dialogs/workflow/WorkflowImportWindow.java  |     4 +-
 .../workflow/WorkflowPropertyWindow.java        |     4 +-
 .../xbaya/ui/experiment/ExperimentMenu.java     |     4 +-
 .../ui/experiment/LaunchApplicationWindow.java  |     4 +-
 .../ui/experiment/RegistrySearchResult.java     |     4 +-
 .../RegistryWorkflowPublisherWindow.java        |     4 +-
 .../WorkflowInterpreterLaunchWindow.java        |     4 +-
 .../apache/airavata/xbaya/ui/graph/EdgeGUI.java |     4 +-
 .../airavata/xbaya/ui/graph/GraphCanvas.java    |     4 +-
 .../xbaya/ui/graph/GraphCanvasEvent.java        |     4 +-
 .../xbaya/ui/graph/GraphCanvasListener.java     |     4 +-
 .../airavata/xbaya/ui/graph/GraphGUI.java       |     4 +-
 .../airavata/xbaya/ui/graph/GraphPieceGUI.java  |     4 +-
 .../apache/airavata/xbaya/ui/graph/NodeGUI.java |     4 +-
 .../airavata/xbaya/ui/graph/Paintable.java      |     4 +-
 .../apache/airavata/xbaya/ui/graph/PortGUI.java |     4 +-
 .../xbaya/ui/graph/amazon/InstanceNodeGUI.java  |     4 +-
 .../graph/amazon/TerminateInstanceNodeGUI.java  |     4 +-
 .../graph/subworkflow/SubWorkflowNodeGUI.java   |     4 +-
 .../xbaya/ui/graph/system/BlockNodeGUI.java     |     4 +-
 .../ui/graph/system/ConfigurableNodeGUI.java    |     4 +-
 .../xbaya/ui/graph/system/ConstantNodeGUI.java  |     4 +-
 .../ui/graph/system/DifferedInputHandler.java   |     3 +-
 .../ui/graph/system/DifferedInputNodeGUI.java   |     3 +-
 .../xbaya/ui/graph/system/DoWhileNodeGUI.java   |     4 +-
 .../xbaya/ui/graph/system/EndBlockNodeGUI.java  |     4 +-
 .../ui/graph/system/EndDoWhileNodeGUI.java      |     4 +-
 .../ui/graph/system/EndForEachNodeGUI.java      |     4 +-
 .../xbaya/ui/graph/system/EndifNodeGUI.java     |     4 +-
 .../xbaya/ui/graph/system/ExitNodeGUI.java      |     4 +-
 .../xbaya/ui/graph/system/ForEachNodeGUI.java   |     4 +-
 .../xbaya/ui/graph/system/IfNodeGUI.java        |     4 +-
 .../xbaya/ui/graph/system/InputNodeGUI.java     |     4 +-
 .../xbaya/ui/graph/system/MemoNodeGUI.java      |     4 +-
 .../xbaya/ui/graph/system/OutputNodeGUI.java    |     4 +-
 .../xbaya/ui/graph/system/ReceiveNodeGUI.java   |     4 +-
 .../xbaya/ui/graph/system/S3InputNodeGUI.java   |     4 +-
 .../ui/graph/system/StreamSourceNodeGUI.java    |     4 +-
 .../airavata/xbaya/ui/graph/ws/WSNodeGUI.java   |     4 +-
 .../xbaya/ui/graph/ws/WorkflowNodeGUI.java      |     4 +-
 .../xbaya/ui/menues/AmazonEC2MenuItem.java      |     4 +-
 .../xbaya/ui/menues/ApplicationMenuItem.java    |     4 +-
 .../airavata/xbaya/ui/menues/EditMenuItem.java  |     4 +-
 .../airavata/xbaya/ui/menues/MenuIcons.java     |     4 +-
 .../xbaya/ui/menues/RegistryMenuItem.java       |     4 +-
 .../airavata/xbaya/ui/menues/RunMenuItem.java   |     4 +-
 .../airavata/xbaya/ui/menues/ViewMenuItem.java  |     4 +-
 .../airavata/xbaya/ui/menues/XBayaMenu.java     |     4 +-
 .../airavata/xbaya/ui/menues/XBayaMenuItem.java |     4 +-
 .../xbaya/ui/monitor/MonitorEventHandler.java   |     4 +-
 .../xbaya/ui/monitor/MonitorStarter.java        |     4 +-
 .../xbaya/ui/monitor/ResourcePaintable.java     |     4 +-
 .../airavata/xbaya/ui/utils/Cancelable.java     |     4 +-
 .../airavata/xbaya/ui/utils/DrawUtils.java      |     4 +-
 .../airavata/xbaya/ui/utils/ErrorMessages.java  |     4 +-
 .../xbaya/ui/views/ComponentViewer.java         |     4 +-
 .../xbaya/ui/views/JCRBrowserPanel.java         |    19 +
 .../airavata/xbaya/ui/views/MonitorPanel.java   |     4 +-
 .../xbaya/ui/views/ParameterPropertyPanel.java  |     4 +-
 .../airavata/xbaya/ui/views/PortViewer.java     |     4 +-
 .../airavata/xbaya/ui/widgets/GridPanel.java    |     4 +-
 .../airavata/xbaya/ui/widgets/ScrollPanel.java  |     4 +-
 .../xbaya/ui/widgets/TabLabelButton.java        |     4 +-
 .../xbaya/ui/widgets/TableRenderable.java       |     4 +-
 .../xbaya/ui/widgets/ToolbarButton.java         |     4 +-
 .../xbaya/ui/widgets/XBayaComboBox.java         |     4 +-
 .../xbaya/ui/widgets/XBayaComponent.java        |     4 +-
 .../airavata/xbaya/ui/widgets/XBayaLabel.java   |     3 +-
 .../xbaya/ui/widgets/XBayaLinkButton.java       |     4 +-
 .../airavata/xbaya/ui/widgets/XBayaList.java    |     4 +-
 .../xbaya/ui/widgets/XBayaTextArea.java         |     4 +-
 .../xbaya/ui/widgets/XBayaTextComponent.java    |     4 +-
 .../xbaya/ui/widgets/XBayaTextField.java        |     4 +-
 .../airavata/xbaya/ui/widgets/XBayaToolBar.java |     4 +-
 .../xbaya/ui/widgets/XbayaEnhancedList.java     |     4 +-
 .../xbaya/ui/widgets/amazon/S3Tree.java         |     4 +-
 .../xbaya/ui/widgets/amazon/S3TreeModel.java    |     4 +-
 .../ui/widgets/component/ComponentSelector.java |     4 +-
 .../component/ComponentSelectorEvent.java       |     4 +-
 .../component/ComponentSelectorListener.java    |     4 +-
 .../component/ComponentSourceTransferable.java  |     4 +-
 .../widgets/component/ComponentTreeModel.java   |     4 +-
 .../ui/widgets/component/ComponentTreeNode.java |     4 +-
 .../apache/airavata/xbaya/util/AmazonUtil.java  |     4 +-
 .../org/apache/airavata/xbaya/util/Data.java    |     4 +-
 .../apache/airavata/xbaya/util/GOConstants.java |     4 +-
 .../airavata/xbaya/util/GlobusOnlineUtils.java  |    19 +
 .../airavata/xbaya/util/RegistryConstants.java  |     4 +-
 .../airavata/xbaya/util/TransferFile.java       |     4 +-
 .../apache/airavata/xbaya/util/XBayaUtil.java   |     4 +-
 .../airavata/xbaya/workflow/WorkflowClient.java |     4 +-
 .../xbaya/workflow/WorkflowEngineException.java |     4 +-
 .../xbaya/workflow/proxy/ProxyWSDL.java         |     4 +-
 .../xbaya/workflow/proxy/WorkflowClient.java    |     4 +-
 .../xbaya/workflow/proxy/WorkflowContext.java   |     4 +-
 .../workflow/proxy/WorkflowProxyException.java  |     4 +-
 .../interpreter/ComplexForEachWorkflowTest.java |    19 +
 .../xbaya/interpreter/ComplexMathService.java   |     4 +-
 .../interpreter/ComplexMathWorkflowTest.java    |    19 +
 .../interpreter/CrossProductWorkflowTest.java   |    19 +
 .../airavata/xbaya/interpreter/EchoService.java |     3 +-
 .../xbaya/interpreter/ForEachWorkflowTest.java  |    19 +
 .../interpreter/LevenshteinDistanceService.java |     4 +-
 .../airavata/xbaya/interpreter/Listener.java    |    19 +
 .../xbaya/interpreter/NotificationSender.java   |    19 +
 .../xbaya/interpreter/RegistryServiceTest.java  |    19 +
 .../interpreter/SimpleForEachWorkflowTest.java  |    19 +
 .../interpreter/SimpleMathWorkflowTest.java     |    19 +
 .../xbaya/interpreter/WorkflowTest.java         |    19 +
 .../xbaya/interpreter/WorkflowTrackingTest.java |    19 +
 .../xbaya/interpreter/XBayaClientTest.java      |     5 +-
 .../interpreter/XBayaConsolidatedTestSuite.java |    19 +
 .../xbaya/interpreter/utils/ConfigKeys.java     |     5 +-
 .../xbaya/interpreter/utils/TestUtilServer.java |    19 +
 .../interpreter/utils/WorkflowTestUtils.java    |    19 +
 pom.xml                                         |   102 +-
 sandbox/amqpwstunnel/python/amqpwstunnel.py     |    20 +
 sandbox/amqpwstunnel/wstest.html                |    21 +
 sandbox/job-status-rest-server/api_test.py      |    20 +
 sandbox/job-status-rest-server/app.py           |    20 +
 .../example/logfile_checker/generate_logs.sh    |    20 +
 .../example/logfile_checker/log_consumer.py     |    20 +
 .../example/logfile_checker/log_streamer.py     |    20 +
 .../simstream/example/logfile_checker/test.txt  |    20 +
 .../example/mem_streamer/memory_consumption.py  |    20 +
 .../example/mem_streamer/memory_streamer.py     |    20 +
 .../application/alanine_dipeptide.py            |    20 +
 .../example/openmm_example/openmm_consumer.py   |    20 +
 .../openmm_example/openmm_log_consumer.py       |    20 +
 .../openmm_example/openmm_rmsd_consumer.py      |    20 +
 .../example/openmm_example/openmm_streamer.py   |    20 +
 .../simstream/example/openmm_example/test.txt   |    20 +
 sandbox/simstream/setup.py                      |    20 +
 sandbox/simstream/simstream/__init__.py         |    20 +
 sandbox/simstream/simstream/datacollector.py    |    20 +
 sandbox/simstream/simstream/datareporter.py     |    20 +
 sandbox/simstream/simstream/eventhandler.py     |    20 +
 sandbox/simstream/simstream/eventmonitor.py     |    20 +
 .../simstream/simstream/pikaasyncconsumer.py    |    20 +
 sandbox/simstream/simstream/pikaproducer.py     |    20 +
 sandbox/simstream/simstream/simstream.py        |    20 +
 .../airavata-apis/airavata_api.thrift           |    42 +-
 .../airavata-apis/airavata_errors.thrift        |     9 +
 .../airavata-apis/db_event_model.thrift         |    81 +
 .../airavata-apis/messaging_events.thrift       |     3 +-
 .../component-cpis/generate-cpi-stubs.sh        |    32 +-
 .../component-cpis/registry-api.thrift          |    20 +-
 .../component-cpis/user-profile-cpi.thrift      |     2 +-
 .../data-models/airavata_data_models.thrift     |     6 +-
 .../application_deployment_model.thrift         |     3 +-
 .../replica_catalog_models.thrift               |    31 +-
 .../compute_resource_model.thrift               |     6 +-
 .../user_resource_profile_model.thrift          |     2 +-
 .../group_manager_model.thrift                  |    48 -
 .../user-group-models/user_profile_model.thrift |   185 -
 .../group_manager_model.thrift                  |    48 +
 .../tenant_profile_model.thrift                 |    58 +
 .../user_profile_model.thrift                   |   196 +
 .../generate-thrift-stubs.sh                    |    42 +-
 .../service-cpis/generate-service-cpi-stubs.sh  |   181 +
 .../iam-admin-services-cpi.thrift               |    81 +
 .../iam_admin_services_cpi_errors.thrift        |    32 +
 .../profile-service/profile-service-cpi.thrift  |    34 +
 .../profile-tenant/profile-tenant-cpi.thrift    |    70 +
 .../profile_tenant_cpi_errors.thrift            |    32 +
 .../profile-user/profile-user-cpi.thrift        |    74 +
 .../profile-user/profile_user_cpi_errors.thrift |    32 +
 tools/gsissh-cli-tools/README.txt               |    20 +
 tools/gsissh-cli-tools/pom.xml                  |    29 +-
 .../ssh/cli/SSHApiClientWithMyProxyAuth.java    |     4 +-
 tools/phoebus-integration/pom.xml               |    26 +-
 .../impl/PhoebusGridConfigurationHandler.java   |     4 +-
 .../airavata/core/gfac/utils/PhoebusUtils.java  |     4 +-
 tools/pom.xml                                   |    26 +-
 tools/rabbitmq-download-start.sh                |    20 +
 1792 files changed, 137341 insertions(+), 66743 deletions(-)
----------------------------------------------------------------------



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