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From shame...@apache.org
Subject [29/31] airavata git commit: updating local to upstream develop
Date Fri, 07 Oct 2016 20:52:56 GMT
updating local to upstream develop


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/fa5a1e0f
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/fa5a1e0f
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/fa5a1e0f

Branch: refs/heads/develop
Commit: fa5a1e0fc6fe2140f822525e313bc57566024294
Parents: 8469eff 9f0445f
Author: Anuj Bhandar <bhandar.anuj@gmail.com>
Authored: Fri Oct 7 12:36:40 2016 -0400
Committer: Anuj Bhandar <bhandar.anuj@gmail.com>
Committed: Fri Oct 7 12:36:40 2016 -0400

----------------------------------------------------------------------
 .../server/handler/AiravataServerHandler.java   |    11 +
 .../java/org/apache/airavata/api/Airavata.java  | 47254 +++++++++--------
 .../main/resources/lib/airavata/Airavata.cpp    |   506 +
 .../src/main/resources/lib/airavata/Airavata.h  |   146 +
 .../lib/airavata/Airavata_server.skeleton.cpp   |     5 +
 .../resources/lib/Airavata/API/Airavata.php     |   301 +
 .../resources/lib/Airavata/Model/job/Types.php  |    22 +-
 .../lib/apache/airavata/api/Airavata-remote     |     7 +
 .../lib/apache/airavata/api/Airavata.py         |   395 +
 .../apache/airavata/model/ComponentStatus.java  |     2 +-
 .../org/apache/airavata/model/EdgeModel.java    |     2 +-
 .../org/apache/airavata/model/NodeModel.java    |     2 +-
 .../org/apache/airavata/model/PortModel.java    |     2 +-
 .../apache/airavata/model/WorkflowModel.java    |     2 +-
 .../apache/airavata/model/WorkflowStatus.java   |     2 +-
 .../ApplicationDeploymentDescription.java       |     2 +-
 .../appdeployment/ApplicationModule.java        |     2 +-
 .../appcatalog/appdeployment/CommandObject.java |     2 +-
 .../appcatalog/appdeployment/SetEnvPaths.java   |     2 +-
 .../ApplicationInterfaceDescription.java        |     2 +-
 .../appcatalog/computeresource/BatchQueue.java  |     2 +-
 .../computeresource/CloudJobSubmission.java     |     2 +-
 .../ComputeResourceDescription.java             |     2 +-
 .../computeresource/GlobusJobSubmission.java    |     2 +-
 .../computeresource/JobSubmissionInterface.java |     2 +-
 .../computeresource/LOCALSubmission.java        |     2 +-
 .../computeresource/ResourceJobManager.java     |     2 +-
 .../computeresource/SSHJobSubmission.java       |     2 +-
 .../computeresource/UnicoreJobSubmission.java   |     2 +-
 .../ComputeResourcePreference.java              |     2 +-
 .../gatewayprofile/GatewayResourceProfile.java  |     2 +-
 .../gatewayprofile/StoragePreference.java       |     2 +-
 .../StorageResourceDescription.java             |     2 +-
 .../UserComputeResourcePreference.java          |     2 +-
 .../UserResourceProfile.java                    |     2 +-
 .../UserStoragePreference.java                  |     2 +-
 .../application/io/InputDataObjectType.java     |     2 +-
 .../application/io/OutputDataObjectType.java    |     2 +-
 .../airavata/model/commons/ErrorModel.java      |     2 +-
 .../model/commons/ValidationResults.java        |     2 +-
 .../airavata/model/commons/ValidatorResult.java |     2 +-
 .../data/movement/DataMovementInterface.java    |     2 +-
 .../data/movement/GridFTPDataMovement.java      |     2 +-
 .../model/data/movement/LOCALDataMovement.java  |     2 +-
 .../model/data/movement/SCPDataMovement.java    |     2 +-
 .../data/movement/UnicoreDataMovement.java      |     2 +-
 .../model/data/replica/DataProductModel.java    |     2 +-
 .../data/replica/DataReplicaLocationModel.java  |     2 +-
 .../model/error/AiravataClientException.java    |     2 +-
 .../model/error/AiravataSystemException.java    |     2 +-
 .../model/error/AuthenticationException.java    |     2 +-
 .../model/error/AuthorizationException.java     |     2 +-
 .../error/ExperimentNotFoundException.java      |     2 +-
 .../model/error/InvalidRequestException.java    |     2 +-
 .../model/error/LaunchValidationException.java  |     2 +-
 .../model/error/ProjectNotFoundException.java   |     2 +-
 .../airavata/model/error/TimedOutException.java |     2 +-
 .../airavata/model/error/ValidationResults.java |     2 +-
 .../airavata/model/error/ValidatorResult.java   |     2 +-
 .../model/experiment/ExperimentModel.java       |     2 +-
 .../model/experiment/ExperimentStatistics.java  |     2 +-
 .../experiment/ExperimentSummaryModel.java      |     2 +-
 .../experiment/UserConfigurationDataModel.java  |     2 +-
 .../apache/airavata/model/group/GroupModel.java |     2 +-
 .../org/apache/airavata/model/job/JobModel.java |     2 +-
 .../event/ExperimentStatusChangeEvent.java      |     2 +-
 .../messaging/event/ExperimentSubmitEvent.java  |     2 +-
 .../model/messaging/event/JobIdentifier.java    |     2 +-
 .../messaging/event/JobStatusChangeEvent.java   |     2 +-
 .../event/JobStatusChangeRequestEvent.java      |     2 +-
 .../airavata/model/messaging/event/Message.java |     2 +-
 .../messaging/event/ProcessIdentifier.java      |     2 +-
 .../event/ProcessStatusChangeEvent.java         |     2 +-
 .../event/ProcessStatusChangeRequestEvent.java  |     2 +-
 .../messaging/event/ProcessSubmitEvent.java     |     2 +-
 .../messaging/event/ProcessTerminateEvent.java  |     2 +-
 .../model/messaging/event/TaskIdentifier.java   |     2 +-
 .../messaging/event/TaskOutputChangeEvent.java  |     2 +-
 .../messaging/event/TaskStatusChangeEvent.java  |     2 +-
 .../event/TaskStatusChangeRequestEvent.java     |     2 +-
 .../airavata/model/process/ProcessModel.java    |     2 +-
 .../ComputationalResourceSchedulingModel.java   |     2 +-
 .../airavata/model/security/AuthzToken.java     |     2 +-
 .../airavata/model/status/ExperimentStatus.java |     2 +-
 .../apache/airavata/model/status/JobStatus.java |     2 +-
 .../airavata/model/status/ProcessStatus.java    |     2 +-
 .../airavata/model/status/TaskStatus.java       |     2 +-
 .../model/task/DataStagingTaskModel.java        |     2 +-
 .../model/task/EnvironmentSetupTaskModel.java   |     2 +-
 .../model/task/JobSubmissionTaskModel.java      |     2 +-
 .../airavata/model/task/MonitorTaskModel.java   |     2 +-
 .../apache/airavata/model/task/TaskModel.java   |     2 +-
 .../airavata/model/user/NSFDemographics.java    |     2 +-
 .../apache/airavata/model/user/UserProfile.java |     2 +-
 .../airavata/model/workspace/Gateway.java       |     2 +-
 .../apache/airavata/model/workspace/Group.java  |     2 +-
 .../airavata/model/workspace/Notification.java  |     2 +-
 .../airavata/model/workspace/Project.java       |     2 +-
 .../apache/airavata/model/workspace/User.java   |     2 +-
 modules/commons/pom.xml                         |    10 -
 .../airavata/common/utils/AiravataUtils.java    |     2 +-
 .../apache/airavata/common/utils/XMLUtil.java   |   586 -
 .../airavata/common/utils/XmlFormatter.java     |    82 -
 .../airavata/common/utils/XMLUtilTest.java      |    56 -
 .../src/main/resources/FORK_Groovy.template     |    13 +
 .../server/src/main/resources/ForkTemplate.xslt |    24 -
 .../server/src/main/resources/LSFTemplate.xslt  |    92 -
 .../src/main/resources/LSF_Groovy.template      |    27 +
 .../server/src/main/resources/PBSTemplate.xslt  |   107 -
 .../src/main/resources/PBS_Groovy.template      |    31 +
 .../src/main/resources/SLURMTemplate.xslt       |   102 -
 .../src/main/resources/SLURM_Groovy.template    |    28 +
 .../server/src/main/resources/UGETemplate.xslt  |    78 -
 .../src/main/resources/UGE_Groovy.template      |    28 +
 .../server/src/main/resources/logback.xml       |    31 +
 modules/distribution/pom.xml                    |    56 +-
 .../src/main/assembly/bin-assembly.xml          |    15 +-
 modules/gfac/gfac-core/pom.xml                  |    33 +-
 .../apache/airavata/gfac/core/GFacUtils.java    |   171 +-
 .../apache/airavata/gfac/core/GroovyMap.java    |    94 +
 .../airavata/gfac/core/JobDescriptor.java       |   489 -
 .../org/apache/airavata/gfac/core/Script.java   |    75 +
 .../gfac/core/cluster/OutputParser.java         |     8 -
 .../gfac/core/x2012/x12/AfterAnyList.java       |   185 -
 .../gfac/core/x2012/x12/AfterOKList.java        |   185 -
 .../gfac/core/x2012/x12/ExportProperties.java   |   202 -
 .../airavata/gfac/core/x2012/x12/InputList.java |   185 -
 .../core/x2012/x12/JobDescriptorDocument.java   |   131 -
 .../gfac/core/x2012/x12/ModuleLoadCommands.java |   185 -
 .../airavata/gfac/core/x2012/x12/PbsParams.java |  1500 -
 .../gfac/core/x2012/x12/PostJobCommands.java    |   185 -
 .../gfac/core/x2012/x12/PreJobCommands.java     |   185 -
 .../core/x2012/x12/impl/AfterAnyListImpl.java   |   254 -
 .../core/x2012/x12/impl/AfterOKListImpl.java    |   254 -
 .../x2012/x12/impl/ExportPropertiesImpl.java    |   252 -
 .../gfac/core/x2012/x12/impl/InputListImpl.java |   254 -
 .../x12/impl/JobDescriptorDocumentImpl.java     |    96 -
 .../x2012/x12/impl/ModuleLoadCommandsImpl.java  |   254 -
 .../gfac/core/x2012/x12/impl/PbsParamsImpl.java |  4381 --
 .../x2012/x12/impl/PostJobCommandsImpl.java     |   254 -
 .../core/x2012/x12/impl/PreJobCommandsImpl.java |   254 -
 .../src/main/resources/PBSJobDescriptor.xsd     |   116 -
 .../src/main/resources/gsissh-schemas.xsdconfig |    14 -
 .../org/apache/airavata/gfac/impl/Factory.java  |    11 +-
 .../airavata/gfac/impl/GFacEngineImpl.java      |     5 +
 .../gfac/impl/job/ForkOutputParser.java         |     5 -
 .../airavata/gfac/impl/job/LSFOutputParser.java |    10 +-
 .../airavata/gfac/impl/job/PBSOutputParser.java |    90 +-
 .../gfac/impl/job/SlurmOutputParser.java        |    61 +-
 .../airavata/gfac/impl/job/UGEOutputParser.java |    89 +-
 .../impl/task/DefaultJobSubmissionTask.java     |     8 +-
 .../gfac/impl/task/ForkJobSubmissionTask.java   |     6 +-
 .../catalog/impl/ExperimentRegistry.java        |     8 +
 .../src/main/resources/credstore-mysql.sql      |    10 +-
 .../org/apache/airavata/server/ServerMain.java  |     1 +
 .../engine/interpretor/WorkflowInterpreter.java |     1 -
 .../invoker/MsgBoxWsaResponsesCorrelator.java   |     2 +-
 .../component/ws/WSComponentApplication.java    |     1 -
 .../workflow/model/gpel/script/BPELScript.java  |     2 -
 .../model/gpel/script/WorkflowWSDL.java         |     1 -
 .../airavata/workflow/model/wf/Workflow.java    |     1 -
 modules/workflow/workflow-core/pom.xml          |    11 +-
 .../apache/airavata/workflow/core/XMLUtil.java  |   587 +
 .../airavata/workflow/core/XmlFormatter.java    |    82 +
 .../airavata/workflow/core/XMLUtilTest.java     |    56 +
 pom.xml                                         |     2 +
 .../airavata-apis/airavata_api.thrift           |     5 +
 167 files changed, 26946 insertions(+), 34500 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/airavata/blob/fa5a1e0f/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
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