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From sma...@apache.org
Subject [27/27] airavata git commit: Updating license headers using license-maven-plugin
Date Tue, 04 Apr 2017 12:01:28 GMT
Updating license headers using license-maven-plugin


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/d82842dd
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/d82842dd
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/d82842dd

Branch: refs/heads/master
Commit: d82842ddcf8ae3a57e74db6fb48e872da8df0a27
Parents: 71d67f1
Author: Suresh Marru <smarru@apache.org>
Authored: Tue Apr 4 07:59:57 2017 -0400
Committer: Suresh Marru <smarru@apache.org>
Committed: Tue Apr 4 08:00:25 2017 -0400

----------------------------------------------------------------------
 airavata-api/airavata-api-server/pom.xml        | 26 +++++++---
 .../airavata/api/server/AiravataAPIServer.java  |  4 +-
 .../api/server/AiravataDerbyServer.java         |  4 +-
 .../server/handler/AiravataServerHandler.java   |  4 +-
 .../AiravataExperimentStatusUpdator.java        |  4 +-
 .../listener/ExperimentStatusChangedEvent.java  | 19 ++++++++
 .../security/AiravataSecurityManager.java       |  3 +-
 .../DefaultAiravataSecurityManager.java         |  3 +-
 .../api/server/security/IdentityContext.java    |  4 +-
 .../airavata/api/server/security/Main.java      |  5 +-
 .../server/security/SecurityManagerFactory.java |  3 +-
 .../server/security/authzcache/AuthzCache.java  |  3 +-
 .../security/authzcache/AuthzCacheEntry.java    |  3 +-
 .../security/authzcache/AuthzCacheIndex.java    |  3 +-
 .../security/authzcache/AuthzCacheManager.java  |  3 +-
 .../authzcache/AuthzCacheManagerFactory.java    |  3 +-
 .../security/authzcache/AuthzCachedStatus.java  |  3 +-
 .../authzcache/DefaultAuthzCacheManager.java    |  3 +-
 .../security/interceptor/SecurityCheck.java     |  3 +-
 .../interceptor/SecurityInterceptor.java        |  3 +-
 .../security/interceptor/SecurityModule.java    |  3 +-
 .../security/oauth/DefaultOAuthClient.java      |  3 +-
 .../server/security/xacml/DefaultPAPClient.java |  3 +-
 .../server/security/xacml/DefaultXACMLPEP.java  |  3 +-
 .../airavata/api/server/util/Constants.java     |  4 +-
 .../api/server/util/ThriftClientPool.java       |  5 +-
 airavata-api/airavata-api-stubs/pom.xml         | 26 +++++++---
 .../java/org/apache/airavata/api/Airavata.java  | 28 ++++++-----
 .../airavata/api/airavata_apiConstants.java     | 28 ++++++-----
 .../api/client/AiravataClientFactory.java       |  4 +-
 .../airavata-cpp-sdk/pom.xml                    | 26 +++++++---
 .../src/main/assembly/bin-assembly.xml          | 29 ++++++++----
 .../airavata-php-sdk/pom.xml                    | 26 +++++++---
 .../src/main/assembly/bin-assembly.xml          | 29 ++++++++----
 .../airavata-python-sdk/pom.xml                 | 26 +++++++---
 .../src/main/assembly/bin-assembly.xml          | 29 ++++++++----
 .../java-client-samples/pom.xml                 | 26 +++++++---
 .../client/samples/CancelExperiments.java       |  4 +-
 .../client/samples/CreateLaunchBES.java         |  3 +-
 .../client/samples/CreateLaunchExperiment.java  |  4 +-
 .../samples/CreateLaunchExperimentUS3.java      |  2 +-
 .../client/samples/ReplicaCatalogSample.java    |  5 +-
 .../client/samples/SampleEchoExperiment.java    |  4 +-
 .../client/OAuthAppRegisteringClient.java       |  3 +-
 .../client/OAuthTokenRetrievalClient.java       |  3 +-
 .../client/secure/client/Properties.java        |  3 +-
 .../client/secure/client/SecureClient.java      |  3 +-
 .../tools/RegisterOGCEUS3Application.java       |  6 +--
 .../tools/RegisterSampleApplications.java       |  5 +-
 .../tools/RegisterSampleApplicationsUtils.java  | 19 ++++++++
 .../client/tools/RegisterUS3Application.java    |  6 +--
 airavata-api/airavata-client-sdks/pom.xml       | 26 +++++++---
 airavata-api/airavata-data-models/pom.xml       | 26 +++++++---
 .../apache/airavata/model/ComponentState.java   | 28 ++++++-----
 .../apache/airavata/model/ComponentStatus.java  | 28 ++++++-----
 .../org/apache/airavata/model/EdgeModel.java    | 28 ++++++-----
 .../org/apache/airavata/model/NodeModel.java    | 28 ++++++-----
 .../org/apache/airavata/model/PortModel.java    | 28 ++++++-----
 .../apache/airavata/model/WorkflowModel.java    | 28 ++++++-----
 .../apache/airavata/model/WorkflowState.java    | 28 ++++++-----
 .../apache/airavata/model/WorkflowStatus.java   | 28 ++++++-----
 .../ApplicationDeploymentDescription.java       | 28 ++++++-----
 .../appdeployment/ApplicationModule.java        | 28 ++++++-----
 .../appcatalog/appdeployment/CommandObject.java | 28 ++++++-----
 .../appcatalog/appdeployment/SetEnvPaths.java   | 28 ++++++-----
 .../application_deployment_modelConstants.java  | 28 ++++++-----
 .../ApplicationInterfaceDescription.java        | 28 ++++++-----
 .../application_interface_modelConstants.java   | 28 ++++++-----
 .../appcatalog/computeresource/BatchQueue.java  | 28 ++++++-----
 .../computeresource/CloudJobSubmission.java     | 28 ++++++-----
 .../ComputeResourceDescription.java             | 28 ++++++-----
 .../appcatalog/computeresource/DMType.java      | 28 ++++++-----
 .../appcatalog/computeresource/FileSystems.java | 28 ++++++-----
 .../computeresource/GlobusJobSubmission.java    | 28 ++++++-----
 .../computeresource/JobManagerCommand.java      | 28 ++++++-----
 .../computeresource/JobSubmissionInterface.java | 28 ++++++-----
 .../computeresource/JobSubmissionProtocol.java  | 28 ++++++-----
 .../computeresource/LOCALSubmission.java        | 28 ++++++-----
 .../appcatalog/computeresource/MonitorMode.java | 28 ++++++-----
 .../computeresource/ProviderName.java           | 28 ++++++-----
 .../computeresource/ResourceJobManager.java     | 28 ++++++-----
 .../computeresource/ResourceJobManagerType.java | 28 ++++++-----
 .../computeresource/SSHJobSubmission.java       | 28 ++++++-----
 .../computeresource/UnicoreJobSubmission.java   | 28 ++++++-----
 .../compute_resource_modelConstants.java        | 28 ++++++-----
 .../ComputeResourcePreference.java              | 28 ++++++-----
 .../gatewayprofile/DataStoragePreference.java   | 28 ++++++-----
 .../gatewayprofile/GatewayResourceProfile.java  | 28 ++++++-----
 .../gatewayprofile/StoragePreference.java       | 28 ++++++-----
 .../StorageResourceDescription.java             | 28 ++++++-----
 .../UserComputeResourcePreference.java          | 28 ++++++-----
 .../UserResourceProfile.java                    | 28 ++++++-----
 .../UserStoragePreference.java                  | 28 ++++++-----
 .../airavata/model/application/io/DataType.java | 28 ++++++-----
 .../application/io/InputDataObjectType.java     | 28 ++++++-----
 .../application/io/OutputDataObjectType.java    | 28 ++++++-----
 .../airavata/model/commons/ErrorModel.java      | 28 ++++++-----
 .../model/commons/ValidationResults.java        | 28 ++++++-----
 .../airavata/model/commons/ValidatorResult.java | 28 ++++++-----
 .../commons/airavata_commonsConstants.java      | 28 ++++++-----
 .../credential/store/CertificateCredential.java | 28 ++++++-----
 .../model/credential/store/CommunityUser.java   | 28 ++++++-----
 .../credential/store/CredentialOwnerType.java   | 28 ++++++-----
 .../credential/store/CredentialSummary.java     | 28 ++++++-----
 .../credential/store/PasswordCredential.java    | 28 ++++++-----
 .../model/credential/store/SSHCredential.java   | 28 ++++++-----
 .../credential/store/SSHCredentialSummary.java  | 28 ++++++-----
 .../model/credential/store/SummaryType.java     | 28 ++++++-----
 .../credential_store_data_modelsConstants.java  | 28 ++++++-----
 .../airavata/model/data/movement/DMType.java    | 28 ++++++-----
 .../data/movement/DataMovementInterface.java    | 28 ++++++-----
 .../data/movement/DataMovementProtocol.java     | 28 ++++++-----
 .../data/movement/GridFTPDataMovement.java      | 28 ++++++-----
 .../model/data/movement/LOCALDataMovement.java  | 28 ++++++-----
 .../model/data/movement/SCPDataMovement.java    | 28 ++++++-----
 .../model/data/movement/SecurityProtocol.java   | 28 ++++++-----
 .../data/movement/UnicoreDataMovement.java      | 28 ++++++-----
 .../model/data/replica/DataProductModel.java    | 28 ++++++-----
 .../model/data/replica/DataProductType.java     | 28 ++++++-----
 .../data/replica/DataReplicaLocationModel.java  | 28 ++++++-----
 .../data/replica/ReplicaLocationCategory.java   | 28 ++++++-----
 .../data/replica/ReplicaPersistentType.java     | 28 ++++++-----
 .../model/error/AiravataClientException.java    | 28 ++++++-----
 .../airavata/model/error/AiravataErrorType.java | 28 ++++++-----
 .../model/error/AiravataSystemException.java    | 28 ++++++-----
 .../model/error/AuthenticationException.java    | 28 ++++++-----
 .../model/error/AuthorizationException.java     | 28 ++++++-----
 .../error/ExperimentNotFoundException.java      | 28 ++++++-----
 .../model/error/InvalidRequestException.java    | 28 ++++++-----
 .../model/error/LaunchValidationException.java  | 28 ++++++-----
 .../model/error/ProjectNotFoundException.java   | 28 ++++++-----
 .../airavata/model/error/TimedOutException.java | 28 ++++++-----
 .../airavata/model/error/ValidationResults.java | 28 ++++++-----
 .../airavata/model/error/ValidatorResult.java   | 28 ++++++-----
 .../model/experiment/ExperimentModel.java       | 28 ++++++-----
 .../experiment/ExperimentSearchFields.java      | 28 ++++++-----
 .../model/experiment/ExperimentStatistics.java  | 28 ++++++-----
 .../experiment/ExperimentSummaryModel.java      | 28 ++++++-----
 .../model/experiment/ExperimentType.java        | 28 ++++++-----
 .../model/experiment/ProjectSearchFields.java   | 28 ++++++-----
 .../experiment/UserConfigurationDataModel.java  | 28 ++++++-----
 .../apache/airavata/model/group/GroupModel.java | 28 ++++++-----
 .../model/group/ResourcePermissionType.java     | 28 ++++++-----
 .../airavata/model/group/ResourceType.java      | 28 ++++++-----
 .../org/apache/airavata/model/job/JobModel.java | 28 ++++++-----
 .../event/ExperimentStatusChangeEvent.java      | 28 ++++++-----
 .../messaging/event/ExperimentSubmitEvent.java  | 28 ++++++-----
 .../model/messaging/event/JobIdentifier.java    | 28 ++++++-----
 .../messaging/event/JobStatusChangeEvent.java   | 28 ++++++-----
 .../event/JobStatusChangeRequestEvent.java      | 28 ++++++-----
 .../airavata/model/messaging/event/Message.java | 28 ++++++-----
 .../model/messaging/event/MessageLevel.java     | 28 ++++++-----
 .../model/messaging/event/MessageType.java      | 28 ++++++-----
 .../messaging/event/ProcessIdentifier.java      | 28 ++++++-----
 .../event/ProcessStatusChangeEvent.java         | 28 ++++++-----
 .../event/ProcessStatusChangeRequestEvent.java  | 28 ++++++-----
 .../messaging/event/ProcessSubmitEvent.java     | 28 ++++++-----
 .../messaging/event/ProcessTerminateEvent.java  | 28 ++++++-----
 .../model/messaging/event/TaskIdentifier.java   | 28 ++++++-----
 .../messaging/event/TaskOutputChangeEvent.java  | 28 ++++++-----
 .../messaging/event/TaskStatusChangeEvent.java  | 28 ++++++-----
 .../event/TaskStatusChangeRequestEvent.java     | 28 ++++++-----
 .../model/messaging/event/TaskSubmitEvent.java  | 28 ++++++-----
 .../messaging/event/TaskTerminateEvent.java     | 28 ++++++-----
 .../event/messaging_eventsConstants.java        | 28 ++++++-----
 .../parallelism/ApplicationParallelismType.java | 28 ++++++-----
 .../airavata/model/process/ProcessModel.java    | 28 ++++++-----
 .../ComputationalResourceSchedulingModel.java   | 28 ++++++-----
 .../airavata/model/security/AuthzToken.java     | 28 ++++++-----
 .../airavata/model/status/ExperimentState.java  | 28 ++++++-----
 .../airavata/model/status/ExperimentStatus.java | 28 ++++++-----
 .../apache/airavata/model/status/JobState.java  | 28 ++++++-----
 .../apache/airavata/model/status/JobStatus.java | 28 ++++++-----
 .../airavata/model/status/ProcessState.java     | 28 ++++++-----
 .../airavata/model/status/ProcessStatus.java    | 28 ++++++-----
 .../airavata/model/status/QueueStatusModel.java | 28 ++++++-----
 .../apache/airavata/model/status/TaskState.java | 28 ++++++-----
 .../airavata/model/status/TaskStatus.java       | 28 ++++++-----
 .../airavata/model/task/DataStageType.java      | 28 ++++++-----
 .../model/task/DataStagingTaskModel.java        | 28 ++++++-----
 .../model/task/EnvironmentSetupTaskModel.java   | 28 ++++++-----
 .../model/task/JobSubmissionTaskModel.java      | 28 ++++++-----
 .../airavata/model/task/MonitorTaskModel.java   | 28 ++++++-----
 .../apache/airavata/model/task/TaskModel.java   | 28 ++++++-----
 .../apache/airavata/model/task/TaskTypes.java   | 28 ++++++-----
 .../airavata/model/user/NSFDemographics.java    | 28 ++++++-----
 .../org/apache/airavata/model/user/Status.java  | 28 ++++++-----
 .../airavata/model/user/USCitizenship.java      | 28 ++++++-----
 .../apache/airavata/model/user/UserProfile.java | 28 ++++++-----
 .../apache/airavata/model/user/disability.java  | 28 ++++++-----
 .../apache/airavata/model/user/ethnicity.java   | 28 ++++++-----
 .../org/apache/airavata/model/user/race.java    | 28 ++++++-----
 .../model/user/user_profile_modelConstants.java | 28 ++++++-----
 .../model/workflow_data_modelConstants.java     | 28 ++++++-----
 .../airavata/model/workspace/Gateway.java       | 28 ++++++-----
 .../model/workspace/GatewayApprovalStatus.java  | 28 ++++++-----
 .../apache/airavata/model/workspace/Group.java  | 28 ++++++-----
 .../airavata/model/workspace/Notification.java  | 28 ++++++-----
 .../model/workspace/NotificationPriority.java   | 28 ++++++-----
 .../airavata/model/workspace/Project.java       | 28 ++++++-----
 .../apache/airavata/model/workspace/User.java   | 28 ++++++-----
 airavata-api/airavata-model-utils/pom.xml       | 26 +++++++---
 .../airavata/model/util/AppDeploymentUtil.java  |  4 +-
 .../airavata/model/util/AppInterfaceUtil.java   |  4 +-
 .../model/util/ComputeResourceUtil.java         |  4 +-
 .../airavata/model/util/ExecutionType.java      |  4 +-
 .../model/util/ExperimentModelUtil.java         |  4 +-
 .../airavata/model/util/ProjectModelUtil.java   |  2 +-
 airavata-api/pom.xml                            | 26 +++++++---
 dev-tools/ansible/airavata.yml                  | 20 ++++++++
 dev-tools/ansible/dev_airavata_deploy.yml       | 20 ++++++++
 dev-tools/ansible/dev_pga_deploy.yml            | 20 ++++++++
 .../inventories/develop/group_vars/all.yml      | 20 ++++++++
 .../develop/group_vars/dev-airavata.yml         | 20 ++++++++
 .../inventories/develop/group_vars/dev-pga.yml  | 20 ++++++++
 .../geogateway-dev/group_vars/pga/vars.yml      | 20 ++++++++
 .../geogateway-dev/group_vars/pga/vault.yml     | 20 ++++++++
 .../scigap/production/group_vars/all/vars.yml   | 20 ++++++++
 .../scigap/production/group_vars/all/vault.yml  | 20 ++++++++
 .../testing-0.17-scigap/group_vars/all/vars.yml | 20 ++++++++
 .../group_vars/all/vault.yml                    | 20 ++++++++
 .../testing-0.17-scigap/group_vars/pga/vars.yml | 20 ++++++++
 .../group_vars/pga/vault.yml                    | 20 ++++++++
 .../group_vars/all/vars.yml                     | 20 ++++++++
 .../group_vars/all/vault.yml                    | 20 ++++++++
 .../group_vars/pga/vars.yml                     | 20 ++++++++
 .../group_vars/pga/vault.yml                    | 20 ++++++++
 .../testing-0.17/group_vars/all/vars.yml        | 20 ++++++++
 .../testing-0.17/group_vars/all/vault.yml       | 20 ++++++++
 .../testing-0.17/group_vars/pga/vars.yml        | 20 ++++++++
 .../testing-0.17/group_vars/pga/vault.yml       | 20 ++++++++
 dev-tools/ansible/local_airavata_deploy.yml     | 20 ++++++++
 dev-tools/ansible/pga.yml                       | 20 ++++++++
 .../ansible/roles/airavata_build/tasks/main.yml | 20 ++++++++
 .../roles/airavata_deploy/defaults/main.yml     | 20 ++++++++
 .../roles/airavata_deploy/handlers/main.yml     | 20 ++++++++
 .../roles/airavata_deploy/tasks/main.yml        | 20 ++++++++
 .../ansible/roles/api-orch/defaults/main.yml    | 20 ++++++++
 .../ansible/roles/api-orch/handlers/main.yml    | 20 ++++++++
 dev-tools/ansible/roles/api-orch/tasks/main.yml | 20 ++++++++
 .../ansible/roles/common/defaults/main.yml      | 20 ++++++++
 dev-tools/ansible/roles/common/tasks/main.yml   | 20 ++++++++
 dev-tools/ansible/roles/common/vars/main.yml    | 20 ++++++++
 .../ansible/roles/database/defaults/main.yml    | 20 ++++++++
 .../ansible/roles/database/handlers/main.yml    | 20 ++++++++
 dev-tools/ansible/roles/database/tasks/main.yml | 20 ++++++++
 .../roles/database/tasks/secure_install.yml     | 20 ++++++++
 dev-tools/ansible/roles/database/vars/main.yml  | 20 ++++++++
 .../ansible/roles/env_setup/tasks/main.yml      | 20 ++++++++
 .../ansible/roles/env_setup/tasks/redhat.yml    | 20 ++++++++
 dev-tools/ansible/roles/gfac/handlers/main.yml  | 20 ++++++++
 dev-tools/ansible/roles/gfac/tasks/main.yml     | 20 ++++++++
 dev-tools/ansible/roles/java/tasks/main.yml     | 20 ++++++++
 dev-tools/ansible/roles/java/vars/main.yml      | 20 ++++++++
 dev-tools/ansible/roles/pga/defaults/main.yml   | 20 ++++++++
 dev-tools/ansible/roles/pga/handlers/main.yml   | 20 ++++++++
 .../roles/pga/tasks/install_deps_CentOS_7.yml   | 20 ++++++++
 .../roles/pga/tasks/install_deps_Ubuntu_14.yml  | 20 ++++++++
 .../roles/pga/tasks/install_deps_Ubuntu_16.yml  | 20 ++++++++
 dev-tools/ansible/roles/pga/tasks/main.yml      | 20 ++++++++
 .../ansible/roles/pga_deploy/handlers/main.yml  | 20 ++++++++
 .../ansible/roles/pga_deploy/tasks/main.yml     | 20 ++++++++
 .../ansible/roles/rabbitmq/handlers/main.yml    | 20 ++++++++
 dev-tools/ansible/roles/rabbitmq/tasks/main.yml | 20 ++++++++
 dev-tools/ansible/roles/rabbitmq/vars/main.yml  | 20 ++++++++
 dev-tools/ansible/roles/registry/tasks/main.yml | 20 ++++++++
 dev-tools/ansible/roles/wso2_is/tasks/main.yml  | 20 ++++++++
 dev-tools/ansible/roles/wso2_is/vars/main.yml   | 20 ++++++++
 .../ansible/roles/zookeeper/handlers/main.yml   | 20 ++++++++
 .../ansible/roles/zookeeper/tasks/main.yml      | 20 ++++++++
 dev-tools/ansible/roles/zookeeper/vars/main.yml | 20 ++++++++
 dev-tools/ansible/site.yml                      | 20 ++++++++
 modules/cluster-monitoring/pom.xml              | 21 ++++++++
 .../monitoring/ClusterStatusMonitorJob.java     |  5 +-
 .../ClusterStatusMonitorJobScheduler.java       |  5 +-
 modules/commons/pom.xml                         | 26 +++++++---
 .../airavata/common/utils/BuildConstant.java    |  4 +-
 .../airavata/common/context/RequestContext.java |  4 +-
 .../common/context/WorkflowContext.java         |  4 +-
 .../AiravataConfigurationException.java         |  4 +-
 .../common/exception/AiravataException.java     |  4 +-
 .../exception/AiravataStartupException.java     |  4 +-
 .../exception/ApplicationSettingsException.java |  4 +-
 .../airavata/common/logging/Exception.java      |  3 +-
 .../airavata/common/logging/LogEntry.java       |  3 +-
 .../airavata/common/logging/MDCConstants.java   |  3 +-
 .../apache/airavata/common/logging/MDCUtil.java | 19 ++++++++
 .../airavata/common/logging/ServerId.java       |  3 +-
 .../common/logging/kafka/KafkaAppender.java     |  3 +-
 .../airavata/common/utils/AiravataJobState.java |  5 +-
 .../airavata/common/utils/AiravataUtils.java    |  4 +-
 .../airavata/common/utils/AiravataZKUtils.java  |  5 +-
 .../common/utils/ApplicationSettings.java       |  4 +-
 .../airavata/common/utils/AwsMetadata.java      |  3 +-
 .../airavata/common/utils/BrowserLauncher.java  |  4 +-
 .../airavata/common/utils/ClientSettings.java   |  4 +-
 .../apache/airavata/common/utils/Constants.java |  4 +-
 .../apache/airavata/common/utils/DBUtil.java    |  4 +-
 .../common/utils/DatabaseTestCases.java         |  4 +-
 .../utils/DefaultKeyStorePasswordCallback.java  |  4 +-
 .../apache/airavata/common/utils/DerbyUtil.java |  4 +-
 .../airavata/common/utils/ExecutionMode.java    |  4 +-
 .../apache/airavata/common/utils/IOUtil.java    |  4 +-
 .../apache/airavata/common/utils/IServer.java   |  4 +-
 .../apache/airavata/common/utils/JSONUtil.java  |  4 +-
 .../common/utils/KeyStorePasswordCallback.java  | 19 ++++++++
 .../common/utils/LocalEventPublisher.java       |  5 +-
 .../airavata/common/utils/NameValidator.java    |  4 +-
 .../org/apache/airavata/common/utils/Pair.java  |  4 +-
 .../airavata/common/utils/SecurityUtil.java     |  4 +-
 .../airavata/common/utils/ServerSettings.java   |  4 +-
 .../airavata/common/utils/ServiceUtils.java     | 19 ++++++++
 .../airavata/common/utils/StringUtil.java       |  4 +-
 .../apache/airavata/common/utils/SwingUtil.java |  4 +-
 .../airavata/common/utils/ThriftUtils.java      |  4 +-
 .../apache/airavata/common/utils/Version.java   |  4 +-
 .../airavata/common/utils/WSConstants.java      |  4 +-
 .../apache/airavata/common/utils/WSDLUtil.java  |  4 +-
 .../airavata/common/utils/ZkConstants.java      |  3 +-
 .../listener/AbstractActivityListener.java      |  4 +-
 .../listener/AbstractStateChangeRequest.java    |  4 +-
 .../common/utils/listener/PublisherMessage.java |  4 +-
 .../common/utils/ApplicationSettingsTest.java   |  4 +-
 .../airavata/common/utils/SecurityUtilTest.java |  4 +-
 modules/configuration/client/pom.xml            | 26 +++++++---
 modules/configuration/pom.xml                   | 26 +++++++---
 modules/configuration/server/pom.xml            | 26 +++++++---
 .../credential-store-service/pom.xml            | 29 ++++++++----
 .../credential/store/credential/AuditInfo.java  |  4 +-
 .../store/credential/CommunityUser.java         |  4 +-
 .../credential/store/credential/Credential.java |  4 +-
 .../store/credential/CredentialOwnerType.java   | 19 ++++++++
 .../impl/certificate/CertificateAuditInfo.java  |  6 +--
 .../impl/certificate/CertificateCredential.java |  4 +-
 .../impl/password/PasswordCredential.java       |  4 +-
 .../credential/impl/ssh/SSHCredential.java      |  4 +-
 .../impl/ssh/SSHCredentialGenerator.java        |  4 +-
 .../store/notifier/CredentialStoreNotifier.java | 19 ++++++++
 .../store/notifier/NotificationMessage.java     |  4 +-
 .../store/notifier/NotifierBootstrap.java       |  4 +-
 .../notifier/impl/EmailNotificationMessage.java |  4 +-
 .../store/notifier/impl/EmailNotifier.java      |  4 +-
 .../impl/EmailNotifierConfiguration.java        |  4 +-
 .../store/server/CredentialStoreServer.java     |  3 +-
 .../server/CredentialStoreServerHandler.java    |  3 +-
 .../store/servlet/CredentialBootstrapper.java   |  4 +-
 .../servlet/CredentialStoreCallbackServlet.java |  4 +-
 .../servlet/CredentialStoreStartServlet.java    |  4 +-
 .../store/store/CredentialReader.java           |  4 +-
 .../store/store/CredentialReaderFactory.java    |  4 +-
 .../store/store/CredentialStoreException.java   |  4 +-
 .../store/store/CredentialWriter.java           |  4 +-
 .../store/impl/CertificateCredentialWriter.java |  4 +-
 .../store/store/impl/CredentialReaderImpl.java  |  4 +-
 .../store/store/impl/SSHCredentialWriter.java   |  4 +-
 .../store/store/impl/db/CommunityUserDAO.java   |  4 +-
 .../store/store/impl/db/CredentialsDAO.java     |  4 +-
 .../store/store/impl/db/ParentDAO.java          |  4 +-
 .../store/store/impl/util/ConnectionPool.java   |  5 +-
 .../impl/util/CredentialStoreInitUtil.java      |  5 +-
 .../store/store/impl/util/DatabaseCreator.java  |  5 +-
 .../store/store/impl/util/JdbcStorage.java      |  5 +-
 .../store/util/ConfigurationReader.java         |  4 +-
 .../store/util/CredentialStoreConstants.java    |  4 +-
 .../credential/store/util/PrivateKeyStore.java  |  4 +-
 .../credential/store/util/TokenGenerator.java   |  4 +-
 .../airavata/credential/store/util/Utility.java |  4 +-
 .../cpi/SSHSummaryTest/SSHSummaryTest.java      | 19 ++++++++
 .../store/notifier/impl/EmailNotifierTest.java  |  4 +-
 .../store/impl/db/CommunityUserDAOTest.java     |  4 +-
 .../store/store/impl/db/CredentialsDAOTest.java |  4 +-
 .../store/store/impl/db/SSHCredentialTest.java  |  4 +-
 .../store/util/ConfigurationReaderTest.java     |  4 +-
 .../store/util/TokenGeneratorTest.java          |  4 +-
 .../credential-store-stubs/pom.xml              | 26 +++++++---
 .../client/CredentialStoreClientFactory.java    |  4 +-
 .../credential/store/client/TestSSLClient.java  |  3 +-
 .../store/cpi/CredentialStoreService.java       | 19 ++++++++
 .../cpi/credential_store_cpiConstants.java      | 19 ++++++++
 .../exception/CredentialStoreException.java     | 19 ++++++++
 modules/credential-store/pom.xml                | 26 +++++++---
 modules/distribution/pom.xml                    | 29 ++++++++----
 .../src/main/assembly/bin-assembly.xml          | 30 ++++++++----
 .../src/main/assembly/src-assembly.xml          | 37 ++++++++-------
 .../gfac-application-specific-handlers/pom.xml  | 31 ++++++++----
 .../gaussian/handler/GaussianHandler.java       | 19 ++++++++
 modules/gfac/gfac-bes/pom.xml                   | 29 ++++++++----
 .../gfac/bes/handlers/AbstractSMSHandler.java   | 19 ++++++++
 .../gfac/bes/handlers/SMSByteIOInHandler.java   | 19 ++++++++
 .../gfac/bes/handlers/SMSByteIOOutHandler.java  | 19 ++++++++
 .../gfac/bes/handlers/SMSDirectoryHandler.java  | 19 ++++++++
 .../gfac/bes/provider/impl/BESProvider.java     |  3 +-
 .../bes/security/UNICORESecurityContext.java    | 19 ++++++++
 .../gfac/bes/security/X509SecurityContext.java  |  5 +-
 .../airavata/gfac/bes/utils/ActivityInfo.java   | 19 ++++++++
 .../gfac/bes/utils/ApplicationProcessor.java    |  4 +-
 .../airavata/gfac/bes/utils/BESConstants.java   | 19 ++++++++
 .../gfac/bes/utils/DataTransferrer.java         |  4 +-
 .../airavata/gfac/bes/utils/FileDownloader.java |  4 +-
 .../gfac/bes/utils/FileTransferBase.java        |  4 +-
 .../airavata/gfac/bes/utils/FileUploader.java   |  4 +-
 .../airavata/gfac/bes/utils/JSDLGenerator.java  |  3 +-
 .../airavata/gfac/bes/utils/JSDLUtils.java      |  4 +-
 .../apache/airavata/gfac/bes/utils/Mode.java    |  4 +-
 .../airavata/gfac/bes/utils/MyProxyLogon.java   | 19 ++++++++
 .../airavata/gfac/bes/utils/OSRequirement.java  |  4 +-
 .../apache/airavata/gfac/bes/utils/OSType.java  |  4 +-
 .../gfac/bes/utils/ProcessorRequirement.java    |  6 +--
 .../airavata/gfac/bes/utils/RangeValueType.java |  4 +-
 .../gfac/bes/utils/ResourceProcessor.java       |  4 +-
 .../airavata/gfac/bes/utils/SPMDProcessor.java  |  4 +-
 .../airavata/gfac/bes/utils/SPMDVariations.java |  4 +-
 .../airavata/gfac/bes/utils/SecurityUtils.java  | 19 ++++++++
 .../airavata/gfac/bes/utils/StorageCreator.java |  4 +-
 .../gfac/bes/utils/UASDataStagingProcessor.java |  4 +-
 .../airavata/gfac/bes/utils/URIUtils.java       |  4 +-
 .../impl/JSDLGeneratorTestWithMyProxyAuth.java  |  4 +-
 modules/gfac/gfac-client/pom.xml                | 26 +++++++---
 .../airavata/gfac/client/GFACInstance.java      |  5 +-
 .../airavata/gfac/client/GFacClientFactory.java |  5 +-
 .../apache/airavata/gfac/cpi/GfacService.java   | 19 ++++++++
 .../airavata/gfac/cpi/gfac_cpiConstants.java    | 19 ++++++++
 modules/gfac/gfac-impl/pom.xml                  | 26 +++++++---
 .../java/com/jcraft/jsch/ExtendedSession.java   |  4 +-
 .../com/jcraft/jsch/GSISSHIdentityFile.java     |  4 +-
 .../jcraft/jsch/GSISSHIdentityRepository.java   |  4 +-
 .../java/com/jcraft/jsch/GSSContextX509.java    |  4 +-
 .../UserAuthGSSAPIWithMICGSSCredentials.java    |  4 +-
 .../apache/airavata/gfac/impl/AuroraUtils.java  |  3 +-
 .../airavata/gfac/impl/BESRemoteCluster.java    |  6 +--
 .../gfac/impl/DefaultHostScheduler.java         |  3 +-
 .../org/apache/airavata/gfac/impl/Factory.java  |  3 +-
 .../airavata/gfac/impl/GFacEngineImpl.java      |  6 +--
 .../apache/airavata/gfac/impl/GFacWorker.java   |  4 +-
 .../airavata/gfac/impl/HPCRemoteCluster.java    |  5 +-
 .../apache/airavata/gfac/impl/HTTPUtils.java    | 19 ++++++++
 .../airavata/gfac/impl/LocalCommandOutput.java  |  3 +-
 .../airavata/gfac/impl/LocalRemoteCluster.java  |  3 +-
 .../org/apache/airavata/gfac/impl/SSHUtils.java |  3 +-
 .../airavata/gfac/impl/StandardOutReader.java   |  5 +-
 .../job/AiravataCustomCommandOutputParser.java  |  6 +--
 .../gfac/impl/job/ForkJobConfiguration.java     |  6 +--
 .../gfac/impl/job/ForkOutputParser.java         |  6 +--
 .../apache/airavata/gfac/impl/job/JobUtil.java  |  3 +-
 .../gfac/impl/job/LSFJobConfiguration.java      |  5 +-
 .../airavata/gfac/impl/job/LSFOutputParser.java |  5 +-
 .../gfac/impl/job/PBSJobConfiguration.java      |  5 +-
 .../airavata/gfac/impl/job/PBSOutputParser.java |  5 +-
 .../gfac/impl/job/SlurmJobConfiguration.java    |  5 +-
 .../gfac/impl/job/SlurmOutputParser.java        |  5 +-
 .../gfac/impl/job/UGEJobConfiguration.java      |  5 +-
 .../airavata/gfac/impl/job/UGEOutputParser.java |  5 +-
 .../airavata/gfac/impl/task/ArchiveTask.java    |  3 +-
 .../gfac/impl/task/AuroraJobSubmissionTask.java |  3 +-
 .../gfac/impl/task/BESJobSubmissionTask.java    | 19 ++++++++
 .../airavata/gfac/impl/task/DataStageTask.java  |  3 +-
 .../gfac/impl/task/DataStreamingTask.java       |  6 +--
 .../impl/task/DefaultJobSubmissionTask.java     |  6 +--
 .../gfac/impl/task/EnvironmentSetupTask.java    |  3 +-
 .../gfac/impl/task/ForkJobSubmissionTask.java   |  6 +--
 .../gfac/impl/task/LocalJobSubmissionTask.java  |  6 +--
 .../gfac/impl/task/SCPDataStageTask.java        |  3 +-
 .../airavata/gfac/impl/task/TaskUtils.java      |  3 +-
 .../gfac/impl/task/utils/StreamData.java        |  6 +--
 .../gfac/impl/task/utils/bes/ActivityInfo.java  | 19 ++++++++
 .../task/utils/bes/ApplicationProcessor.java    |  4 +-
 .../gfac/impl/task/utils/bes/BESConstants.java  | 19 ++++++++
 .../impl/task/utils/bes/DataTransferrer.java    |  4 +-
 .../impl/task/utils/bes/FileDownloader.java     |  4 +-
 .../impl/task/utils/bes/FileTransferBase.java   |  4 +-
 .../gfac/impl/task/utils/bes/FileUploader.java  |  4 +-
 .../gfac/impl/task/utils/bes/JSDLGenerator.java |  3 +-
 .../gfac/impl/task/utils/bes/JSDLUtils.java     |  4 +-
 .../airavata/gfac/impl/task/utils/bes/Mode.java |  4 +-
 .../gfac/impl/task/utils/bes/MyProxyLogon.java  | 19 ++++++++
 .../gfac/impl/task/utils/bes/OSType.java        |  4 +-
 .../task/utils/bes/ProcessorRequirement.java    |  6 +--
 .../impl/task/utils/bes/RangeValueType.java     |  4 +-
 .../impl/task/utils/bes/ResourceProcessor.java  |  4 +-
 .../task/utils/bes/ResourceRequirement.java     |  4 +-
 .../impl/task/utils/bes/SPMDVariations.java     |  4 +-
 .../gfac/impl/task/utils/bes/SecurityUtils.java | 19 ++++++++
 .../impl/task/utils/bes/StorageCreator.java     |  4 +-
 .../task/utils/bes/UASDataStagingProcessor.java |  4 +-
 .../task/utils/bes/UNICORESecurityContext.java  | 19 ++++++++
 .../gfac/impl/task/utils/bes/URIUtils.java      |  4 +-
 .../task/utils/bes/X509SecurityContext.java     |  5 +-
 .../impl/watcher/CancelRequestWatcherImpl.java  |  3 +-
 .../watcher/RedeliveryRequestWatcherImpl.java   |  3 +-
 .../handler/LocalDirectorySetupHandler.java     | 19 ++++++++
 .../gfac/local/handler/LocalInputHandler.java   | 19 ++++++++
 .../gfac/local/provider/impl/LocalProvider.java | 19 ++++++++
 .../local/utils/InputStreamToFileWriter.java    |  5 +-
 .../airavata/gfac/local/utils/InputUtils.java   |  5 +-
 .../gfac/local/utils/LocalProviderUtil.java     | 19 ++++++++
 .../gfac/monitor/cloud/AuroraJobMonitor.java    |  3 +-
 .../gfac/monitor/email/EmailBasedMonitor.java   |  5 +-
 .../email/parser/AiravataCustomMailParser.java  |  5 +-
 .../monitor/email/parser/LSFEmailParser.java    |  5 +-
 .../monitor/email/parser/PBSEmailParser.java    |  5 +-
 .../monitor/email/parser/SLURMEmailParser.java  |  5 +-
 .../monitor/email/parser/UGEEmailParser.java    |  5 +-
 .../exception/AiravataMonitorException.java     |  5 +-
 .../gfac/ssh/context/SSHAuthWrapper.java        |  5 +-
 .../gfac/ssh/security/SSHSecurityContext.java   |  3 +-
 .../gfac/ssh/security/TokenizedSSHAuthInfo.java |  5 +-
 .../services/impl/BigRed2TestWithSSHAuth.java   | 19 ++++++++
 .../gfac/services/impl/CredentialStoreTest.java | 19 ++++++++
 .../impl/GSISSHProviderTestWithMyProxyAuth.java | 19 ++++++++
 .../gfac/services/impl/LocalProviderTest.java   | 19 ++++++++
 .../impl/SSHProviderTestWithSSHAuth.java        | 19 ++++++++
 .../GSISecurityContextTestWithMyProxyAuth.java  | 19 ++++++++
 .../email/parser/PBSEmailParserTest.java        | 19 ++++++++
 .../gfac/ssh/config/ConfigReaderTest.java       | 19 ++++++++
 .../impl/DefaultSSHApiTestWithMyProxyAuth.java  | 19 ++++++++
 .../gfac/ssh/impl/VanilaTestWithSSHAuth.java    | 19 ++++++++
 .../apache/airavata/job/AMQPMonitorTest.java    | 19 ++++++++
 .../job/QstatMonitorTestWithMyProxyAuth.java    | 19 ++++++++
 modules/gfac/gfac-service/pom.xml               | 26 +++++++---
 .../apache/airavata/gfac/server/GfacServer.java |  5 +-
 .../airavata/gfac/server/GfacServerHandler.java |  5 +-
 .../gfac/client/GfacClientFactoryTest.java      |  6 +--
 .../airavata/gfac/client/util/Initialize.java   |  4 +-
 modules/gfac/pom.xml                            | 26 +++++++---
 modules/integration-tests/pom.xml               | 26 +++++++---
 .../org/apache/airavata/integration/Man.java    |  4 +-
 .../integration/AbstractIntegrationTest.java    |  4 +-
 .../apache/airavata/integration/BaseCaseIT.java |  4 +-
 .../airavata/integration/DataRetrievalIT.java   |  4 +-
 .../airavata/integration/ForEachCaseIT.java     |  4 +-
 .../apache/airavata/integration/OsUtils.java    |  4 +-
 .../integration/PasswordCallbackImpl.java       | 19 ++++++++
 .../airavata/integration/SimpleEchoIT.java      |  4 +-
 .../SingleAppIntegrationTestBase.java           |  3 +-
 .../WorkflowIntegrationTestBase.java            |  4 +-
 .../integration/WorkflowSamplesCaseIT.java      |  4 +-
 .../integration/tools/DocumentCreatorNew.java   |  5 +-
 .../integration/tools/DocumentCreatorUtils.java |  4 +-
 .../integration-tests/src/test/java/suite.xml   | 30 ++++++++----
 modules/messaging/client/pom.xml                | 26 +++++++---
 .../messaging/client/RabbitMQListener.java      |  4 +-
 .../airavata/messaging/client/TestReader.java   |  3 +-
 modules/messaging/core/pom.xml                  | 26 +++++++---
 .../airavata/messaging/core/MessageContext.java |  4 +-
 .../airavata/messaging/core/MessageHandler.java |  4 +-
 .../messaging/core/MessagingConstants.java      |  4 +-
 .../messaging/core/MessagingFactory.java        |  3 +-
 .../airavata/messaging/core/Publisher.java      |  4 +-
 .../messaging/core/PublisherFactory.java        | 19 ++++++++
 .../messaging/core/RabbitMQProperties.java      |  3 +-
 .../airavata/messaging/core/Subscriber.java     |  4 +-
 .../airavata/messaging/core/TestClient.java     |  4 +-
 .../apache/airavata/messaging/core/Type.java    |  3 +-
 .../messaging/core/impl/ExperimentConsumer.java |  3 +-
 .../messaging/core/impl/ProcessConsumer.java    |  3 +-
 .../impl/RabbitMQProcessLaunchConsumer.java     | 19 ++++++++
 .../impl/RabbitMQProcessLaunchPublisher.java    | 19 ++++++++
 .../messaging/core/impl/RabbitMQProducer.java   | 19 ++++++++
 .../messaging/core/impl/RabbitMQPublisher.java  |  3 +-
 .../core/impl/RabbitMQStatusPublisher.java      | 19 ++++++++
 .../core/impl/RabbitMQStatusSubscriber.java     | 19 ++++++++
 .../messaging/core/impl/RabbitMQSubscriber.java |  3 +-
 .../messaging/core/impl/StatusConsumer.java     |  3 +-
 .../messaging/core/stats/CountWriterTask.java   |  3 +-
 .../messaging/core/stats/LatencyWriterTask.java |  3 +-
 .../messaging/core/stats/StatCounter.java       |  3 +-
 modules/messaging/pom.xml                       | 26 +++++++---
 modules/monitoring/pom.xml                      | 31 ++++++++----
 .../org/apache/airavata/monitoring/Main.java    |  3 +-
 .../airavata/monitoring/MessageExtract.java     |  3 +-
 .../org/apache/airavata/monitoring/Util.java    |  3 +-
 .../monitoring/consumer/StatusConsumer.java     |  3 +-
 .../monitoring/consumer/StatusReceiver.java     |  3 +-
 .../monitoring/mailbox/GmailSMTPMailBox.java    |  3 +-
 .../airavata/monitoring/mailbox/MailBox.java    |  3 +-
 .../airavata/monitoring/mailbox/MailConfig.java |  3 +-
 .../producer/RabbitMQEmailPublisher.java        |  3 +-
 .../monitoring/simulator/FetchPublish.java      |  3 +-
 .../monitoring/simulator/Simulator.java         |  3 +-
 .../orchestrator/orchestrator-client/pom.xml    | 26 +++++++---
 .../client/OrchestratorClientFactory.java       |  4 +-
 .../orchestrator/cpi/OrchestratorService.java   | 19 ++++++++
 .../cpi/orchestrator_cpiConstants.java          | 19 ++++++++
 .../sample/OrchestratorClientSample.java        |  6 +--
 modules/orchestrator/orchestrator-core/pom.xml  | 26 +++++++---
 .../core/OrchestratorConfiguration.java         |  5 +-
 .../core/context/OrchestratorContext.java       |  5 +-
 .../core/exception/OrchestratorException.java   |  5 +-
 .../core/impl/GFACPassiveJobSubmitter.java      |  5 +-
 .../orchestrator/core/job/JobSubmitter.java     |  5 +-
 .../core/utils/OrchestratorConstants.java       |  5 +-
 .../core/utils/OrchestratorUtils.java           |  5 +-
 .../core/validator/JobMetadataValidator.java    |  5 +-
 .../validator/impl/BatchQueueValidator.java     |  5 +-
 .../impl/ExperimentStatusValidator.java         |  5 +-
 .../airavata/orchestrator/cpi/Orchestrator.java |  5 +-
 .../cpi/impl/AbstractOrchestrator.java          |  5 +-
 .../cpi/impl/SimpleOrchestratorImpl.java        |  5 +-
 .../orchestrator/core/BaseOrchestratorTest.java |  5 +-
 .../orchestrator/core/NewOrchestratorTest.java  |  5 +-
 .../core/OrchestratorTestWithGRAM.java          |  5 +-
 .../core/OrchestratorTestWithMyProxyAuth.java   |  5 +-
 .../orchestrator/core/ValidatorTest.java        | 19 ++++++++
 .../orchestrator/core/util/Initialize.java      |  4 +-
 .../orchestrator/core/util/SecondValidator.java | 19 ++++++++
 .../orchestrator/core/util/TestValidator.java   | 19 ++++++++
 .../orchestrator/orchestrator-service/pom.xml   | 26 +++++++---
 .../orchestrator/server/OrchestratorServer.java |  4 +-
 .../server/OrchestratorServerHandler.java       |  4 +-
 .../airavata/orchestrator/util/Constants.java   |  4 +-
 .../OrchestratorServerThreadPoolExecutor.java   |  4 +-
 .../orchestrator/util/OrchestratorUtils.java    |  3 +-
 .../client/OrchestratorClientFactoryTest.java   |  6 +--
 .../orchestrator/client/util/Initialize.java    |  4 +-
 modules/orchestrator/pom.xml                    | 26 +++++++---
 modules/registry-refactoring/pom.xml            | 21 ++++++++
 .../registry/core/RegistryException.java        |  5 +-
 .../workspacecatalog/GatewayEntity.java         |  5 +-
 .../workspacecatalog/NSFDemographicsEntity.java |  5 +-
 .../workspacecatalog/NotificationEntity.java    |  5 +-
 .../workspacecatalog/ProjectEntity.java         |  5 +-
 .../workspacecatalog/UserProfileEntity.java     |  5 +-
 .../core/repositories/AbstractRepository.java   |  5 +-
 .../workspacecatalog/GatewayRepository.java     |  5 +-
 .../NotificationRepository.java                 |  5 +-
 .../workspacecatalog/ProjectRepository.java     |  5 +-
 .../workspacecatalog/UserProfileRepository.java |  5 +-
 .../airavata/registry/core/utils/Committer.java |  5 +-
 .../registry/core/utils/JPAConstants.java       |  4 +-
 .../airavata/registry/core/utils/JPAUtils.java  |  5 +-
 .../core/utils/ObjectMapperSingleton.java       |  5 +-
 .../registry/core/utils/QueryConstants.java     | 19 ++++++++
 .../airavata/registry/core/utils/Utils.java     |  3 +-
 .../repositories/WorkspaceRepositoryTest.java   |  5 +-
 modules/registry/pom.xml                        | 26 +++++++---
 modules/registry/registry-core/pom.xml          | 26 +++++++---
 .../core/app/catalog/impl/AppCatalogImpl.java   |  4 +-
 .../catalog/impl/ApplicationDeploymentImpl.java |  4 +-
 .../catalog/impl/ApplicationInterfaceImpl.java  |  4 +-
 .../app/catalog/impl/ComputeResourceImpl.java   |  4 +-
 .../catalog/impl/GwyResourceProfileImpl.java    |  4 +-
 .../app/catalog/impl/StorageResourceImpl.java   |  4 +-
 .../catalog/impl/UsrResourceProfileImpl.java    |  4 +-
 .../core/app/catalog/model/AppEnvironment.java  |  4 +-
 .../app/catalog/model/AppEnvironment_PK.java    |  4 +-
 .../core/app/catalog/model/AppInput_PK.java     |  4 +-
 .../app/catalog/model/AppModuleMapping.java     |  4 +-
 .../app/catalog/model/AppModuleMapping_PK.java  |  4 +-
 .../core/app/catalog/model/AppOutput_PK.java    |  4 +-
 .../catalog/model/ApplicationDeployment.java    |  4 +-
 .../app/catalog/model/ApplicationIntInput.java  |  4 +-
 .../app/catalog/model/ApplicationIntOutput.java |  4 +-
 .../app/catalog/model/ApplicationInterface.java |  4 +-
 .../app/catalog/model/ApplicationModule.java    |  4 +-
 .../core/app/catalog/model/BatchQueue.java      |  4 +-
 .../core/app/catalog/model/BatchQueue_PK.java   |  4 +-
 .../app/catalog/model/CloudJobSubmission.java   |  5 +-
 .../core/app/catalog/model/ComputeResource.java |  4 +-
 .../model/ComputeResourceFileSystem.java        |  4 +-
 .../model/ComputeResourceFileSystem_PK.java     |  4 +-
 .../model/ComputeResourcePreference.java        |  4 +-
 .../model/ComputeResourcePreferencePK.java      |  4 +-
 .../core/app/catalog/model/Configuration.java   | 19 ++++++++
 .../app/catalog/model/Configuration_PK.java     |  4 +-
 .../catalog/model/DataMovementInterface.java    |  4 +-
 .../catalog/model/DataMovementInterface_PK.java |  4 +-
 .../app/catalog/model/DataStorageResource.java  |  4 +-
 .../core/app/catalog/model/GSISSHExport.java    |  4 +-
 .../core/app/catalog/model/GSISSHExportPK.java  |  4 +-
 .../app/catalog/model/GSISSHSubmission.java     |  4 +-
 .../core/app/catalog/model/GatewayProfile.java  |  4 +-
 .../app/catalog/model/GlobusGKEndPointPK.java   |  4 +-
 .../app/catalog/model/GlobusGKEndpoint.java     |  4 +-
 .../app/catalog/model/GlobusJobSubmission.java  |  4 +-
 .../app/catalog/model/GridftpDataMovement.java  |  4 +-
 .../core/app/catalog/model/GridftpEndpoint.java |  4 +-
 .../app/catalog/model/GridftpEndpoint_PK.java   |  4 +-
 .../core/app/catalog/model/HostAlias.java       |  4 +-
 .../core/app/catalog/model/HostAliasPK.java     |  4 +-
 .../core/app/catalog/model/HostIPAddress.java   |  4 +-
 .../core/app/catalog/model/HostIPAddressPK.java |  4 +-
 .../app/catalog/model/JobManagerCommand.java    |  4 +-
 .../app/catalog/model/JobManagerCommand_PK.java |  4 +-
 .../catalog/model/JobSubmissionInterface.java   |  4 +-
 .../model/JobSubmissionInterface_PK.java        |  4 +-
 .../app/catalog/model/LibraryApendPath.java     |  4 +-
 .../app/catalog/model/LibraryApendPath_PK.java  |  4 +-
 .../app/catalog/model/LibraryPrepandPath.java   |  4 +-
 .../catalog/model/LibraryPrepandPath_PK.java    |  4 +-
 .../app/catalog/model/LocalDataMovement.java    |  4 +-
 .../core/app/catalog/model/LocalSubmission.java |  4 +-
 .../core/app/catalog/model/ModuleLoadCmd.java   |  4 +-
 .../app/catalog/model/ModuleLoadCmd_PK.java     |  4 +-
 .../catalog/model/ParallelismPrefixCommand.java |  4 +-
 .../model/ParallelismPrefixCommand_PK.java      |  4 +-
 .../core/app/catalog/model/PostJobCommand.java  |  4 +-
 .../app/catalog/model/PostJobCommandPK.java     |  4 +-
 .../core/app/catalog/model/PreJobCommand.java   |  4 +-
 .../core/app/catalog/model/PreJobCommandPK.java |  4 +-
 .../app/catalog/model/ResourceJobManager.java   |  4 +-
 .../core/app/catalog/model/ScpDataMovement.java |  4 +-
 .../app/catalog/model/SshJobSubmission.java     |  4 +-
 .../app/catalog/model/StorageInterface.java     |  4 +-
 .../app/catalog/model/StorageInterface_PK.java  |  4 +-
 .../app/catalog/model/StoragePreference.java    |  4 +-
 .../app/catalog/model/StoragePreferencePK.java  |  4 +-
 .../core/app/catalog/model/StorageResource.java |  4 +-
 .../app/catalog/model/UnicoreDataMovement.java  |  6 +--
 .../app/catalog/model/UnicoreJobSubmission.java |  6 +--
 .../model/UserComputeResourcePreference.java    |  4 +-
 .../model/UserComputeResourcePreferencePK.java  |  4 +-
 .../app/catalog/model/UserResourceProfile.java  |  4 +-
 .../catalog/model/UserResourceProfilePK.java    |  4 +-
 .../catalog/model/UserStoragePreference.java    |  4 +-
 .../catalog/model/UserStoragePreferencePK.java  |  4 +-
 .../resources/AppCatAbstractResource.java       |  4 +-
 .../catalog/resources/AppCatalogResource.java   | 19 ++++++++
 .../resources/AppDeploymentResource.java        |  4 +-
 .../resources/AppEnvironmentResource.java       |  4 +-
 .../catalog/resources/AppInterfaceResource.java |  4 +-
 ...ppModuleMappingAppCatalogResourceAppCat.java |  4 +-
 .../catalog/resources/AppModuleResource.java    |  4 +-
 .../resources/ApplicationInputResource.java     |  2 +-
 .../resources/ApplicationOutputResource.java    |  2 +-
 .../catalog/resources/BatchQueueResource.java   |  4 +-
 .../resources/CloudSubmissionResource.java      |  5 +-
 .../ComputeHostPreferenceResource.java          |  4 +-
 .../ComputeResourceFileSystemResource.java      |  4 +-
 .../resources/ComputeResourceResource.java      |  4 +-
 .../DataMovementInterfaceResource.java          |  4 +-
 .../catalog/resources/GSISSHExportResource.java |  2 +-
 .../resources/GSISSHSubmissionResource.java     |  2 +-
 .../resources/GatewayProfileResource.java       |  2 +-
 .../resources/GlobusGKEndpointResource.java     |  2 +-
 .../resources/GlobusJobSubmissionResource.java  |  2 +-
 .../resources/GridftpDataMovementResource.java  |  2 +-
 .../resources/GridftpEndpointResource.java      |  2 +-
 .../catalog/resources/HostAliasAppResource.java |  2 +-
 .../resources/HostIPAddressResource.java        |  2 +-
 .../resources/JobManagerCommandResource.java    |  4 +-
 .../JobSubmissionInterfaceResource.java         |  4 +-
 .../resources/LibraryApendPathResource.java     |  4 +-
 .../resources/LibraryPrepandPathResource.java   |  4 +-
 .../resources/LocalDataMovementResource.java    |  4 +-
 .../resources/LocalSubmissionResource.java      |  4 +-
 .../resources/ModuleLoadCmdResource.java        |  4 +-
 .../ParallelismPrefixCommandResource.java       |  4 +-
 .../resources/PostJobCommandResource.java       |  2 +-
 .../resources/PreJobCommandResource.java        |  2 +-
 .../resources/ResourceJobManagerResource.java   |  4 +-
 .../resources/ScpDataMovementResource.java      |  2 +-
 .../resources/SshJobSubmissionResource.java     |  2 +-
 .../resources/StorageInterfaceResource.java     |  4 +-
 .../resources/StoragePreferenceResource.java    |  4 +-
 .../resources/StorageResourceResource.java      |  4 +-
 .../resources/UnicoreDataMovementResource.java  |  6 +--
 .../resources/UnicoreJobSubmissionResource.java |  6 +--
 .../UserComputeHostPreferenceResource.java      |  4 +-
 .../resources/UserResourceProfileResource.java  |  2 +-
 .../UserStoragePreferenceResource.java          |  4 +-
 .../app/catalog/util/AppCatalogJPAUtils.java    |  4 +-
 .../catalog/util/AppCatalogQueryGenerator.java  |  4 +-
 .../catalog/util/AppCatalogResourceType.java    |  4 +-
 .../util/AppCatalogThriftConversion.java        |  4 +-
 .../core/app/catalog/util/AppCatalogUtils.java  |  4 +-
 .../experiment/catalog/ExpCatResourceUtils.java |  5 +-
 .../catalog/ExperimentCatResource.java          |  5 +-
 .../core/experiment/catalog/JPAConstants.java   |  4 +-
 .../core/experiment/catalog/ResourceType.java   |  5 +-
 .../catalog/impl/ExperimentCatalogImpl.java     |  4 +-
 .../catalog/impl/ExperimentRegistry.java        |  4 +-
 .../catalog/impl/GatewayRegistry.java           |  4 +-
 .../catalog/impl/NotificationRegistry.java      |  4 +-
 .../catalog/impl/ProjectRegistry.java           |  4 +-
 .../catalog/impl/RegistryFactory.java           |  4 +-
 .../experiment/catalog/impl/UserRegistry.java   |  4 +-
 .../experiment/catalog/model/Experiment.java    |  5 +-
 .../catalog/model/ExperimentError.java          |  5 +-
 .../catalog/model/ExperimentErrorPK.java        |  5 +-
 .../catalog/model/ExperimentInput.java          |  5 +-
 .../catalog/model/ExperimentInputPK.java        |  5 +-
 .../catalog/model/ExperimentOutput.java         |  5 +-
 .../catalog/model/ExperimentOutputPK.java       |  5 +-
 .../catalog/model/ExperimentStatus.java         |  5 +-
 .../catalog/model/ExperimentStatusPK.java       |  5 +-
 .../catalog/model/ExperimentSummary.java        |  5 +-
 .../core/experiment/catalog/model/Gateway.java  |  5 +-
 .../experiment/catalog/model/GatewayWorker.java |  5 +-
 .../catalog/model/GatewayWorkerPK.java          |  5 +-
 .../core/experiment/catalog/model/Job.java      |  5 +-
 .../core/experiment/catalog/model/JobPK.java    |  5 +-
 .../experiment/catalog/model/JobStatus.java     |  5 +-
 .../experiment/catalog/model/JobStatusPK.java   |  5 +-
 .../experiment/catalog/model/Notification.java  |  5 +-
 .../core/experiment/catalog/model/Process.java  |  5 +-
 .../experiment/catalog/model/ProcessError.java  |  5 +-
 .../catalog/model/ProcessErrorPK.java           |  5 +-
 .../experiment/catalog/model/ProcessInput.java  |  5 +-
 .../catalog/model/ProcessInputPK.java           |  5 +-
 .../experiment/catalog/model/ProcessOutput.java |  5 +-
 .../catalog/model/ProcessOutputPK.java          |  5 +-
 .../catalog/model/ProcessResourceSchedule.java  |  5 +-
 .../experiment/catalog/model/ProcessStatus.java |  5 +-
 .../catalog/model/ProcessStatusPK.java          |  5 +-
 .../core/experiment/catalog/model/Project.java  |  5 +-
 .../experiment/catalog/model/ProjectUser.java   |  5 +-
 .../experiment/catalog/model/ProjectUserPK.java |  5 +-
 .../experiment/catalog/model/QueueStatus.java   |  5 +-
 .../experiment/catalog/model/QueueStatusPK.java |  5 +-
 .../core/experiment/catalog/model/Task.java     |  5 +-
 .../experiment/catalog/model/TaskError.java     |  5 +-
 .../experiment/catalog/model/TaskErrorPK.java   |  5 +-
 .../experiment/catalog/model/TaskStatus.java    |  5 +-
 .../experiment/catalog/model/TaskStatusPK.java  |  5 +-
 .../catalog/model/UserConfigurationData.java    |  5 +-
 .../core/experiment/catalog/model/UserPK.java   |  5 +-
 .../core/experiment/catalog/model/Users.java    |  5 +-
 .../resources/AbstractExpCatResource.java       |  3 +-
 .../resources/ExperimentErrorResource.java      |  4 +-
 .../resources/ExperimentInputResource.java      |  4 +-
 .../resources/ExperimentOutputResource.java     |  4 +-
 .../catalog/resources/ExperimentResource.java   |  4 +-
 .../resources/ExperimentStatisticsResource.java |  5 +-
 .../resources/ExperimentStatusResource.java     |  4 +-
 .../resources/ExperimentSummaryResource.java    |  5 +-
 .../catalog/resources/GatewayResource.java      |  5 +-
 .../catalog/resources/JobResource.java          |  4 +-
 .../catalog/resources/JobStatusResource.java    |  4 +-
 .../catalog/resources/NotificationResource.java |  5 +-
 .../catalog/resources/ProcessErrorResource.java |  4 +-
 .../catalog/resources/ProcessInputResource.java |  4 +-
 .../resources/ProcessOutputResource.java        |  4 +-
 .../catalog/resources/ProcessResource.java      |  4 +-
 .../ProcessResourceScheduleResource.java        |  4 +-
 .../resources/ProcessStatusResource.java        |  4 +-
 .../catalog/resources/ProjectResource.java      |  5 +-
 .../catalog/resources/ProjectUserResource.java  |  4 +-
 .../catalog/resources/QueueStatusResource.java  |  5 +-
 .../catalog/resources/TaskErrorResource.java    |  4 +-
 .../catalog/resources/TaskResource.java         |  4 +-
 .../catalog/resources/TaskStatusResource.java   |  4 +-
 .../UserConfigurationDataResource.java          |  4 +-
 .../catalog/resources/UserResource.java         |  5 +-
 .../experiment/catalog/resources/Utils.java     |  3 +-
 .../catalog/resources/WorkerResource.java       |  4 +-
 .../catalog/utils/QueryGenerator.java           |  4 +-
 .../utils/ThriftDataModelConversion.java        | 19 ++++++++
 .../registry/core/impl/RegistryImpl.java        |  6 +--
 .../catalog/impl/ReplicaCatalogImpl.java        |  4 +-
 .../replica/catalog/model/Configuration.java    | 19 ++++++++
 .../replica/catalog/model/Configuration_PK.java |  4 +-
 .../core/replica/catalog/model/DataProduct.java |  5 +-
 .../catalog/model/DataProductMetaData.java      |  5 +-
 .../catalog/model/DataProductMetaData_PK.java   |  5 +-
 .../catalog/model/DataReplicaLocation.java      |  5 +-
 .../catalog/model/DataReplicaMetaData.java      |  5 +-
 .../catalog/model/DataReplicaMetaData_PK.java   |  5 +-
 .../catalog/utils/ReplicaCatalogConstants.java  |  3 +-
 .../catalog/utils/ReplicaCatalogJPAUtils.java   |  4 +-
 .../utils/ReplicaCatalogQueryGenerator.java     |  4 +-
 .../utils/ThriftDataModelConversion.java        | 19 ++++++++
 .../catalog/impl/WorkflowCatalogImpl.java       |  4 +-
 .../workflow/catalog/model/ComponentStatus.java |  4 +-
 .../core/workflow/catalog/model/Edge.java       |  4 +-
 .../core/workflow/catalog/model/Edge_PK.java    |  4 +-
 .../core/workflow/catalog/model/Node.java       |  4 +-
 .../core/workflow/catalog/model/Node_PK.java    |  4 +-
 .../core/workflow/catalog/model/Port.java       |  4 +-
 .../core/workflow/catalog/model/Port_PK.java    |  4 +-
 .../core/workflow/catalog/model/Workflow.java   |  4 +-
 .../workflow/catalog/model/WorkflowInput.java   |  4 +-
 .../catalog/model/WorkflowInput_PK.java         |  4 +-
 .../workflow/catalog/model/WorkflowOutput.java  |  4 +-
 .../catalog/model/WorkflowOutput_PK.java        |  4 +-
 .../workflow/catalog/model/WorkflowStatus.java  |  4 +-
 .../catalog/model/WorkflowStatus_PK.java        |  4 +-
 .../resources/ComponentStatusResource.java      |  2 +-
 .../catalog/resources/EdgeResource.java         |  2 +-
 .../catalog/resources/NodeResource.java         |  2 +-
 .../catalog/resources/PortResource.java         |  2 +-
 .../resources/WorkflowCatAbstractResource.java  |  4 +-
 .../resources/WorkflowCatalogResource.java      | 19 ++++++++
 .../resources/WorkflowInputResource.java        |  2 +-
 .../resources/WorkflowOutputResource.java       |  2 +-
 .../catalog/resources/WorkflowResource.java     |  4 +-
 .../resources/WorkflowStatusResource.java       |  2 +-
 .../catalog/utils/WorkflowCatalogJPAUtils.java  |  4 +-
 .../utils/WorkflowCatalogQueryGenerator.java    |  4 +-
 .../utils/WorkflowCatalogResourceType.java      |  4 +-
 .../utils/WorkflowCatalogThriftConversion.java  |  4 +-
 .../catalog/utils/WorkflowCatalogUtils.java     |  4 +-
 .../airavata/app/catalog/AppDeploymentTest.java |  4 +-
 .../airavata/app/catalog/AppInterfaceTest.java  |  4 +-
 ...puteAppCatalogExperimentCatResourceTest.java |  4 +-
 .../app/catalog/GatewayProfileTest.java         |  4 +-
 .../catalog/StorageResourceAppCatalogTest.java  |  4 +-
 .../app/catalog/UserResourceProfileTest.java    |  4 +-
 .../airavata/app/catalog/util/Initialize.java   |  4 +-
 .../catalog/AbstractResourceTest.java           |  4 +-
 .../catalog/ExperimentInputResourceTest.java    | 19 ++++++++
 .../catalog/ExperimentOutputResourceTest.java   | 19 ++++++++
 .../catalog/ExperimentResourceTest.java         | 19 ++++++++
 .../experiment/catalog/GatewayResourceTest.java | 19 ++++++++
 .../experiment/catalog/JobResourceTest.java     |  2 +-
 .../experiment/catalog/ProcessResourceTest.java |  2 +-
 .../catalog/QueueStatusResourceTest.java        | 19 ++++++++
 .../experiment/catalog/TaskResourceTest.java    |  2 +-
 .../catalog/UserConfigurationDataTest.java      |  4 +-
 .../experiment/catalog/UserResourceTest.java    | 19 ++++++++
 .../experiment/catalog/util/Initialize.java     |  4 +-
 .../replica/catalog/ReplicaCatalogTest.java     |  5 +-
 .../replica/catalog/util/Initialize.java        |  4 +-
 modules/registry/registry-cpi/pom.xml           | 26 +++++++---
 .../airavata/registry/cpi/AppCatalog.java       |  2 +-
 .../registry/cpi/AppCatalogException.java       |  2 +-
 .../registry/cpi/ApplicationDeployment.java     |  2 +-
 .../registry/cpi/ApplicationInterface.java      |  2 +-
 .../registry/cpi/CompositeIdentifier.java       |  4 +-
 .../airavata/registry/cpi/ComputeResource.java  |  2 +-
 .../registry/cpi/ExpCatChildDataType.java       |  2 +-
 .../registry/cpi/ExpCatParentDataType.java      |  2 +-
 .../registry/cpi/ExperimentCatalog.java         |  2 +-
 .../cpi/ExperimentCatalogException.java         |  6 +--
 .../cpi/ExperimentCatalogModelType.java         |  2 +-
 .../registry/cpi/GwyClientCredential.java       |  2 +-
 .../registry/cpi/GwyResourceProfile.java        |  2 +-
 .../apache/airavata/registry/cpi/Registry.java  |  6 +--
 .../registry/cpi/RegistryException.java         |  4 +-
 .../airavata/registry/cpi/ReplicaCatalog.java   |  2 +-
 .../registry/cpi/ReplicaCatalogException.java   |  2 +-
 .../airavata/registry/cpi/ResultOrderType.java  | 19 ++++++++
 .../airavata/registry/cpi/StorageResource.java  |  8 ++--
 .../registry/cpi/UsrResourceProfile.java        |  2 +-
 .../airavata/registry/cpi/WorkflowCatalog.java  |  6 +--
 .../registry/cpi/WorkflowCatalogException.java  |  2 +-
 .../airavata/registry/cpi/utils/Constants.java  |  4 +-
 .../airavata/registry/cpi/utils/StatusType.java |  2 +-
 modules/registry/registry-server/pom.xml        | 21 ++++++++
 .../registry-api-service/pom.xml                | 21 ++++++++
 .../registry/api/service/RegistryAPIServer.java |  5 +-
 .../service/handler/RegistryServerHandler.java  |  5 +-
 .../api/service/util/AppCatalogInitUtil.java    | 19 ++++++++
 .../api/service/util/ConnectionPool.java        |  6 +--
 .../registry/api/service/util/Constants.java    |  4 +-
 .../api/service/util/DatabaseCreator.java       |  5 +-
 .../service/util/ExperimentCatalogInitUtil.java | 19 ++++++++
 .../registry/api/service/util/JdbcStorage.java  |  5 +-
 .../service/util/ReplicaCatalogInitUtil.java    | 19 ++++++++
 .../service/util/WorkflowCatalogInitUtil.java   | 19 ++++++++
 .../registry-server/registry-api-stubs/pom.xml  | 21 ++++++++
 .../airavata/registry/api/RegistryService.java  | 19 ++++++++
 .../client/RegistryServiceClientFactory.java    |  4 +-
 .../api/exception/RegistryServiceException.java | 19 ++++++++
 .../registry/api/registry_apiConstants.java     | 19 ++++++++
 modules/registry/registry-tools/jpa-gen/pom.xml | 26 +++++++---
 .../computeresource/BatchQueueGenerator.java    |  4 +-
 .../ComputeResourceDescriptionGenerator.java    |  4 +-
 .../DataMovementInterfaceGenerator.java         |  4 +-
 .../computeresource/FileSystemsGenerator.java   |  4 +-
 .../GridFTPDataMovementGenerator.java           |  4 +-
 .../GridFTPEndpointsGenerator.java              |  4 +-
 .../JobManagerCommandGenerator.java             |  4 +-
 .../JobSubmissionInterfaceGenerator.java        |  4 +-
 .../LocalDataMovementGenerator.java             |  4 +-
 .../LocalSubmissionGenerator.java               |  4 +-
 .../computeresource/ModuleCMDGenerator.java     |  4 +-
 .../ResourceJobManagerGenerator.java            |  4 +-
 .../SCPDataMovementGenerator.java               |  4 +-
 .../SSHJobSubmissionGenerator.java              |  4 +-
 .../main/java/generators/AbstractGenerator.java | 19 ++++++++
 .../main/java/generators/JPAClassGenerator.java | 19 ++++++++
 .../generators/JPAResourceClassGenerator.java   | 19 ++++++++
 .../src/main/java/generators/SQLGenerator.java  | 19 ++++++++
 .../src/main/java/model/JPAClassField.java      | 19 ++++++++
 .../src/main/java/model/JPAClassModel.java      | 19 ++++++++
 .../src/main/java/model/JPAPKClassModel.java    | 19 ++++++++
 .../main/java/model/JPAResourceClassModel.java  | 19 ++++++++
 .../jpa-gen/src/main/java/model/SQLData.java    | 19 ++++++++
 .../jpa-gen/src/main/java/test/Test.java        | 19 ++++++++
 modules/registry/registry-tools/pom.xml         | 26 +++++++---
 .../registry-tools/registry-tool/pom.xml        | 26 +++++++---
 .../airavata/registry/tool/DBMigrator.java      |  4 +-
 .../DeltaScripts/appCatalog_schema_delta.sql    | 20 ++++++++
 .../credentialStore_schema_delta.sql            | 20 ++++++++
 .../DeltaScripts/expCatalog_schema_delta.sql    | 20 ++++++++
 .../replicaCatalog_schema_delta.sql             | 20 ++++++++
 .../DeltaScripts/workFlow_schema_delta.sql      | 20 ++++++++
 modules/security/pom.xml                        | 26 +++++++---
 .../security/AbstractAuthenticator.java         |  4 +-
 .../security/AbstractDatabaseAuthenticator.java |  4 +-
 .../security/AiravataSecurityException.java     |  3 +-
 .../security/AuthenticationException.java       |  4 +-
 .../apache/airavata/security/Authenticator.java |  4 +-
 .../apache/airavata/security/Authoriser.java    |  4 +-
 .../org/apache/airavata/security/UserStore.java |  4 +-
 .../airavata/security/UserStoreException.java   |  4 +-
 .../AbstractConfigurationReader.java            |  4 +-
 .../AuthenticatorConfigurationReader.java       |  4 +-
 .../userstore/AbstractJDBCUserStore.java        |  4 +-
 .../security/userstore/JDBCUserStore.java       |  4 +-
 .../security/userstore/LDAPUserStore.java       |  4 +-
 .../security/userstore/SessionDBUserStore.java  |  4 +-
 .../security/util/PasswordDigester.java         |  4 +-
 .../security/util/TrustStoreManager.java        |  3 +-
 .../AuthenticatorConfigurationReaderTest.java   |  4 +-
 .../configurations/TestDBAuthenticator1.java    |  4 +-
 .../configurations/TestDBAuthenticator2.java    |  4 +-
 .../configurations/TestDBAuthenticator3.java    |  4 +-
 .../security/configurations/TestUserStore.java  | 36 +++++++-------
 .../security/userstore/JDBCUserStoreTest.java   | 36 +++++++-------
 .../security/userstore/LDAPUserStoreTest.java   | 36 +++++++-------
 .../userstore/SessionDBUserStoreTest.java       | 36 +++++++-------
 modules/server/pom.xml                          | 26 +++++++---
 .../org/apache/airavata/server/ServerMain.java  |  3 +-
 modules/sharing-registry/pom.xml                | 21 ++++++++
 .../sharing-data-migrator/pom.xml               | 21 ++++++++
 .../migrator/airavata/AiravataDataMigrator.java |  5 +-
 .../migrator/airavata/ConnectionFactory.java    |  5 +-
 .../sharing-registry-distribution/pom.xml       | 21 ++++++++
 .../src/main/assembly/bin-assembly.xml          | 37 ++++++++-------
 .../sharing-registry-server/pom.xml             | 21 ++++++++
 .../registry/db/entities/DomainEntity.java      |  5 +-
 .../registry/db/entities/EntityEntity.java      |  5 +-
 .../sharing/registry/db/entities/EntityPK.java  |  5 +-
 .../registry/db/entities/EntityTypeEntity.java  |  5 +-
 .../registry/db/entities/EntityTypePK.java      |  5 +-
 .../db/entities/GroupMembershipEntity.java      |  5 +-
 .../registry/db/entities/GroupMembershipPK.java |  5 +-
 .../db/entities/PermissionTypeEntity.java       |  5 +-
 .../registry/db/entities/PermissionTypePK.java  |  5 +-
 .../registry/db/entities/SharingEntity.java     |  5 +-
 .../sharing/registry/db/entities/SharingPK.java |  5 +-
 .../registry/db/entities/UserEntity.java        |  5 +-
 .../registry/db/entities/UserGroupEntity.java   |  5 +-
 .../registry/db/entities/UserGroupPK.java       |  5 +-
 .../sharing/registry/db/entities/UserPK.java    |  5 +-
 .../db/repositories/AbstractRepository.java     |  5 +-
 .../db/repositories/DomainRepository.java       |  5 +-
 .../db/repositories/EntityRepository.java       |  5 +-
 .../db/repositories/EntityTypeRepository.java   |  5 +-
 .../repositories/GroupMembershipRepository.java |  5 +-
 .../repositories/PermissionTypeRepository.java  |  5 +-
 .../db/repositories/SharingRepository.java      |  5 +-
 .../db/repositories/UserGroupRepository.java    |  5 +-
 .../db/repositories/UserRepository.java         |  5 +-
 .../sharing/registry/db/utils/Committer.java    |  5 +-
 .../registry/db/utils/ConnectionPool.java       |  5 +-
 .../sharing/registry/db/utils/DBConstants.java  |  5 +-
 .../registry/db/utils/DatabaseCreator.java      |  5 +-
 .../sharing/registry/db/utils/JPAUtils.java     |  5 +-
 .../sharing/registry/db/utils/JdbcStorage.java  |  5 +-
 .../db/utils/ObjectMapperSingleton.java         |  5 +-
 .../sharing/registry/server/ServerMain.java     |  5 +-
 .../registry/server/SharingRegistryServer.java  |  5 +-
 .../server/SharingRegistryServerHandler.java    |  5 +-
 .../airavata/sharing/registry/CipresTest.java   |  5 +-
 .../SharingRegistryServerHandlerTest.java       |  5 +-
 .../registry/SharingRegistryServiceTest.java    |  5 +-
 .../sharing/registry/util/Initialize.java       |  4 +-
 .../sharing-registry-stubs/pom.xml              | 21 ++++++++
 .../SharingRegistryServiceClientFactory.java    |  5 +-
 .../sharing/registry/models/Domain.java         | 19 ++++++++
 .../sharing/registry/models/Entity.java         | 19 ++++++++
 .../registry/models/EntitySearchField.java      | 19 ++++++++
 .../sharing/registry/models/EntityType.java     | 19 ++++++++
 .../registry/models/GroupCardinality.java       | 19 ++++++++
 .../sharing/registry/models/GroupChildType.java | 19 ++++++++
 .../registry/models/GroupMembership.java        | 19 ++++++++
 .../sharing/registry/models/GroupType.java      | 19 ++++++++
 .../sharing/registry/models/PermissionType.java | 19 ++++++++
 .../registry/models/SearchCondition.java        | 19 ++++++++
 .../sharing/registry/models/SearchCriteria.java | 19 ++++++++
 .../sharing/registry/models/Sharing.java        | 19 ++++++++
 .../models/SharingRegistryException.java        | 19 ++++++++
 .../sharing/registry/models/SharingType.java    | 19 ++++++++
 .../airavata/sharing/registry/models/User.java  | 19 ++++++++
 .../sharing/registry/models/UserGroup.java      | 19 ++++++++
 .../models/sharing_modelsConstants.java         | 19 ++++++++
 .../service/cpi/SharingRegistryService.java     | 19 ++++++++
 .../sharing-service-docs/api-docs/index.html    | 21 ++++++++
 .../api-docs/sharing_cpi.html                   | 21 ++++++++
 .../api-docs/sharing_models.html                | 21 ++++++++
 .../sharing-service-docs/api-docs/style.css     | 22 ++++++---
 .../sharing-service-docs/index.html             | 21 ++++++++
 .../sharing-service-docs/style.css              | 22 ++++++---
 .../thrift_models/thrift-gen.sh                 | 20 ++++++++
 .../test-suite/multi-tenanted-airavata/pom.xml  | 26 +++++++---
 .../multitenantedairavata/AiravataClient.java   |  6 +--
 .../multitenantedairavata/AiravataIT.java       |  6 +--
 .../ApplicationRegister.java                    |  6 +--
 .../ComputeResourceRegister.java                |  6 +--
 .../ExperimentExecution.java                    |  6 +--
 .../FrameworkBootstrapping.java                 | 19 ++++++++
 .../multitenantedairavata/FrameworkSetup.java   |  6 +--
 .../multitenantedairavata/GatewayRegister.java  |  6 +--
 .../StorageResourceRegister.java                | 19 ++++++++
 .../TestFrameworkProps.java                     |  6 +--
 .../utils/ApplicationProperties.java            | 19 ++++++++
 .../utils/ComputeResourceProperties.java        | 19 ++++++++
 .../utils/FrameworkUtils.java                   |  6 +--
 .../utils/PropertyFileType.java                 |  6 +--
 .../utils/PropertyReader.java                   |  6 +--
 .../utils/TestFrameworkConstants.java           |  6 +--
 modules/test-suite/pom.xml                      | 26 +++++++---
 modules/user-profile-migration/pom.xml          | 31 ++++++++----
 .../apache/airavata/ISLoginCredentialsDAO.java  | 19 ++++++++
 .../apache/airavata/IdentityServerClient.java   | 19 ++++++++
 .../org/apache/airavata/MigrationManager.java   |  4 +-
 .../UserProfileAiravataThriftClient.java        |  4 +-
 .../org/apache/airavata/UserProfileDAO.java     |  4 +-
 modules/user-profile/pom.xml                    | 31 ++++++++----
 .../user-profile/user-profile-service/pom.xml   | 21 ++++++++
 .../user/profile/server/UserProfileServer.java  |  6 +--
 .../server/UserProfileServiceHandler.java       |  5 +-
 modules/user-profile/user-profile-stubs/pom.xml | 31 ++++++++----
 .../userprofile/cpi/UserProfileService.java     | 19 ++++++++
 .../client/UserProfileServiceClientFactory.java |  3 +-
 .../exception/UserProfileServiceException.java  | 19 ++++++++
 .../cpi/user_profile_cpiConstants.java          | 19 ++++++++
 modules/workflow-model/pom.xml                  | 26 +++++++---
 modules/workflow-model/workflow-engine/pom.xml  | 26 +++++++---
 .../catalog/WorkflowCatalogFactory.java         |  4 +-
 .../workflow/engine/WorkflowEngine.java         |  4 +-
 .../engine/WorkflowEngineException.java         |  4 +-
 .../workflow/engine/WorkflowEngineFactory.java  |  4 +-
 .../workflow/engine/WorkflowEngineImpl.java     |  4 +-
 .../airavata/workflow/engine/WorkflowUtils.java |  4 +-
 .../engine/concurrent/PredicatedExecutable.java |  5 +-
 .../engine/concurrent/PredicatedTaskRunner.java |  5 +-
 .../engine/core/amazon/AmazonCredential.java    |  4 +-
 .../engine/core/amazon/EC2InstanceResult.java   | 19 ++++++++
 .../engine/core/generators/XmlBeansFiler.java   |  4 +-
 .../core/workflow/ParameterListModel.java       |  4 +-
 .../engine/datadriven/WorkflowHarvester.java    |  4 +-
 .../engine/file/XBayaPathConstants.java         |  4 +-
 .../engine/gfac/GFacRegistryClient.java         |  4 +-
 .../workflow/engine/gfac/SimpleWSClient.java    |  4 +-
 .../engine/globus/FileTransferConstants.java    |  4 +-
 .../globus/GridFTPFileTransferClient.java       | 19 ++++++++
 .../engine/graph/controller/NodeController.java | 19 ++++++++
 .../engine/interpretor/DoWhileHandler.java      |  3 +-
 .../engine/interpretor/HeaderConstants.java     |  4 +-
 .../SSWorkflowInterpreterInteractorImpl.java    |  4 +-
 .../interpretor/SystemComponentInvoker.java     |  4 +-
 .../WorkFlowInterpreterException.java           |  4 +-
 .../interpretor/WorkflowExecutionMessage.java   |  4 +-
 .../engine/interpretor/WorkflowInterpreter.java |  4 +-
 .../WorkflowInterpreterConfiguration.java       |  4 +-
 .../WorkflowInterpreterInteractor.java          |  4 +-
 .../interpretor/WorkflowInterpreterInvoker.java |  4 +-
 .../WorkflowInterpreterSkeleton2.java           | 19 ++++++++
 .../engine/invoker/AsynchronousInvoker.java     |  4 +-
 .../workflow/engine/invoker/DynamicInvoker.java |  4 +-
 .../workflow/engine/invoker/Invoker.java        |  4 +-
 .../invoker/MsgBoxWsaResponsesCorrelator.java   | 19 ++++++++
 .../workflow/engine/invoker/SimpleInvoker.java  |  4 +-
 .../engine/invoker/WorkflowInputUtil.java       |  5 +-
 .../workflow/engine/util/AmazonUtil.java        |  4 +-
 .../airavata/workflow/engine/util/Data.java     |  4 +-
 .../workflow/engine/util/GOConstants.java       |  4 +-
 .../workflow/engine/util/GlobusOnlineUtils.java | 19 ++++++++
 .../workflow/engine/util/InterpreterUtil.java   |  3 +-
 .../engine/util/ProxyMonitorPublisher.java      |  4 +-
 .../workflow/engine/util/RegistryConstants.java |  4 +-
 .../workflow/engine/util/TransferFile.java      |  4 +-
 .../workflow/engine/util/XBayaUtil.java         |  4 +-
 .../workflow/WorkflowEngineException.java       |  4 +-
 .../engine/workflow/proxy/ProxyWSDL.java        |  4 +-
 .../engine/workflow/proxy/WorkflowClient.java   |  4 +-
 .../engine/workflow/proxy/WorkflowContext.java  |  4 +-
 .../workflow/proxy/WorkflowProxyException.java  |  4 +-
 .../interpreter/ComplexForEachWorkflowTest.java | 19 ++++++++
 .../xbaya/interpreter/ComplexMathService.java   |  4 +-
 .../interpreter/ComplexMathWorkflowTest.java    | 19 ++++++++
 .../interpreter/CrossProductWorkflowTest.java   | 19 ++++++++
 .../airavata/xbaya/interpreter/EchoService.java |  3 +-
 .../xbaya/interpreter/ForEachWorkflowTest.java  | 19 ++++++++
 .../interpreter/LevenshteinDistanceService.java |  4 +-
 .../airavata/xbaya/interpreter/Listener.java    | 19 ++++++++
 .../xbaya/interpreter/NotificationSender.java   | 19 ++++++++
 .../xbaya/interpreter/RegistryServiceTest.java  | 19 ++++++++
 .../interpreter/SimpleForEachWorkflowTest.java  | 19 ++++++++
 .../interpreter/SimpleMathWorkflowTest.java     | 19 ++++++++
 .../xbaya/interpreter/WorkflowTest.java         | 19 ++++++++
 .../xbaya/interpreter/WorkflowTrackingTest.java | 19 ++++++++
 .../xbaya/interpreter/XBayaClientTest.java      |  5 +-
 .../interpreter/XBayaConsolidatedTestSuite.java | 19 ++++++++
 .../xbaya/interpreter/utils/ConfigKeys.java     |  5 +-
 .../xbaya/interpreter/utils/TestUtilServer.java | 19 ++++++++
 .../interpreter/utils/WorkflowTestUtils.java    | 19 ++++++++
 .../workflow-model-component/pom.xml            | 26 +++++++---
 .../registry/JCRComponentReference.java         |  4 +-
 .../registry/JCRComponentRegistry.java          |  4 +-
 .../workflow-model/workflow-model-core/pom.xml  | 26 +++++++---
 .../workflow/model/component/Component.java     |  4 +-
 .../model/component/ComponentControlPort.java   |  4 +-
 .../model/component/ComponentDataPort.java      |  4 +-
 .../model/component/ComponentEPRPort.java       |  4 +-
 .../model/component/ComponentException.java     |  4 +-
 .../component/ComponentOperationReference.java  |  4 +-
 .../workflow/model/component/ComponentPort.java |  4 +-
 .../model/component/ComponentReference.java     |  4 +-
 .../model/component/ComponentRegistry.java      |  4 +-
 .../component/ComponentRegistryException.java   |  4 +-
 .../amazon/AmazonComponentRegistry.java         |  4 +-
 .../component/amazon/InstanceComponent.java     |  4 +-
 .../amazon/InstanceComponentDataPort.java       |  4 +-
 .../amazon/TerminateInstanceComponent.java      |  4 +-
 .../component/dynamic/DynamicComponent.java     |  4 +-
 .../component/dynamic/DynamicComponentPort.java |  4 +-
 .../local/LocalComponentReference.java          |  4 +-
 .../component/local/LocalComponentRegistry.java |  4 +-
 .../model/component/system/BlockComponent.java  |  4 +-
 .../component/system/ConstantComponent.java     |  4 +-
 .../system/DifferedInputComponent.java          |  8 ++--
 .../component/system/DoWhileComponent.java      |  4 +-
 .../component/system/EndBlockComponent.java     |  4 +-
 .../component/system/EndDoWhileComponent.java   |  4 +-
 .../component/system/EndForEachComponent.java   |  4 +-
 .../model/component/system/EndifComponent.java  |  4 +-
 .../model/component/system/ExitComponent.java   |  4 +-
 .../component/system/ForEachComponent.java      |  4 +-
 .../model/component/system/IfComponent.java     |  4 +-
 .../model/component/system/InputComponent.java  |  4 +-
 .../model/component/system/MemoComponent.java   |  4 +-
 .../model/component/system/OutputComponent.java |  4 +-
 .../component/system/ReceiveComponent.java      |  4 +-
 .../component/system/S3InputComponent.java      |  4 +-
 .../component/system/StreamSourceComponent.java |  4 +-
 .../component/system/SubWorkflowComponent.java  |  4 +-
 .../model/component/system/SystemComponent.java |  4 +-
 .../system/SystemComponentDataPort.java         |  4 +-
 .../system/SystemComponentReference.java        |  4 +-
 .../system/SystemComponentRegistry.java         |  4 +-
 .../component/url/URLComponentReference.java    |  4 +-
 .../component/url/URLComponentRegistry.java     |  4 +-
 .../component/web/WebComponentReference.java    |  4 +-
 .../component/web/WebComponentRegistry.java     |  4 +-
 .../model/component/ws/WSComponent.java         |  4 +-
 .../component/ws/WSComponentApplication.java    |  4 +-
 .../ws/WSComponentApplicationParameter.java     |  4 +-
 .../model/component/ws/WSComponentFactory.java  |  4 +-
 .../model/component/ws/WSComponentKey.java      |  4 +-
 .../model/component/ws/WSComponentPort.java     |  4 +-
 .../component/ws/WSComponentReference.java      |  4 +-
 .../model/component/ws/WSComponentRegistry.java |  4 +-
 .../model/component/ws/WorkflowComponent.java   |  4 +-
 .../exceptions/LazyLoadedDataException.java     |  4 +-
 .../model/exceptions/UtilsException.java        |  4 +-
 .../model/exceptions/WorkflowException.java     |  4 +-
 .../exceptions/WorkflowRuntimeException.java    |  4 +-
 .../airavata/workflow/model/gpel/DSCUtil.java   |  4 +-
 .../workflow/model/gpel/script/BPELScript.java  |  4 +-
 .../model/gpel/script/BPELScriptType.java       |  4 +-
 .../model/gpel/script/WorkflowWSDL.java         |  4 +-
 .../workflow/model/graph/ControlEdge.java       |  4 +-
 .../workflow/model/graph/ControlPort.java       |  4 +-
 .../airavata/workflow/model/graph/DataEdge.java |  4 +-
 .../airavata/workflow/model/graph/DataPort.java |  4 +-
 .../airavata/workflow/model/graph/EPRPort.java  |  4 +-
 .../airavata/workflow/model/graph/Edge.java     |  4 +-
 .../model/graph/ForEachExecutableNode.java      |  5 +-
 .../airavata/workflow/model/graph/Graph.java    |  4 +-
 .../workflow/model/graph/GraphException.java    |  4 +-
 .../workflow/model/graph/GraphFactory.java      |  4 +-
 .../workflow/model/graph/GraphPiece.java        |  4 +-
 .../workflow/model/graph/GraphSchema.java       |  4 +-
 .../airavata/workflow/model/graph/Node.java     |  4 +-
 .../airavata/workflow/model/graph/Port.java     |  4 +-
 .../model/graph/amazon/InstanceDataPort.java    |  4 +-
 .../model/graph/amazon/InstanceNode.java        |  4 +-
 .../model/graph/amazon/ResourceNode.java        |  4 +-
 .../graph/amazon/TerminateInstanceNode.java     |  4 +-
 .../model/graph/dynamic/BasicTypeMapping.java   |  4 +-
 .../model/graph/dynamic/DynamicNode.java        |  4 +-
 .../model/graph/dynamic/DynamicPort.java        |  4 +-
 .../model/graph/dynamic/PortAddable.java        |  4 +-
 .../model/graph/dynamic/SchemaCompilerUtil.java |  4 +-
 .../workflow/model/graph/impl/EdgeImpl.java     |  4 +-
 .../workflow/model/graph/impl/GraphImpl.java    |  4 +-
 .../workflow/model/graph/impl/NodeImpl.java     |  4 +-
 .../workflow/model/graph/impl/PortImpl.java     |  4 +-
 .../graph/subworkflow/SubWorkflowNode.java      |  4 +-
 .../workflow/model/graph/system/BlockNode.java  |  4 +-
 .../model/graph/system/ConstantNode.java        |  4 +-
 .../model/graph/system/DifferedInputNode.java   |  7 ++-
 .../model/graph/system/DoWhileNode.java         |  4 +-
 .../model/graph/system/EndBlockNode.java        |  4 +-
 .../model/graph/system/EndDoWhileNode.java      |  4 +-
 .../model/graph/system/EndForEachNode.java      |  4 +-
 .../workflow/model/graph/system/EndifNode.java  |  4 +-
 .../workflow/model/graph/system/ExitNode.java   |  4 +-
 .../model/graph/system/ForEachNode.java         |  4 +-
 .../workflow/model/graph/system/IfNode.java     |  4 +-
 .../workflow/model/graph/system/InputNode.java  |  4 +-
 .../workflow/model/graph/system/MemoNode.java   |  4 +-
 .../workflow/model/graph/system/OutputNode.java |  4 +-
 .../model/graph/system/ParameterNode.java       |  4 +-
 .../model/graph/system/ReceiveNode.java         |  4 +-
 .../model/graph/system/S3InputNode.java         |  4 +-
 .../model/graph/system/StreamSourceNode.java    |  4 +-
 .../model/graph/system/SystemDataPort.java      |  4 +-
 .../workflow/model/graph/system/SystemNode.java |  4 +-
 .../workflow/model/graph/util/GraphUtil.java    |  4 +-
 .../workflow/model/graph/ws/WSGraph.java        |  4 +-
 .../workflow/model/graph/ws/WSGraphFactory.java |  4 +-
 .../workflow/model/graph/ws/WSNode.java         |  4 +-
 .../workflow/model/graph/ws/WSPort.java         |  4 +-
 .../workflow/model/graph/ws/WorkflowNode.java   |  4 +-
 .../workflow/model/ode/ODEBPELTransformer.java  | 19 ++++++++
 .../airavata/workflow/model/ode/ODEClient.java  | 19 ++++++++
 .../model/ode/ODEDeploymentDescriptor.java      | 19 ++++++++
 .../workflow/model/ode/ODEWSDLTransformer.java  | 19 ++++++++
 .../workflow/model/ode/WSDLCleaner.java         | 19 ++++++++
 .../model/utils/ApplicationVersion.java         |  4 +-
 .../workflow/model/utils/FileConstants.java     |  4 +-
 .../workflow/model/utils/MessageConstants.java  |  4 +-
 .../workflow/model/utils/WorkflowConstants.java |  4 +-
 .../model/wf/InvalidDataFormatException.java    |  4 +-
 .../workflow/model/wf/TridentTransformer.java   |  4 +-
 .../airavata/workflow/model/wf/Workflow.java    |  4 +-
 .../workflow/model/wf/WorkflowData.java         |  4 +-
 .../model/wf/WorkflowExecutionState.java        |  4 +-
 .../workflow/model/wf/WorkflowInput.java        |  4 +-
 .../workflow/model/xsd/GFacSimpleTypesXSD.java  |  4 +-
 .../model/xsd/LeadContextHeaderXSD.java         |  4 +-
 .../workflow/model/xsd/LeadCrosscutXSD.java     |  4 +-
 modules/workflow/pom.xml                        | 31 ++++++++----
 modules/workflow/workflow-core/pom.xml          | 31 ++++++++----
 .../airavata/workflow/core/WorkflowBuilder.java |  4 +-
 .../workflow/core/WorkflowEnactmentService.java |  4 +-
 .../airavata/workflow/core/WorkflowFactory.java |  4 +-
 .../airavata/workflow/core/WorkflowInfo.java    |  3 +-
 .../workflow/core/WorkflowInterpreter.java      |  4 +-
 .../apache/airavata/workflow/core/XMLUtil.java  |  4 +-
 .../airavata/workflow/core/XmlFormatter.java    |  4 +-
 .../workflow/core/dag/edge/DirectedEdge.java    |  4 +-
 .../airavata/workflow/core/dag/edge/Edge.java   |  4 +-
 .../core/dag/nodes/ApplicationNode.java         |  4 +-
 .../core/dag/nodes/ApplicationNodeImpl.java     |  4 +-
 .../workflow/core/dag/nodes/InputNode.java      |  4 +-
 .../workflow/core/dag/nodes/InputNodeImpl.java  |  4 +-
 .../workflow/core/dag/nodes/NodeType.java       |  4 +-
 .../workflow/core/dag/nodes/OutputNode.java     |  4 +-
 .../workflow/core/dag/nodes/OutputNodeImpl.java |  4 +-
 .../workflow/core/dag/nodes/WorkflowNode.java   |  4 +-
 .../airavata/workflow/core/dag/port/InPort.java |  4 +-
 .../workflow/core/dag/port/InputPortIml.java    |  4 +-
 .../workflow/core/dag/port/OutPort.java         |  4 +-
 .../workflow/core/dag/port/OutPortImpl.java     |  4 +-
 .../airavata/workflow/core/dag/port/Port.java   |  4 +-
 .../core/parser/JsonWorkflowParser.java         |  4 +-
 .../workflow/core/parser/ParserException.java   |  3 +-
 .../workflow/core/parser/WorkflowParser.java    |  4 +-
 .../airavata/workflow/core/XMLUtilTest.java     |  5 +-
 .../core/parser/JsonWorkflowParserTest.java     |  4 +-
 modules/xbaya-gui/pom.xml                       | 26 +++++++---
 .../apache/airavata/xbaya/ThriftClientData.java |  4 +-
 .../airavata/xbaya/ThriftServiceType.java       |  4 +-
 .../java/org/apache/airavata/xbaya/XBaya.java   |  4 +-
 .../airavata/xbaya/XBayaConfiguration.java      |  4 +-
 .../apache/airavata/xbaya/XBayaConstants.java   |  4 +-
 .../org/apache/airavata/xbaya/XBayaEngine.java  |  4 +-
 .../org/apache/airavata/xbaya/XBayaVersion.java |  4 +-
 .../component/registry/ComponentController.java |  4 +-
 .../registry/ComponentRegistryLoader.java       |  4 +-
 .../xbaya/concurrent/PredicatedExecutable.java  |  5 +-
 .../xbaya/concurrent/PredicatedTaskRunner.java  |  5 +-
 .../xbaya/core/amazon/AmazonCredential.java     |  4 +-
 .../xbaya/core/amazon/EC2InstanceResult.java    |  4 +-
 .../xbaya/core/generators/BPELFiler.java        |  4 +-
 .../xbaya/core/generators/ImageFiler.java       |  4 +-
 .../xbaya/core/generators/JythonFiler.java      |  4 +-
 .../xbaya/core/generators/ODEScriptFiler.java   |  4 +-
 .../xbaya/core/generators/ScuflFiler.java       |  4 +-
 .../xbaya/core/generators/WorkflowFiler.java    |  4 +-
 .../xbaya/core/generators/XmlBeansFiler.java    |  4 +-
 .../core/ide/XBayaExecutionModeListener.java    |  4 +-
 .../xbaya/core/workflow/ParameterListModel.java |  4 +-
 .../xbaya/datadriven/WorkflowHarvester.java     |  4 +-
 .../airavata/xbaya/file/XBayaPathConstants.java |  4 +-
 .../airavata/xbaya/gfac/GFacRegistryClient.java |  4 +-
 .../airavata/xbaya/gfac/SimpleWSClient.java     |  4 +-
 .../xbaya/globus/FileTransferConstants.java     |  4 +-
 .../xbaya/globus/GridFTPFileTransferClient.java | 19 ++++++++
 .../xbaya/graph/controller/NodeController.java  |  4 +-
 .../xbaya/interpretor/ExperimentTemplate.java   | 19 ++++++++
 .../GUIWorkflowInterpreterInteractorImpl.java   | 19 ++++++++
 .../xbaya/interpretor/HeaderConstants.java      |  4 +-
 .../SSWorkflowInterpreterInteractorImpl.java    | 19 ++++++++
 .../StandaloneNotificationSender.java           |  4 +-
 .../WorkFlowInterpreterException.java           |  4 +-
 .../interpretor/WorkflowExecutionMessage.java   |  4 +-
 .../interpretor/WorkflowExecutionTemplate.java  | 19 ++++++++
 .../xbaya/interpretor/WorkflowInterpreter.java  | 19 ++++++++
 .../WorkflowInterpreterConfiguration.java       | 19 ++++++++
 .../WorkflowInterpreterInteractor.java          | 19 ++++++++
 .../interpretor/WorkflowInterpreterInvoker.java |  4 +-
 .../WorkflowInterpretorEventListener.java       | 19 ++++++++
 ...WorkflowInterpretorMessageReceiverInOut.java | 19 ++++++++
 .../WorkflowInterpretorSkeleton.java            | 19 ++++++++
 .../xbaya/jython/lib/GFacServiceCreator.java    |  4 +-
 .../xbaya/jython/lib/NotificationSender.java    | 19 ++++++++
 .../xbaya/jython/lib/ServiceNotifiable.java     |  4 +-
 .../jython/lib/ServiceNotificationSender.java   | 19 ++++++++
 .../StandaloneServiceNotificationSender.java    |  4 +-
 .../xbaya/jython/lib/WorkflowNotifiable.java    |  4 +-
 .../xbaya/jython/runner/JythonClassLoader.java  |  4 +-
 .../jython/runner/JythonOneTimeRunner.java      |  4 +-
 .../jython/runner/JythonOneTimeRunnerImpl.java  |  4 +-
 .../xbaya/jython/runner/JythonRunner.java       |  4 +-
 .../xbaya/jython/script/JythonScript.java       |  4 +-
 .../xbaya/menues/tools/ToolsMenuItem.java       |  4 +-
 .../airavata/xbaya/messaging/EventData.java     |  4 +-
 .../xbaya/messaging/EventDataListener.java      |  4 +-
 .../xbaya/messaging/EventDataRepository.java    |  4 +-
 .../airavata/xbaya/messaging/Monitor.java       |  4 +-
 .../xbaya/messaging/MonitorException.java       |  4 +-
 .../xbaya/messaging/NotificationHandler.java    |  4 +-
 .../airavata/xbaya/messaging/event/Event.java   |  4 +-
 .../xbaya/messaging/event/EventListener.java    |  4 +-
 .../xbaya/messaging/event/EventProducer.java    |  4 +-
 .../xbaya/modifier/WorkflowModifier.java        |  4 +-
 .../xbaya/registry/PasswordCallbackImpl.java    | 19 ++++++++
 .../xbaya/scufl/script/ScuflScript.java         | 19 ++++++++
 .../xbaya/test/util/WorkflowCreator.java        | 19 ++++++++
 .../org/apache/airavata/xbaya/ui/XBayaGUI.java  |  4 +-
 .../ui/actions/AbstractBrowserActionItem.java   |  4 +-
 .../ui/actions/registry/browser/AddAction.java  |  4 +-
 .../actions/registry/browser/BrowserAction.java |  4 +-
 .../ui/actions/registry/browser/CopyAction.java |  4 +-
 .../actions/registry/browser/DeleteAction.java  |  4 +-
 .../ui/actions/registry/browser/EditAction.java |  4 +-
 .../actions/registry/browser/ImportAction.java  |  4 +-
 .../actions/registry/browser/RefreshAction.java |  4 +-
 .../ui/actions/registry/browser/ViewAction.java |  4 +-
 .../airavata/xbaya/ui/dialogs/AboutWindow.java  |  4 +-
 .../airavata/xbaya/ui/dialogs/ErrorWindow.java  |  4 +-
 .../ui/dialogs/GlobusFileTransferWindow.java    | 19 ++++++++
 .../airavata/xbaya/ui/dialogs/TextWindow.java   |  4 +-
 .../airavata/xbaya/ui/dialogs/WaitDialog.java   |  4 +-
 .../airavata/xbaya/ui/dialogs/XBayaDialog.java  |  4 +-
 .../dialogs/amazon/AmazonEC2InvokerWindow.java  |  4 +-
 .../ui/dialogs/amazon/AmazonS3UtilsWindow.java  |  4 +-
 .../xbaya/ui/dialogs/amazon/BucketsLoader.java  |  4 +-
 .../dialogs/amazon/ChangeCredentialWindow.java  |  4 +-
 .../amazon/EC2InstancesManagementWindow.java    |  4 +-
 .../ui/dialogs/amazon/EC2LaunchWindow.java      |  4 +-
 .../ui/dialogs/amazon/InstancesLoader.java      |  4 +-
 .../xbaya/ui/dialogs/amazon/S3Downloader.java   |  4 +-
 .../xbaya/ui/dialogs/amazon/S3Uploader.java     |  4 +-
 .../ui/dialogs/component/URLRegistryWindow.java |  4 +-
 .../ui/dialogs/component/WebResigtryWindow.java |  4 +-
 .../amazon/InstanceConfigurationDialog.java     |  4 +-
 .../system/ConstantConfigurationDialog.java     |  4 +-
 .../DifferedInputConfigurationDialog.java       |  4 +-
 .../graph/system/DoWhileConfigrationDialog.java |  4 +-
 .../system/EndBlockConfigurationDialog.java     |  4 +-
 .../system/EndDoWhileConfigurationDialog.java   |  4 +-
 .../system/EndForEachConfigurationDialog.java   |  4 +-
 .../graph/system/EndifConfigurationDialog.java  |  4 +-
 .../system/ForEachConfigurationDialog.java      |  4 +-
 .../graph/system/IfConfigurationDialog.java     |  4 +-
 .../graph/system/InputConfigurationDialog.java  |  4 +-
 .../graph/system/MemoConfigurationDialog.java   |  4 +-
 .../graph/system/OutputConfigurationDialog.java |  4 +-
 .../system/ReceiveConfigurationDialog.java      |  4 +-
 .../ui/dialogs/graph/system/S3FileChooser.java  |  4 +-
 .../system/StreamSourceConfigurationDialog.java |  4 +-
 .../graph/ws/ServiceInteractionWindow.java      |  4 +-
 .../xbaya/ui/dialogs/graph/ws/WSNodeWindow.java |  4 +-
 .../monitor/MonitorConfigurationWindow.java     |  4 +-
 .../xbaya/ui/dialogs/monitor/MonitorWindow.java |  4 +-
 .../dialogs/registry/NewRegistryUserDialog.java |  4 +-
 .../ui/dialogs/registry/RegistryWindow.java     |  4 +-
 .../registry/browser/JCRBrowserDialog.java      |  4 +-
 .../workflow/ParameterPropertyWindow.java       |  4 +-
 .../dialogs/workflow/WorkflowImportWindow.java  |  4 +-
 .../workflow/WorkflowPropertyWindow.java        |  4 +-
 .../xbaya/ui/experiment/ExperimentMenu.java     |  4 +-
 .../ui/experiment/LaunchApplicationWindow.java  |  4 +-
 .../ui/experiment/RegistrySearchResult.java     |  4 +-
 .../RegistryWorkflowPublisherWindow.java        |  4 +-
 .../WorkflowInterpreterLaunchWindow.java        |  4 +-
 .../apache/airavata/xbaya/ui/graph/EdgeGUI.java |  4 +-
 .../airavata/xbaya/ui/graph/GraphCanvas.java    |  4 +-
 .../xbaya/ui/graph/GraphCanvasEvent.java        |  4 +-
 .../xbaya/ui/graph/GraphCanvasListener.java     |  4 +-
 .../airavata/xbaya/ui/graph/GraphGUI.java       |  4 +-
 .../airavata/xbaya/ui/graph/GraphPieceGUI.java  |  4 +-
 .../apache/airavata/xbaya/ui/graph/NodeGUI.java |  4 +-
 .../airavata/xbaya/ui/graph/Paintable.java      |  4 +-
 .../apache/airavata/xbaya/ui/graph/PortGUI.java |  4 +-
 .../xbaya/ui/graph/amazon/InstanceNodeGUI.java  |  4 +-
 .../graph/amazon/TerminateInstanceNodeGUI.java  |  4 +-
 .../graph/subworkflow/SubWorkflowNodeGUI.java   |  4 +-
 .../xbaya/ui/graph/system/BlockNodeGUI.java     |  4 +-
 .../ui/graph/system/ConfigurableNodeGUI.java    |  4 +-
 .../xbaya/ui/graph/system/ConstantNodeGUI.java  |  4 +-
 .../ui/graph/system/DifferedInputHandler.java   |  3 +-
 .../ui/graph/system/DifferedInputNodeGUI.java   |  3 +-
 .../xbaya/ui/graph/system/DoWhileNodeGUI.java   |  4 +-
 .../xbaya/ui/graph/system/EndBlockNodeGUI.java  |  4 +-
 .../ui/graph/system/EndDoWhileNodeGUI.java      |  4 +-
 .../ui/graph/system/EndForEachNodeGUI.java      |  4 +-
 .../xbaya/ui/graph/system/EndifNodeGUI.java     |  4 +-
 .../xbaya/ui/graph/system/ExitNodeGUI.java      |  4 +-
 .../xbaya/ui/graph/system/ForEachNodeGUI.java   |  4 +-
 .../xbaya/ui/graph/system/IfNodeGUI.java        |  4 +-
 .../xbaya/ui/graph/system/InputNodeGUI.java     |  4 +-
 .../xbaya/ui/graph/system/MemoNodeGUI.java      |  4 +-
 .../xbaya/ui/graph/system/OutputNodeGUI.java    |  4 +-
 .../xbaya/ui/graph/system/ReceiveNodeGUI.java   |  4 +-
 .../xbaya/ui/graph/system/S3InputNodeGUI.java   |  4 +-
 .../ui/graph/system/StreamSourceNodeGUI.java    |  4 +-
 .../airavata/xbaya/ui/graph/ws/WSNodeGUI.java   |  4 +-
 .../xbaya/ui/graph/ws/WorkflowNodeGUI.java      |  4 +-
 .../xbaya/ui/menues/AmazonEC2MenuItem.java      |  4 +-
 .../xbaya/ui/menues/ApplicationMenuItem.java    |  4 +-
 .../airavata/xbaya/ui/menues/EditMenuItem.java  |  4 +-
 .../airavata/xbaya/ui/menues/MenuIcons.java     |  4 +-
 .../xbaya/ui/menues/RegistryMenuItem.java       |  4 +-
 .../airavata/xbaya/ui/menues/RunMenuItem.java   |  4 +-
 .../airavata/xbaya/ui/menues/ViewMenuItem.java  |  4 +-
 .../airavata/xbaya/ui/menues/XBayaMenu.java     |  4 +-
 .../airavata/xbaya/ui/menues/XBayaMenuItem.java |  4 +-
 .../xbaya/ui/monitor/MonitorEventHandler.java   |  4 +-
 .../xbaya/ui/monitor/MonitorStarter.java        |  4 +-
 .../xbaya/ui/monitor/ResourcePaintable.java     |  4 +-
 .../airavata/xbaya/ui/utils/Cancelable.java     |  4 +-
 .../airavata/xbaya/ui/utils/DrawUtils.java      |  4 +-
 .../airavata/xbaya/ui/utils/ErrorMessages.java  |  4 +-
 .../xbaya/ui/views/ComponentViewer.java         |  4 +-
 .../xbaya/ui/views/JCRBrowserPanel.java         | 19 ++++++++
 .../airavata/xbaya/ui/views/MonitorPanel.java   |  4 +-
 .../xbaya/ui/views/ParameterPropertyPanel.java  |  4 +-
 .../airavata/xbaya/ui/views/PortViewer.java     |  4 +-
 .../airavata/xbaya/ui/widgets/GridPanel.java    |  4 +-
 .../airavata/xbaya/ui/widgets/ScrollPanel.java  |  4 +-
 .../xbaya/ui/widgets/TabLabelButton.java        |  4 +-
 .../xbaya/ui/widgets/TableRenderable.java       |  4 +-
 .../xbaya/ui/widgets/ToolbarButton.java         |  4 +-
 .../xbaya/ui/widgets/XBayaComboBox.java         |  4 +-
 .../xbaya/ui/widgets/XBayaComponent.java        |  4 +-
 .../airavata/xbaya/ui/widgets/XBayaLabel.java   |  3 +-
 .../xbaya/ui/widgets/XBayaLinkButton.java       |  4 +-
 .../airavata/xbaya/ui/widgets/XBayaList.java    |  4 +-
 .../xbaya/ui/widgets/XBayaTextArea.java         |  4 +-
 .../xbaya/ui/widgets/XBayaTextComponent.java    |  4 +-
 .../xbaya/ui/widgets/XBayaTextField.java        |  4 +-
 .../airavata/xbaya/ui/widgets/XBayaToolBar.java |  4 +-
 .../xbaya/ui/widgets/XbayaEnhancedList.java     |  4 +-
 .../xbaya/ui/widgets/amazon/S3Tree.java         |  4 +-
 .../xbaya/ui/widgets/amazon/S3TreeModel.java    |  4 +-
 .../ui/widgets/component/ComponentSelector.java |  4 +-
 .../component/ComponentSelectorEvent.java       |  4 +-
 .../component/ComponentSelectorListener.java    |  4 +-
 .../component/ComponentSourceTransferable.java  |  4 +-
 .../widgets/component/ComponentTreeModel.java   |  4 +-
 .../ui/widgets/component/ComponentTreeNode.java |  4 +-
 .../apache/airavata/xbaya/util/AmazonUtil.java  |  4 +-
 .../org/apache/airavata/xbaya/util/Data.java    |  4 +-
 .../apache/airavata/xbaya/util/GOConstants.java |  4 +-
 .../airavata/xbaya/util/GlobusOnlineUtils.java  | 19 ++++++++
 .../airavata/xbaya/util/RegistryConstants.java  |  4 +-
 .../airavata/xbaya/util/TransferFile.java       |  4 +-
 .../apache/airavata/xbaya/util/XBayaUtil.java   |  4 +-
 .../airavata/xbaya/workflow/WorkflowClient.java |  4 +-
 .../xbaya/workflow/WorkflowEngineException.java |  4 +-
 .../xbaya/workflow/proxy/ProxyWSDL.java         |  4 +-
 .../xbaya/workflow/proxy/WorkflowClient.java    |  4 +-
 .../xbaya/workflow/proxy/WorkflowContext.java   |  4 +-
 .../workflow/proxy/WorkflowProxyException.java  |  4 +-
 .../interpreter/ComplexForEachWorkflowTest.java | 19 ++++++++
 .../xbaya/interpreter/ComplexMathService.java   |  4 +-
 .../interpreter/ComplexMathWorkflowTest.java    | 19 ++++++++
 .../interpreter/CrossProductWorkflowTest.java   | 19 ++++++++
 .../airavata/xbaya/interpreter/EchoService.java |  3 +-
 .../xbaya/interpreter/ForEachWorkflowTest.java  | 19 ++++++++
 .../interpreter/LevenshteinDistanceService.java |  4 +-
 .../airavata/xbaya/interpreter/Listener.java    | 19 ++++++++
 .../xbaya/interpreter/NotificationSender.java   | 19 ++++++++
 .../xbaya/interpreter/RegistryServiceTest.java  | 19 ++++++++
 .../interpreter/SimpleForEachWorkflowTest.java  | 19 ++++++++
 .../interpreter/SimpleMathWorkflowTest.java     | 19 ++++++++
 .../xbaya/interpreter/WorkflowTest.java         | 19 ++++++++
 .../xbaya/interpreter/WorkflowTrackingTest.java | 19 ++++++++
 .../xbaya/interpreter/XBayaClientTest.java      |  5 +-
 .../interpreter/XBayaConsolidatedTestSuite.java | 19 ++++++++
 .../xbaya/interpreter/utils/ConfigKeys.java     |  5 +-
 .../xbaya/interpreter/utils/TestUtilServer.java | 19 ++++++++
 .../interpreter/utils/WorkflowTestUtils.java    | 19 ++++++++
 pom.xml                                         | 50 ++++++++++++++++----
 sandbox/amqpwstunnel/python/amqpwstunnel.py     | 20 ++++++++
 sandbox/amqpwstunnel/wstest.html                | 21 ++++++++
 sandbox/job-status-rest-server/api_test.py      | 20 ++++++++
 sandbox/job-status-rest-server/app.py           | 20 ++++++++
 .../example/logfile_checker/generate_logs.sh    | 20 ++++++++
 .../example/logfile_checker/log_consumer.py     | 20 ++++++++
 .../example/logfile_checker/log_streamer.py     | 20 ++++++++
 .../simstream/example/logfile_checker/test.txt  | 20 ++++++++
 .../example/mem_streamer/memory_consumption.py  | 20 ++++++++
 .../example/mem_streamer/memory_streamer.py     | 20 ++++++++
 .../application/alanine_dipeptide.py            | 20 ++++++++
 .../example/openmm_example/openmm_consumer.py   | 20 ++++++++
 .../openmm_example/openmm_log_consumer.py       | 20 ++++++++
 .../openmm_example/openmm_rmsd_consumer.py      | 20 ++++++++
 .../example/openmm_example/openmm_streamer.py   | 20 ++++++++
 .../simstream/example/openmm_example/test.txt   | 20 ++++++++
 sandbox/simstream/setup.py                      | 20 ++++++++
 sandbox/simstream/simstream/__init__.py         | 20 ++++++++
 sandbox/simstream/simstream/datacollector.py    | 20 ++++++++
 sandbox/simstream/simstream/datareporter.py     | 20 ++++++++
 sandbox/simstream/simstream/eventhandler.py     | 20 ++++++++
 sandbox/simstream/simstream/eventmonitor.py     | 20 ++++++++
 .../simstream/simstream/pikaasyncconsumer.py    | 20 ++++++++
 sandbox/simstream/simstream/pikaproducer.py     | 20 ++++++++
 sandbox/simstream/simstream/simstream.py        | 20 ++++++++
 .../component-cpis/generate-cpi-stubs.sh        | 30 +++++++-----
 .../generate-thrift-stubs.sh                    | 30 +++++++-----
 tools/gsissh-cli-tools/README.txt               | 20 ++++++++
 tools/gsissh-cli-tools/pom.xml                  | 29 ++++++++----
 .../ssh/cli/SSHApiClientWithMyProxyAuth.java    |  4 +-
 tools/phoebus-integration/pom.xml               | 26 +++++++---
 .../impl/PhoebusGridConfigurationHandler.java   |  4 +-
 .../airavata/core/gfac/utils/PhoebusUtils.java  |  4 +-
 tools/pom.xml                                   | 26 +++++++---
 tools/rabbitmq-download-start.sh                | 20 ++++++++
 1628 files changed, 10543 insertions(+), 5804 deletions(-)
----------------------------------------------------------------------



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